SocketException during Full GC - garbage-collection

I am seeing a strange behavior in my server logs where, everything time Full GC happens, I see a SocketException is thrown. Is this an expected behavior ?
jdk 1.7
jboss 6.1

Here's a scenario where this is expected behaviour:
Socket is opened
Application wraps SocketOutputStream in BufferedOutputStream
Application writes some data to the BufferedOutputStream
Application leaks the Socket > SocketOutputStream > BufferedOutputStream stack ... without closing it.
Time passes ...
The remote server / client times out the interaction and closes the TCP stream.
Time passes ...
The GC runs, finds the BufferedOutputStream and attempts to finalize it
The finalize() method attempts to flush the buffered data.
That triggers an exception, because the data cannot be flushed to a closed TCP/IP connection.

Related

Node.js Server Timeout Problems (EC2 + Express + PM2)

I'm relatively new to running production node.js apps and I've recently been having problems with my server timing out.
Basically after a certain amount of usage & time my node.js app stops responding to requests. I don't even see routes being fired on my console anymore - it's like the whole thing just comes to a halt and the HTTP calls from my client (iPhone running AFNetworking) don't reach the server anymore. But if I restart my node.js app server everything starts working again, until things inevitable stop again. The app never crashes, it just stops responding to requests.
I'm not getting any errors, and I've made sure to handle and log all DB connection errors so I'm not sure where to start. I thought it might have something to do with memory leaks so I installed node-memwatch and set up a listener for memory leaks but that doesn't get called before my server stops responding to requests.
Any clue as to what might be happening and how I can solve this problem?
Here's my stack:
Node.js on AWS EC2 Micro Instance (using Express 4.0 + PM2)
Database on AWS RDS volume running MySQL (using node-mysql)
Sessions stored w/ Redis on same EC2 instance as the node.js app
Clients are iPhones accessing the server via AFNetworking
Once again no errors are firing with any of the modules mentioned above.
First of all you need to be a bit more specific about timeouts.
TCP timeouts: TCP divides a message into packets which are sent one by one. The receiver needs to acknowledge having received the packet. If the receiver does not acknowledge having received the package within certain period of time, a TCP retransmission occurs, which is sending the same packet again. If this happens a couple of more times, the sender gives up and kills the connection.
HTTP timeout: An HTTP client like a browser, or your server while acting as a client (e.g: sending requests to other HTTP servers), can set an arbitrary timeout. If a response is not received within that period of time, it will disconnect and call it a timeout.
Now, there are many, many possible causes for this... from more trivial to less trivial:
Wrong Content-Length calculation: If you send a request with a Content-Length: 20 header, that means "I am going to send you 20 bytes". If you send 19, the other end will wait for the remaining 1. If that takes too long... timeout.
Not enough infrastructure: Maybe you should assign more machines to your application. If (total load / # of CPU cores) is over 1, or your memory usage is high, your system may be over capacity. However keep reading...
Silent exception: An error was thrown but not logged anywhere. The request never finished processing, leading to the next item.
Resource leaks: Every request needs to be handled to completion. If you don't do this, the connection will remain open. In addition, the IncomingMesage object (aka: usually called req in express code) will remain referenced by other objects (e.g: express itself). Each one of those objects can use a lot of memory.
Node event loop starvation: I will get to that at the end.
For memory leaks, the symptoms would be:
the node process would be using an increasing amount of memory.
To make things worse, if available memory is low and your server is misconfigured to use swapping, Linux will start moving memory to disk (swapping), which is very I/O and CPU intensive. Servers should not have swapping enabled.
cat /proc/sys/vm/swappiness
will return you the level of swappiness configured in your system (goes from 0 to 100). You can modify it in a persistent way via /etc/sysctl.conf (requires restart) or in a volatile way using: sysctl vm.swappiness=10
Once you've established you have a memory leak, you need to get a core dump and download it for analysis. A way to do that can be found in this other Stackoverflow response: Tools to analyze core dump from Node.js
For connection leaks (you leaked a connection by not handling a request to completion), you would be having an increasing number of established connections to your server. You can check your established connections with netstat -a -p tcp | grep ESTABLISHED | wc -l can be used to count established connections.
Now, the event loop starvation is the worst problem. If you have short lived code node works very well. But if you do CPU intensive stuff and have a function that keeps the CPU busy for an excessive amount of time... like 50 ms (50 ms of solid, blocking, synchronous CPU time, not asynchronous code taking 50 ms), operations being handled by the event loop such as processing HTTP requests start falling behind and eventually timing out.
The way to find a CPU bottleneck is using a performance profiler. nodegrind/qcachegrind are my preferred profiling tools but others prefer flamegraphs and such. However it can be hard to run a profiler in production. Just take a development server and slam it with requests. aka: a load test. There are many tools for this.
Finally, another way to debug the problem is:
env NODE_DEBUG=tls,net node <...arguments for your app>
node has optional debug statements that are enabled through the NODE_DEBUG environment variable. Setting NODE_DEBUG to tls,net will make node emit debugging information for the tls and net modules... so basically everything being sent or received. If there's a timeout you will see where it's coming from.
Source: Experience of maintaining large deployments of node services for years.

SO_KEEPALIVE behavior is enabled by default on Linux?

I have a client/server application written in C using TCP sockets. I wanted to know dead server processes using SO_KEEPALIVE option enabled on client socket. I am using Linux.
I modified the default time from 2 hours to 10 minutes.
echo 600 > /proc/sys/net/ipv4/tcp_keepalive_time
I enabled SO_KEEPALIVE on client socket using setsockopt(). I intentionally killed(kill -9) the server process while it's sending data to client.
As expected, after 10 minutes timeout(plus additional time for probes), client socket got notified (read(scoket,...) returned zero).
However, to my surprise, even if I disable this option on client socket, it still gets notified after the specified timeout(read() returns zero).
Is this behavior by default enabled in Linux?
Also, I felt read() returning zero to be inappropriate, shouldn't read() return some error when the peer is dead?
Keepalive causes a connection reset. The only thing that causes read() to return zero is receiving a FIN. Ergo, you received a FIN, not a keepalive termination, and ergo this doesn't show that keepalive is enabled by default in Linux. It would be a violation of RFC 1122.

What constitutes "readable" (kqueue/epoll)

I know that if the remote host gracefully shuts down a connection, epoll will report EPOLLIN, and calling read or recv will not block, and will return 0 bytes (i.e. end of stream).
However, if the connection is not closed gracefully, and a write or send operation fails, does this cause epoll to subsequently return EPOLLIN for that socket, producing the same/similar end of stream scenario?
I've tried to find documentation on this behaviour, but have not succeeded, and while I could test it, I'm not interested in what happens on a specific distribution with a specific kernel version.
It is indeed not entirely obvious from the specification, but it works as follows for poll():
If there is data available to be read, even if the connection is closed, POLLIN is returned.
If neither reading or writing is possible because of a closed connection, POLLHUP or POLLERR is returned.
If reading is no longer possible but writing is (such as if the other side did shutdown(SHUT_WR)), POLLIN is returned and POLLHUP and POLLERR are not returned. (This allows waiting for POLLOUT normally.)
The simple thing to do is to try a read when any of POLLIN, POLLHUP and POLLERR are set.
In kqueue(), there is just an EVFILT_READ filter that may be triggered. This is described in the man page and should be clear enough.
Note that if you don't enable TCP keepalives (FreeBSD enables them by default but most other operating systems do not), waiting for data to read may get stuck forever if the network breaks in certain ways. Even if TCP keepalives are on, it tends to take a few hours to detect a broken connection.
It may not return EPOLLIN when the peer machine is closed unexpectly. In the past, I encounted this kind of phenomenon by VirtualBox as following steps:
Launch server on one VM.
Launch client on the other VM, connect the server and keep the connection without doing anything.
Save client VM state (something like hibernate).
And I saw the connection was still established in Server VM by
netstat -anp --tcp
In other words, EPOLLIN was not triggered in server.
http://tldp.org/HOWTO/html_single/TCP-Keepalive-HOWTO/ says that it will keep about 7200 seconds by default.
Of course, you can change keep alive timeout value by setsockopt or kernel parameters.
But some books says the better solution is to detect it in application layer, e.g. design the protocol that make sure sending some dummy messages periodically to detect the connection state.
epoll() is basically poll() but it scales better when you increase number of fds. I am not sure what it does when you are using it as edge-triggered interface. But for level triggered - yes, it will always return EPOLLIN, provided you are listening to this event, if end of stream is detected.
Though you must know TCP is not perfect. If connection is terminated abnormally (physycal link is down) by the other side, your side may never detect this until you write to the socket. TCP_KEEPALIVE may help, but not much.
However, if the connection is not closed gracefully, and a write or send operation fails, does this cause epoll to subsequently return EPOLLIN for that socket, producing the same/similar end of stream scenario?
No. That would imply receipt of a FIN, which means normal termination of the connection, which didn't happen. I would expect you would get an EPOLLERR or maybe EPOLLHUP.
But I'm curious why you wouldn't have already closed the socket on getting the write error, and why you would still be polling it. That's not correct behaviour.

Meteor - Connection Timeout. No heartbeat received

I get the following error:
Connection timeout. No heartbeat received.
When accessing my meteor app (http://127.0.0.1:3000). The application has been moved over to a new pc with the same code base - and the server runs fine with no errors, and I can access the mongodb. What would cause the above error?
The problem seems to occur when the collection is larger. however I have it running on another computer which loads the collections instantaneously. The connection to to sock takes over a minute and grows in size, before finally failing:
Meteor's DDP implements Sockjs's Heartbeats used for long-polling. This is probably due to DDP Heartbeat's timeout default of 15s. If you access a large amount of data and it takes a lot of time, in your case, 1 minute, DDP will time out after being blocked long enough by the operation to prevent connections being closed by proxies (which can be worse), and then try to reconnect again. This can go on forever and you may never get the process completed.
You can try hypothetically disconnecting and reconnecting in short amount of time before DDP closes the connection, and divide the database access into shorter continuous processes which you can pick up on each iteration and see if the problem persists:
// while cursorCount <= data {
Meteor.onConnection(dbOp);
Meteor.setTimeout(this.disconnect, 1500); // Adjust timeout here
Meteor.reconnect();
cursorCount++;
}
func dbOp(cursorCount) {
// database operation here
// pick up the operation at cursorCount where last .disconnect() left off
}
However, when disconnected all live-updating will stop as well, but explicitly reconnecting might make up for smaller blocking.
See a discussion on this issue on Google groupand Meteor Hackpad

Linux TCP weirdly unresponsive when under heavy load

I'm trying to get an HTTP server I'm writing on to behave well when under heavy load, but I'm getting some weird behavior that I cannot quite understand.
My testing consists of using ab (the Apache benchmark program) over the loopback interface at a concurrency level of 1000 (ab -n 50000 -c 1000 http://localhost:8080/apa), while straceing the server process. Strace both slows processing down well enough for the problem to be readily reproducible and allows me to debug the server internals post completion to some extent. I also capture the network traffic with tcpdump while the test is running.
What happens is that ab stops running a while into the test, complaining that a connection returned ECONNRESET, which I find a bit weird. I could easily buy into a connection timing out since the server might simply not have the bandwidth to process them all, but shouldn't that reasonably return ETIMEDOUT or even ECONNREFUSED if not all connections can be accepted?
I used Wireshark to extract the packets constituting the first connection to return ECONNRESET, and its brief packet list looks like this:
(The entire tcpdump file of this connection is available here.)
As you can see from this dump, the connection is accepted (after a few SYN retransmissions), and then the request is retransmitted a few times, and then the server resets the connection. I'm wondering, what could cause this to happen? Normally, Linux' TCP implementation ACKs data before the reading process even chooses to receive it so long as their is space in the TCP window, so why doesn't it do that here? Are there some kind of shared buffers that are running out? Most importantly, why is the kernel responding with a RST packet all of a sudden instead of simply waiting and letting the client re-transmit further?
For the record, the strace of the process indicates that it never even accepts a connection from the port in this connection (port 56946), so this seems to be something Linux does on its own. It is also worth noting that the server works perfectly well as long as ab's concurrency level is low enough (it works perfectly well up to about 100, and then starts failing intermittently somewhere between 100-500), and that its request throughput is rather constant regardless of the concurrency level (it processes somewhere between 6000-7000 requests per second as long as it isn't being straced). I have not found any particular correlation between the frequency of the problem occurring and my backlog setting to listen() (I'm currently using 128, but I've tried up to 1024 without it seeming to make a difference).
In case it matters, I'm running Linux 3.2.0 on this AMD64 box.
The backlog queue filled up: hence the SYN retransmissions.
Then a slot became available: hence the SYN/ACK.
Then the GET was sent, followed by four retransmissions, which I can't account for.
Then the server gave up and reset the connection.
I suspect you have a concurrency or throughput problem in your server which is preventing you from accepting connections rapidly enough. You should have a thread that is dedicated to doing nothing else but calling accept() and either starting another thread to handle the accepted socket or else queueing a job to handle it to a thread pool. I would then speculate that Linux resets connections on connections which are in the backlog queue and which are receiving I/O retries, but that's only a guess.

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