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vcf-variant-call-format
HaplotypeCaller provide variants more than expected
Filtering and sorting of multiallelic sites
Better splitting of mutliallelic sites then bcftools norm --m-any
BCFtools annotate field
GATK GnarlyGenotyper limit of alleles
What does 'NEGATIVE_TRAIN_SITE' in VQSR mean?
How can I separate consecutive strings without any delimiters?
How to filter VCF file with a list CHR or contig IDs?
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