java.io.FileNotFoundException error in Apache Spark even though my file exists - apache-spark

Question

I'm new to spark and doing on POC to download a file and then read it. However, I am facing issue that the file doesn't exists.
java.io.FileNotFoundException: File file:/app/data-Feb-19-2023_131049.json does not exist
But when I printed the path of the file I find out the file exists and the path is also correct.
This is the output
23/02/19 13:10:46 INFO BlockManagerMasterEndpoint: Registering block manager 10.14.142.21:37515 with 2.2 GiB RAM, BlockManagerId(1, 10.14.142.21, 37515, None)
FILE IS DOWNLOADED
['/app/data-Feb-19-2023_131049.json']
23/02/19 13:10:49 INFO SharedState: Setting hive.metastore.warehouse.dir ('null') to the value of spark.sql.warehouse.dir.
23/02/19 13:10:49 INFO SharedState: Warehouse path is 'file:/app/spark-warehouse'.
23/02/19 13:10:50 INFO InMemoryFileIndex: It took 39 ms to list leaf files for 1 paths.
23/02/19 13:10:51 INFO MemoryStore: Block broadcast_0 stored as values in memory (estimated size 206.6 KiB, free 1048.6 MiB)
23/02/19 13:10:51 INFO MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 35.8 KiB, free 1048.6 MiB)
23/02/19 13:10:51 INFO BlockManagerInfo: Added broadcast_0_piece0 in memory on experian-el-d41b428669cc1e8e-driver-svc.environments-quin-dev-1.svc:7079 (size: 35.8 KiB, free: 1048.8 MiB)
23/02/19 13:10:51 INFO SparkContext: Created broadcast 0 from json at <unknown>:0
23/02/19 13:10:51 INFO FileInputFormat: Total input files to process : 1
23/02/19 13:10:51 INFO FileInputFormat: Total input files to process : 1
23/02/19 13:10:51 INFO SparkContext: Starting job: json at <unknown>:0
23/02/19 13:10:51 INFO DAGScheduler: Got job 0 (json at <unknown>:0) with 1 output partitions
23/02/19 13:10:51 INFO DAGScheduler: Final stage: ResultStage 0 (json at <unknown>:0)
23/02/19 13:10:51 INFO DAGScheduler: Parents of final stage: List()
23/02/19 13:10:51 INFO DAGScheduler: Missing parents: List()
23/02/19 13:10:51 INFO DAGScheduler: Submitting ResultStage 0 (MapPartitionsRDD[2] at json at <unknown>:0), which has no missing parents
23/02/19 13:10:51 INFO MemoryStore: Block broadcast_1 stored as values in memory (estimated size 9.0 KiB, free 1048.6 MiB)
23/02/19 13:10:51 INFO MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 4.8 KiB, free 1048.5 MiB)
23/02/19 13:10:51 INFO BlockManagerInfo: Added broadcast_1_piece0 in memory on experian-el-d41b428669cc1e8e-driver-svc.environments-quin-dev-1.svc:7079 (size: 4.8 KiB, free: 1048.8 MiB)
23/02/19 13:10:51 INFO SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1513
23/02/19 13:10:51 INFO DAGScheduler: Submitting 1 missing tasks from ResultStage 0 (MapPartitionsRDD[2] at json at <unknown>:0) (first 15 tasks are for partitions Vector(0))
23/02/19 13:10:51 INFO TaskSchedulerImpl: Adding task set 0.0 with 1 tasks resource profile 0
23/02/19 13:10:51 INFO TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0) (10.14.142.21, executor 1, partition 0, PROCESS_LOCAL, 4602 bytes) taskResourceAssignments Map()
23/02/19 13:10:52 INFO BlockManagerInfo: Added broadcast_1_piece0 in memory on 10.14.142.21:37515 (size: 4.8 KiB, free: 2.2 GiB)
23/02/19 13:10:52 INFO BlockManagerInfo: Added broadcast_0_piece0 in memory on 10.14.142.21:37515 (size: 35.8 KiB, free: 2.2 GiB)
23/02/19 13:10:52 WARN TaskSetManager: Lost task 0.0 in stage 0.0 (TID 0) (10.14.142.21 executor 1): java.io.FileNotFoundException: File file:/app/data-Feb-19-2023_131049.json does not exist
at org.apache.hadoop.fs.RawLocalFileSystem.deprecatedGetFileStatus(RawLocalFileSystem.java:779)
at org.apache.hadoop.fs.RawLocalFileSystem.getFileLinkStatusInternal(RawLocalFileSystem.java:1100)
at org.apache.hadoop.fs.RawLocalFileSystem.getFileStatus(RawLocalFileSystem.java:769)
at org.apache.hadoop.fs.FilterFileSystem.getFileStatus(FilterFileSystem.java:462)
at org.apache.hadoop.fs.ChecksumFileSystem$ChecksumFSInputChecker.<init>(ChecksumFileSystem.java:160)
at org.apache.hadoop.fs.ChecksumFileSystem.open(ChecksumFileSystem.java:372)
at org.apache.hadoop.fs.FileSystem.open(FileSystem.java:976)
at org.apache.spark.sql.execution.datasources.CodecStreams$.createInputStream(CodecStreams.scala:40)
at org.apache.spark.sql.execution.datasources.CodecStreams$.createInputStreamWithCloseResource(CodecStreams.scala:52)
at org.apache.spark.sql.execution.datasources.json.MultiLineJsonDataSource$.dataToInputStream(JsonDataSource.scala:195)
at org.apache.spark.sql.execution.datasources.json.MultiLineJsonDataSource$.createParser(JsonDataSource.scala:199)
at org.apache.spark.sql.execution.datasources.json.MultiLineJsonDataSource$.$anonfun$infer$4(JsonDataSource.scala:165)
at org.apache.spark.sql.catalyst.json.JsonInferSchema.$anonfun$infer$3(JsonInferSchema.scala:86)
at org.apache.spark.util.Utils$.tryWithResource(Utils.scala:2763)
at org.apache.spark.sql.catalyst.json.JsonInferSchema.$anonfun$infer$2(JsonInferSchema.scala:86)
at scala.collection.Iterator$$anon$11.nextCur(Iterator.scala:486)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:492)
at scala.collection.Iterator.isEmpty(Iterator.scala:387)
at scala.collection.Iterator.isEmpty$(Iterator.scala:387)
at scala.collection.AbstractIterator.isEmpty(Iterator.scala:1431)
at scala.collection.TraversableOnce.reduceLeftOption(TraversableOnce.scala:249)
at scala.collection.TraversableOnce.reduceLeftOption$(TraversableOnce.scala:248)
at scala.collection.AbstractIterator.reduceLeftOption(Iterator.scala:1431)
at scala.collection.TraversableOnce.reduceOption(TraversableOnce.scala:256)
at scala.collection.TraversableOnce.reduceOption$(TraversableOnce.scala:256)
at scala.collection.AbstractIterator.reduceOption(Iterator.scala:1431)
at org.apache.spark.sql.catalyst.json.JsonInferSchema.$anonfun$infer$1(JsonInferSchema.scala:103)
at org.apache.spark.rdd.RDD.$anonfun$mapPartitions$2(RDD.scala:855)
at org.apache.spark.rdd.RDD.$anonfun$mapPartitions$2$adapted(RDD.scala:855)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:136)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:548)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1504)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:551)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)
23/02/19 13:10:52 INFO TaskSetManager: Starting task 0.1 in stage 0.0 (TID 1) (10.14.142.21, executor 1, partition 0, PROCESS_LOCAL, 4602 bytes) taskResourceAssignments Map()
23/02/19 13:10:52 INFO TaskSetManager: Lost task 0.1 in stage 0.0 (TID 1) on 10.14.142.21, executor 1: java.io.FileNotFoundException (File file:/app/data-Feb-19-2023_131049.json does not exist) [duplicate 1]
23/02/19 13:10:52 INFO TaskSetManager: Starting task 0.2 in stage 0.0 (TID 2) (10.14.142.21, executor 1, partition 0, PROCESS_LOCAL, 4602 bytes) taskResourceAssignments Map()
23/02/19 13:10:52 INFO TaskSetManager: Lost task 0.2 in stage 0.0 (TID 2) on 10.14.142.21, executor 1: java.io.FileNotFoundException (File file:/app/data-Feb-19-2023_131049.json does not exist) [duplicate 2]
23/02/19 13:10:52 INFO TaskSetManager: Starting task 0.3 in stage 0.0 (TID 3) (10.14.142.21, executor 1, partition 0, PROCESS_LOCAL, 4602 bytes) taskResourceAssignments Map()
23/02/19 13:10:52 INFO TaskSetManager: Lost task 0.3 in stage 0.0 (TID 3) on 10.14.142.21, executor 1: java.io.FileNotFoundException (File file:/app/data-Feb-19-2023_131049.json does not exist) [duplicate 3]
23/02/19 13:10:52 ERROR TaskSetManager: Task 0 in stage 0.0 failed 4 times; aborting job
23/02/19 13:10:52 INFO TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool
23/02/19 13:10:52 INFO TaskSchedulerImpl: Cancelling stage 0
23/02/19 13:10:52 INFO TaskSchedulerImpl: Killing all running tasks in stage 0: Stage cancelled
23/02/19 13:10:52 INFO DAGScheduler: ResultStage 0 (json at <unknown>:0) failed in 1.128 s due to Job aborted due to stage failure: Task 0 in stage 0.0 failed 4 times, most recent failure: Lost task 0.3 in stage 0.0 (TID 3) (10.14.142.21 executor 1): java.io.FileNotFoundException: File file:/app/data-Feb-19-2023_131049.json does not exist
at org.apache.hadoop.fs.RawLocalFileSystem.deprecatedGetFileStatus(RawLocalFileSystem.java:779)
at org.apache.hadoop.fs.RawLocalFileSystem.getFileLinkStatusInternal(RawLocalFileSystem.java:1100)
at org.apache.hadoop.fs.RawLocalFileSystem.getFileStatus(RawLocalFileSystem.java:769)
at org.apache.hadoop.fs.FilterFileSystem.getFileStatus(FilterFileSystem.java:462)
at org.apache.hadoop.fs.ChecksumFileSystem$ChecksumFSInputChecker.<init>(ChecksumFileSystem.java:160)
at org.apache.hadoop.fs.ChecksumFileSystem.open(ChecksumFileSystem.java:372)
at org.apache.hadoop.fs.FileSystem.open(FileSystem.java:976)
at org.apache.spark.sql.execution.datasources.CodecStreams$.createInputStream(CodecStreams.scala:40)
at org.apache.spark.sql.execution.datasources.CodecStreams$.createInputStreamWithCloseResource(CodecStreams.scala:52)
at org.apache.spark.sql.execution.datasources.json.MultiLineJsonDataSource$.dataToInputStream(JsonDataSource.scala:195)
at org.apache.spark.sql.execution.datasources.json.MultiLineJsonDataSource$.createParser(JsonDataSource.scala:199)
at org.apache.spark.sql.execution.datasources.json.MultiLineJsonDataSource$.$anonfun$infer$4(JsonDataSource.scala:165)
at org.apache.spark.sql.catalyst.json.JsonInferSchema.$anonfun$infer$3(JsonInferSchema.scala:86)
at org.apache.spark.util.Utils$.tryWithResource(Utils.scala:2763)
at org.apache.spark.sql.catalyst.json.JsonInferSchema.$anonfun$infer$2(JsonInferSchema.scala:86)
at scala.collection.Iterator$$anon$11.nextCur(Iterator.scala:486)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:492)
at scala.collection.Iterator.isEmpty(Iterator.scala:387)
at scala.collection.Iterator.isEmpty$(Iterator.scala:387)
at scala.collection.AbstractIterator.isEmpty(Iterator.scala:1431)
at scala.collection.TraversableOnce.reduceLeftOption(TraversableOnce.scala:249)
at scala.collection.TraversableOnce.reduceLeftOption$(TraversableOnce.scala:248)
at scala.collection.AbstractIterator.reduceLeftOption(Iterator.scala:1431)
at scala.collection.TraversableOnce.reduceOption(TraversableOnce.scala:256)
at scala.collection.TraversableOnce.reduceOption$(TraversableOnce.scala:256)
at scala.collection.AbstractIterator.reduceOption(Iterator.scala:1431)
at org.apache.spark.sql.catalyst.json.JsonInferSchema.$anonfun$infer$1(JsonInferSchema.scala:103)
at org.apache.spark.rdd.RDD.$anonfun$mapPartitions$2(RDD.scala:855)
at org.apache.spark.rdd.RDD.$anonfun$mapPartitions$2$adapted(RDD.scala:855)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:136)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:548)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1504)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:551)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)
This is my code to download the file and and print its path
def find_files(self, filename, search_path):
result = []
# Wlaking top-down from the root
for root, dir, files in os.walk(search_path):
if filename in files:
result.append(os.path.join(root, filename))
return result
def downloadData(self, access_token, data):
headers = {
'Content-Type': 'application/json',
'Charset': 'UTF-8',
'Authorization': f'Bearer {access_token}'
}
try:
response = requests.post(self.kyc_url, data=json.dumps(data), headers=headers)
response.raise_for_status()
logger.debug("received kyc data")
response_filename = ("data-" + time.strftime('%b-%d-%Y_%H%M%S', time.localtime()) + ".json")
with open(response_filename, 'w', encoding='utf-8') as f:
json.dump(response.json(), f, ensure_ascii=False, indent=4)
f.close()
print("FILE IS DOWNLOADED")
print(self.find_files(response_filename, "/"))
except requests.exceptions.HTTPError as err:
logger.error("failed to fetch kyc data")
raise SystemExit(err)
return response_filename
This is my code to read the file and upload to minio
def load(spark: SparkSession, json_file_path: str, destination_path: str) -> None:
df = spark.read.option("multiline", "true").json(json_file_path)
df.write.format("delta").save(f"s3a://{destination_path}")
I'm running spark in k8s with spark operator.
This is my SparkApplication manifest
apiVersion: "sparkoperator.k8s.io/v1beta2"
kind: SparkApplication
metadata:
name: myApp
namespace: demo
spec:
type: Python
pythonVersion: "3"
mode: cluster
image: "myImage"
imagePullPolicy: Always
mainApplicationFile: local:///app/main.py
sparkVersion: "3.3.1"
restartPolicy:
type: OnFailure
onFailureRetries: 3
onFailureRetryInterval: 10
onSubmissionFailureRetries: 5
onSubmissionFailureRetryInterval: 20
timeToLiveSeconds: 86400
deps:
packages:
- io.delta:delta-core_2.12:2.2.0
- org.apache.hadoop:hadoop-aws:3.3.1
driver:
env:
- name: NAMESPACE
value: demo
cores: 2
coreLimit: "2000m"
memory: "2048m"
labels:
version: 3.3.1
serviceAccount: spark-driver
executor:
cores: 4
instances: 1
memory: "4096m"
coreRequest: "500m"
coreLimit: "4000m"
labels:
version: 3.3.1
dynamicAllocation:
enabled: false
Can someone please point out what I am doing wrong ?
Thank you

Answer 1

If you are running in cluster mode then you need your input files to be shared on a shared FS like HDFS or S3 but not on local FS, since both of driver and executors should have access to the input file.