Running python as root using new pyenv and venv - python-3.x

Python applications currently are being run as root.
These applications are in a cron job.
They are called using /usr/bin/python3 app1.py
I want to setup a new venv for a new application using a specific python version.
Note: All under root.
I could use pyenv to setup python3 version.
I could use venv to setup packages.
How does one setup cron job to run the application?
/my/path/myapp.py
I have never run non-interactively.

Just create a cron file /etc/cron.d/your_cron in which you either set HOME variable (defining the working directory) or run cd /my/path. Then you simply provide the commands for pyenv and venv. The file should then look something like this:
HOME=/my/app
1 0 * * * pyenv local <version> && python3 -m venv <virtual env> && python3 app.py
or
1 0 * * * cd /my/path && pyenv local <version> && python3 -m venv <virtual env> && python3 app.py

Related

Python virtualenv is not activated when the ubuntu docker container is started [duplicate]

I have a Dockerfile where I try to activate python virtualenv after what, it should install all dependencies within this env. However, everything still gets installed globally. I used different approaches and non of them worked. I also do not get any errors. Where is a problem?
1.
ENV PATH $PATH:env/bin
2.
ENV PATH $PATH:env/bin/activate
3.
RUN . env/bin/activate
I also followed an example of a Dockerfile config for the python-runtime image on Google Cloud, which is basically the same stuff as above.
Setting these environment variables are the same as running source /env/bin/activate.
ENV VIRTUAL_ENV /env
ENV PATH /env/bin:$PATH
Additionally, what does ENV VIRTUAL_ENV /env mean and how it is used?
You don't need to use virtualenv inside a Docker Container.
virtualenv is used for dependency isolation. You want to prevent any dependencies or packages installed from leaking between applications. Docker achieves the same thing, it isolates your dependencies within your container and prevent leaks between containers and between applications.
Therefore, there is no point in using virtualenv inside a Docker Container unless you are running multiple apps in the same container, if that's the case I'd say that you're doing something wrong and the solution would be to architect your app in a better way and split them up in multiple containers.
EDIT 2022: Given this answer get a lot of views, I thought it might make sense to add that now 4 years later, I realized that there actually is valid usages of virtual environments in Docker images, especially when doing multi staged builds:
FROM python:3.9-slim as compiler
ENV PYTHONUNBUFFERED 1
WORKDIR /app/
RUN python -m venv /opt/venv
# Enable venv
ENV PATH="/opt/venv/bin:$PATH"
COPY ./requirements.txt /app/requirements.txt
RUN pip install -Ur requirements.txt
FROM python:3.9-slim as runner
WORKDIR /app/
COPY --from=compiler /opt/venv /opt/venv
# Enable venv
ENV PATH="/opt/venv/bin:$PATH"
COPY . /app/
CMD ["python", "app.py", ]
In the Dockerfile example above, we are creating a virtualenv at /opt/venv and activating it using an ENV statement, we then install all dependencies into this /opt/venv and can simply copy this folder into our runner stage of our build. This can help with with minimizing docker image size.
There are perfectly valid reasons for using a virtualenv within a container.
You don't necessarily need to activate the virtualenv to install software or use it. Try invoking the executables directly from the virtualenv's bin directory instead:
FROM python:2.7
RUN virtualenv /ve
RUN /ve/bin/pip install somepackage
CMD ["/ve/bin/python", "yourcode.py"]
You may also just set the PATH environment variable so that all further Python commands will use the binaries within the virtualenv as described in https://pythonspeed.com/articles/activate-virtualenv-dockerfile/
FROM python:2.7
RUN virtualenv /ve
ENV PATH="/ve/bin:$PATH"
RUN pip install somepackage
CMD ["python", "yourcode.py"]
Setting this variables
ENV VIRTUAL_ENV /env
ENV PATH /env/bin:$PATH
is not exactly the same as just running
RUN . env/bin/activate
because activation inside single RUN will not affect any lines below that RUN in Dockerfile. But setting environment variables through ENV will activate your virtual environment for all RUN commands.
Look at this example:
RUN virtualenv env # setup env
RUN which python # -> /usr/bin/python
RUN . /env/bin/activate && which python # -> /env/bin/python
RUN which python # -> /usr/bin/python
So if you really need to activate virtualenv for the whole Dockerfile you need to do something like this:
RUN virtualenv env
ENV VIRTUAL_ENV /env # activating environment
ENV PATH /env/bin:$PATH # activating environment
RUN which python # -> /env/bin/python
Although I agree with Marcus that this is not the way of doing with Docker, you can do what you want.
Using the RUN command of Docker directly will not give you the answer as it will not execute your instructions from within the virtual environment. Instead squeeze the instructions executed in a single line using /bin/bash. The following Dockerfile worked for me:
FROM python:2.7
RUN virtualenv virtual
RUN /bin/bash -c "source /virtual/bin/activate && pip install pyserial && deactivate"
...
This should install the pyserial module only on the virtual environment.
If you your using python 3.x :
RUN pip install virtualenv
RUN virtualenv -p python3.5 virtual
RUN /bin/bash -c "source /virtual/bin/activate"
If you are using python 2.x :
RUN pip install virtualenv
RUN virtualenv virtual
RUN /bin/bash -c "source /virtual/bin/activate"
Consider a migration to pipenv - a tool which will automate virtualenv and pip interactions for you. It's recommended by PyPA.
Reproduce environment via pipenv in a docker image is very simple:
FROM python:3.7
RUN pip install pipenv
COPY src/Pipfile* ./
RUN pipenv install --deploy
...

virtualenv not found in path

For some reason virtualenv is not in my path after installing with pip3. I have a fresh install of ubuntu 16.04.
sudo apt-get install pip3
pip3 install virtualenv
virtualenv # command not found!!!
edit: I also installed jupyter notebook with pip3 and its not in the path either.
Python executables are placed in ~/.local/bin/ on Ubuntu 16.04.
This location is not in $PATH so edit your .bashrc to append it there.
# .bashrc file
export PATH=$PATH:~/.local/bin
This is Ubuntu only (didn't check other distros)
TL;DR (if you used pip to install pkg) run following command
$ source ~/.profile
If you examine .profile there is a script looks like following.
(18 version. 16 version has something different)
# set PATH so it includes user's private bin if it exists
if [ -d "$HOME/.local/bin" ] ; then
PATH="$HOME/.local/bin:$PATH"
fi
which means everything under ~/.local/bin will be added to PATH.
So, if you used pip to install pkg and try to run from prompt. As long as pip created file under the folder it will let you run commands without full path.
You can restart the session too. Whichever you feel comfortable with.

Virtualenv - workon command not found

I followed these steps to set up virtualenv + virtualenvwrapper:
$ sudo apt-get install python3-pip
$ sudo pip3 install virtualenv
$ sudo pip3 install virtualenvwrapper
$ mkdir ~/.virtualenvs
$ export WORKON_HOME=~/.virtualenvs
$ VIRTUALENVWRAPPER_PYTHON='/usr/bin/python3'
$ source /usr/local/bin/virtualenvwrapper.sh
$ mkvirtualenv venv
$ virtualenv venv
So far it was working fine but I restarted the shell and then I tried workon venv and now it says: command not found
So far it was working fine but I restarted the shell
The reason is because you restarted the shell.
If you want this to work with each shell, you'll need to add these to your ~/.bashrc file:
export WORKON_HOME=~/.virtualenvs
VIRTUALENVWRAPPER_PYTHON='/usr/bin/python3'
source /usr/local/bin/virtualenvwrapper.sh
After adding this, you'll want to source ~/.bashrc so the changes take effect. You'll find that you have access to virtualenvwrapper facilities in each new shell.
You need to add commands
export WORKON_HOME=~/.virtualenvs
VIRTUALENVWRAPPER_PYTHON='/usr/bin/python3'
source /usr/local/bin/virtualenvwrapper.sh
to your ~/.bashrc file. So that whenever you start shell these commands are loaded automatically.
For the reference.

How to execute a sequence of terminal(Ubuntu) commands without pressing the return key

I've started to learn Ubuntu server administration for my own projects. For that purpose I created a config file, which I run on a new server instance for basic installation - for example to install git, nginx, etc.
So, for example I copy into a terminal window 3 lines:
pip install flask
pip install gunicorn
pip install pymongo
and the first, and the second will be executed automatically, the the third one will wait for me))
It is possible somehow to execute all this sequence automatically, without pressing the return button for the last command?
You can write a shell script with the following contents and save as myscript.sh:
#!/bin/bash
pip install flask
pip install gunicorn
pip install pymongo
Give it execute permissions by:
chmod u+x myscript.sh
Execute it by:
./myscript.sh
you'd better do a bash script like :
#!/bin/sh
pip install flask
pip install gunicorn
pip install pymongo
then made it executable with chmod +x script.sh and run ./script.sh
You can concatenate commands in one line using semi-colon and then copy/paste all the line together:
pip install flask; pip install gunicorn; pip install pymongo

How do I remove/delete a virtualenv?

I created an environment with the following command: virtualenv venv --distribute
I cannot remove it with the following command: rmvirtualenv venv -
This is part of virtualenvwrapper as mentioned in answer below for virtualenvwrapper
I do an lson my current directory and I still see venv
The only way I can remove it seems to be: sudo rm -rf venv
Note that the environment is not active. I'm running Ubuntu 11.10. Any ideas? I've tried rebooting my system to no avail.
"The only way I can remove it seems to be: sudo rm -rf venv"
That's it! There is no command for deleting your virtual environment. Simply deactivate it and rid your application of its artifacts by recursively removing it.
Note that this is the same regardless of what kind of virtual environment you are using. virtualenv, venv, Anaconda environment, pyenv, pipenv are all based the same principle here.
Just to echo what #skytreader had previously commented, rmvirtualenv is a command provided by virtualenvwrapper, not virtualenv. Maybe you didn't have virtualenvwrapper installed?
See VirtualEnvWrapper Command Reference for more details.
Use rmvirtualenv
Remove an environment, in the $WORKON_HOME.
Syntax:
rmvirtualenv ENVNAME
You must use deactivate before removing the current environment.
$ rmvirtualenv my_env
Reference: http://virtualenvwrapper.readthedocs.io/en/latest/command_ref.html
You can remove all the dependencies by recursively uninstalling all of them and then delete the venv.
Edit including Isaac Turner commentary
source venv/bin/activate
pip freeze > requirements.txt
pip uninstall -r requirements.txt -y
deactivate
rm -r venv/
If you are using pyenv, it is possible to delete your virtual environment:
$ pyenv virtualenv-delete <name>
Simply delete the virtual environment from the system:
rm -rf venv
(There's no special command for it)
from virtualenv's official document https://virtualenv.pypa.io/en/latest/user_guide.html
Removing an Environment
Removing a virtual environment is simply done by deactivating it and deleting the environment folder with all its contents:
(ENV)$ deactivate
$ rm -r /path/to/ENV
1. Remove the Python environment
There is no command to remove a virtualenv so you need to do that by hand, you will need to deactivate if you have it on and remove the folder:
deactivate
rm -rf <env path>
2. Create an env. with another Python version
When you create an environment the python uses the current version by default, so if you want another one you will need to specify at the moment you are creating it. To make and env. with Python 3.X called MyEnv just type:
python3.X -m venv MyEnv
Now to make with Python 2.X use virtualenv instead of venv:
python2.X -m virtualenv MyEnv
3. List all Python versions on my machine
If any of the previous lines of code didn't worked you probably don't have the specific version installed. First list all your versions with:
ls -ls /usr/bin/python*
If you didn't find it, install Python 3.X using apt-get:
sudo apt-get install python3.X
I used pyenv uninstall my_virt_env_name to delete the virual environment.
Note: I'm using pyenv-virtualenv installed through the install script.
The following command works for me.
rm -rf /path/to/virtualenv
If you are a Windows user and you are using conda to manage the environment in Anaconda prompt, you can do the following:
Make sure you deactivate the virtual environment or restart Anaconda Prompt. Use the following command to remove virtual environment:
$ conda env remove --name $MyEnvironmentName
Alternatively, you can go to the
C:\Users\USERNAME\AppData\Local\Continuum\anaconda3\envs\MYENVIRONMENTNAME
(that's the default file path) and delete the folder manually.
Actually requires two deletions.
The project folder which everyone in this thread already said you simply delete manually or using rm -r projectfoldername
But then you also need to delete the actual virtualenv located in macOS /Users/edison/.pyenv/versions/3.8.0/envs/myspecialenv.
You can do that by doing pyenv virtualenv-delete myspecialenv or manual removal.
if you are windows user, then it's in C:\Users\your_user_name\Envs. You can delete it from there.
Also try in command prompt rmvirtualenv environment name.
I tried with command prompt so it said deleted but it was still existed. So i manually delete it.
cd \environmentfolder_name\Scripts\deactivate.bat
deactivate is the command you are looking for. Like what has already been said, there is no command for deleting your virtual environment. Simply deactivate it!
If you're a windows user, you can also delete the environment by going to: C:/Users/username/Anaconda3/envs Here you can see a list of virtual environment and delete the one that you no longer need.
If you are using pyenv virtualenv < https://github.com/pyenv/pyenv > to centrally manage python versions and virtual environment the solution would be
pyenv uninstall some_env
(Assuming that you have set up your bash .szh profile correctly.)
The solution to this issue is also answered here:
https://github.com/pyenv/pyenv-virtualenv/issues/17
Hope this helps 👍🏻
Just use Anaconda Navigator to remove selected env.
It is possible that some resources will be activated, making it impossible to just delete the directory. All Python processes should be stopped in advance:
pkill -9 python
rm -rf venv
You can follow these steps to remove all the files associated with virtualenv and then reinstall the virtualenv again and using it
cd {python virtualenv folder}
find {broken virtualenv}/ -type l ## to list out all the links
deactivate ## deactivate if virtualenv is active
find {broken virtualenv}/ -type l -delete ## to delete the broken links
virtualenv {broken virtualenv} --python=python3 ## recreate links to OS's python
workon {broken virtualenv} ## activate & workon the fixed virtualenv
pip3 install ... {other packages required for the project}
For the new versions do:
conda deactivate
conda env remove -n env_name
step 1: delete virtualenv virtualenvwrapper by copy and paste the following command below:
$ sudo pip uninstall virtualenv virtualenvwrapper
step 2: go to .bashrc and delete all virtualenv and virtualenvwrapper
open terminal:
$ sudo nano .bashrc
scroll down and you will see the code bellow then delete it.
# virtualenv and virtualenvwrapper
export WORKON_HOME=$HOME/.virtualenvs
export VIRTUALENVWRAPPER_PYTHON=/usr/bin/python3
source /usr/local/bin/virtualenvwrapper.sh
next, source the .bashrc:
$ source ~/.bashrc
FINAL steps: without terminal/shell go to /home and find .virtualenv (I forgot the name so if your find similar to .virtualenv or .venv just delete it. That will work.

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