upload egg file raise an DistributionNotFound exception for requirements package - python-3.x

Description
When I tried to deploy an egg file to the scrapyd server within a docker container, it always returned a DistributionNotFound error for each external package.
I tried both with curl and scrapyd-deploy
Steps to Reproduce
python setup.py bdist_uberegg -r requirements.txt
curl http://localhost:13334/addversion.json -F project=pr_reviews -F version=1.0.0 -F egg=.\dist\project-1.0-py3.10.egg
or
scrapyd-deploy --include-dependencies
Actual behavior: [What actually happens]
$ curl http://localhost:13334/addversion.json -F project=pr_reviews -F version=re1 -F egg=#".\dist\project-1.0-py3.10.egg"
{"node_name": "e9e273febed8", "status": "error", "message": "/usr/local/lib/python3.9/dist-packages/scrapy/utils/project.py:81: ScrapyDeprecationWarning: Use of environment variables prefixed with SCRAPY_ to override settings is deprecated. The following environment variables are currently defined: EGG_VERSION\n warnings.warn(\nTraceback (most recent call last):\n File \"/usr/lib/python3.9/runpy.py\", line 197, in _run_module_as_main\n return _run_code(code, main_globals, None,\n File \"/usr/lib/python3.9/runpy.py\", line 87, in _run_code\n exec(code, run_globals)\n File \"/usr/local/lib/python3.9/dist-packages/scrapyd/runner.py\", line 46, in <module>\n main()\n File \"/usr/local/lib/python3.9/dist-packages/scrapyd/runner.py\", line 43, in main\n execute()\n File \"/usr/local/lib/python3.9/dist-packages/scrapy/cmdline.py\", line 144, in execute\n cmd.crawler_process = CrawlerProcess(settings)\n File \"/usr/local/lib/python3.9/dist-packages/scrapy/crawler.py\", line 290, in __init__\n super().__init__(settings)\n File \"/usr/local/lib/python3.9/dist-packages/scrapy/crawler.py\", line 167, in __init__\n self.spider_loader = self._get_spider_loader(settings)\n
File \"/usr/local/lib/python3.9/dist-packages/scrapy/crawler.py\", line 161, in _get_spider_loader\n return loader_cls.from_settings(settings.frozencopy())\n File \"/usr/local/lib/python3.9/dist-packages/scrapy/spiderloader.py\", line 67, in from_settings\n return cls(settings)\n File \"/usr/local/lib/python3.9/dist-packages/scrapy/spiderloader.py\", line 24, in __init__\n self._load_all_spiders()\n File \"/usr/local/lib/python3.9/dist-packages/scrapy/spiderloader.py\", line 51, in _load_all_spiders\n for module in walk_modules(name):\n File \"/usr/local/lib/python3.9/dist-packages/scrapy/utils/misc.py\", line 88, in walk_modules\n submod = import_module(fullpath)\n File \"/usr/lib/python3.9/importlib/__init__.py\", line 127, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n File \"<frozen importlib._bootstrap>\", line 1030, in _gcd_import\n File \"<frozen importlib._bootstrap>\", line 1007, in _find_and_load\n File \"<frozen importlib._bootstrap>\", line 986, in _find_and_load_unlocked\n File \"<frozen importlib._bootstrap>\", line 664, in _load_unlocked\n File \"<frozen importlib._bootstrap>\", line 627, in _load_backward_compatible\n File \"<frozen zipimport>\", line 259, in load_module\n File \"/tmp/pr_reviews-re1-vukl7x51.egg/pr_reviews/spiders/ReviewCrawler.py\", line 2, in <module>\n File \"<frozen importlib._bootstrap>\", line 1007, in _find_and_load\n File \"<frozen importlib._bootstrap>\", line 986, in _find_and_load_unlocked\n File \"<frozen importlib._bootstrap>\", line 664, in _load_unlocked\n File \"<frozen importlib._bootstrap>\", line 627, in _load_backward_compatible\n File \"<frozen zipimport>\", line 259, in load_module\n File \"/tmp/pr_reviews-re1-vukl7x51.egg/pr_reviews/items.py\", line 4, in <module>\n File \"<frozen importlib._bootstrap>\", line 1007, in _find_and_load\n File \"<frozen importlib._bootstrap>\", line 986, in _find_and_load_unlocked\n File \"<frozen importlib._bootstrap>\", line 664, in _load_unlocked\n File \"<frozen importlib._bootstrap>\", line 627, in _load_backward_compatible\n File \"<frozen zipimport>\", line 259, in load_module\n File \"/tmp/pr_reviews-re1-vukl7x51.egg/pycountry/__init__.py\", line 13, in <module>\n File \"/usr/local/lib/python3.9/dist-packages/pkg_resources/__init__.py\", line 478, in get_distribution\n dist = get_provider(dist)\n File \"/usr/local/lib/python3.9/dist-packages/pkg_resources/__init__.py\", line 354, in get_provider\n return working_set.find(moduleOrReq) or require(str(moduleOrReq))[0]\n File \"/usr/local/lib/python3.9/dist-packages/pkg_resources/__init__.py\", line 909, in require\n needed = self.resolve(parse_requirements(requirements))\n File \"/usr/local/lib/python3.9/dist-packages/pkg_resources/__init__.py\", line 795, in resolve\n raise DistributionNotFound(req, requirers)\npkg_resources.DistributionNotFound: The 'pycountry' distribution was not found and is required by the application\n"}
setup.py
from setuptools import setup, find_packages
setup(
name='project',
version='1.0',
packages=find_packages(),
install_requires=[
"itemadapter",
"langdetect",
"pycountry",
"scrapy",
"setuptools",
"scrapy_zyte_smartproxy",
"scrapy_user_agents"
],
entry_points={'scrapy': ['settings = pr_reviews.settings']},
)
requirements.txt
itemadapter==0.6.0
langdetect==1.0.9
pycountry==22.3.5
scrapy==2.6.1
setuptools==63.1.0
scrapy_zyte_smartproxy==2.1.0
scrapy_user_agents==0.1.1
Scrapd server
FROM ubuntu:20.04
ENV DEBIAN_FRONTEND noninteractive
RUN apt-get update -qq \
&& apt-get install -y tini git python3.9 python3.9-dev python3.9-distutils curl python3.9-venv build-essential libxml2-dev libxslt1-dev zlib1g-dev libffi-dev libssl-dev nginx apache2-utils \
&& apt-get clean \
&& rm -rf /var/lib/apt/lists/*
RUN curl https://bootstrap.pypa.io/get-pip.py -o get-pip.py
RUN python3.9 get-pip.py
ADD requirements.txt /
RUN python3.9 -m pip install -r /requirements.txt
RUN python3.9 -m pip install -e git+https://github.com/necrophcodr/chaperone.git#egg=chaperone
RUN mkdir /etc/chaperone.d
COPY ./scrapyd.conf /etc/scrapyd/
VOLUME /etc/scrapyd/ /var/lib/scrapyd/
EXPOSE 6800
ENTRYPOINT ["tini", "--"]
CMD ["scrapyd", "--pidfile="]

Related

Issues with AWS Lambda Docker Container (permission denied)

I am deploying a Docker container with AWS Lambda which executes a machine learning model. But whenever I attempt to load the saved checkpoints, I am getting a permission denied message when attempting to read the local filesystem or a no directory found based on where I am storing the model...?
Here is the relevant Dockerfile:
FROM public.ecr.aws/lambda/python:3.8
# copy requirements.txt file to the container
COPY requirements.txt ./
# upgrade pip and install the python requirements from requirements.txt
RUN python3.8 -m pip install \
--upgrade pip
RUN python3.8 -m pip install \
-r requirements.txt
# Copy function code
COPY app.py ./
# Install the runtime interface client
RUN python3.8 -m pip install \
awslambdaric
# clean up image for small container
RUN find . -type d -name "tests" -exec rm -rf {} +
RUN find . -type d -name "__pycache__" -exec rm -rf {} +
RUN find . -type d -name "include" -exec rm -rf {} +
RUN rm -rf ./{caffe2,wheel,wheel-*,pkg_resources,boto*,aws*,pip,pip-*,pipenv,setuptools}
RUN rm -rf ./{*.egg-info,*.dist-info}
RUN find . -name \*.pyc -delete
RUN find . -type d -name "test" -exec rm -rf {} +
RUN ls -R -al
# update linux libraries
RUN yum update -y
# install python3 and unzip
RUN yum install -y python3 unzip
# pull model files
RUN mkdir ./model
RUN curl https://somewhere.com/model.zip -o ./model/model.zip
RUN unzip ./model/model.zip -d ./model
RUN chmod 644 ./model
RUN chmod -R 644 ./model/*
RUN rm ./model/model.zip
WORKDIR ./
ENTRYPOINT [ "python3", "-m", "awslambdaric" ]
CMD [ "app.lambda_handler" ]
And the app.py:
from __future__ import print_function
import json, time
import urllib.request
from jose import jwk, jwt
from jose.utils import base64url_decode
from sentence_transformers import SentenceTransformer, util
model = ModelFunction('/model')
def lambda_handler(event, context):
body = json.loads(event['body'])
token = body['jwttoken']
utterance = body['utterance']
comparestring = body['comparestring']
# generate embeddings for each phrase
embeddings1 = model.encode(utterance, convert_to_tensor=True)
embeddings2 = model.encode(comparestring, convert_to_tensor=True)
# compute score
score = util.embeddings(embeddings1, embeddings2)
# output score
print("Score:")
print(score.item())
return {
"statusCode": 200,
"score": json.dums(score.item())
}
# the following is useful to make this script executable in both
# AWS Lambda and any other local environments
if __name__ == '__main__':
event = {
'token': '',
'email': 'somewhere#somewhere.com'}
lambda_handler(event, None)
A couple of the relevant error messages:
[ERROR] PermissionError: [Errno 13] Permission denied: './model/modules.json'
Traceback (most recent call last):
File "/var/lang/lib/python3.8/imp.py", line 234, in load_module
return load_source(name, filename, file)
File "/var/lang/lib/python3.8/imp.py", line 171, in load_source
module = _load(spec)
File "<frozen importlib._bootstrap>", line 702, in _load
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 848, in exec_module
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File "/var/task/app.py", line 8, in <module>
model = model('./model')
File "/var/lang/lib/python3.8/site-packages/model/model.py", line 115, in __init__
with open(os.path.join(model_path, 'modules.json')) as fIn:
and
[ERROR] FileNotFoundError: [Errno 2] No such file or directory: '/home/sbx_user1051/.cache/model'
Traceback (most recent call last):
File "/var/lang/lib/python3.8/imp.py", line 234, in load_module
return load_source(name, filename, file)
File "/var/lang/lib/python3.8/imp.py", line 171, in load_source
module = _load(spec)
File "<frozen importlib._bootstrap>", line 702, in _load
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 848, in exec_module
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File "/var/task/app.py", line 8, in <module>
model = model('/model')
File "/var/lang/lib/python3.8/site-packages/model/model.py", line 101, in __init__
shutil.rmtree(model_path)
File "/var/lang/lib/python3.8/shutil.py", line 709, in rmtree
onerror(os.lstat, path, sys.exc_info())
File "/var/lang/lib/python3.8/shutil.py", line 707, in rmtree
orig_st = os.lstat(path)
Any ideas? I think I am not storing the model checkpoints in the correct directory? The above logs have been somewhat scrubbed due to NDA etc.
Try running:
chmod 644 $(find . -type f)
chmod 755 $(find . -type d)
on the files you're trying to deploy.
As the AWS Docs say, there may be a permissions issue if the files aren't set to be executable by any user.

Ansible Zypper module error when I try to update packages

Good day all!
I have written a very simple Ansible Role to update all packages to Suse Leap 15.2:
- name: All packages updated
package:
name: "*"
state: latest
but it seems that the Zypper module has a problem with it:
TASK [system_update : All packages updated] ***************************************************************************************************************************************************************************************************
task path: /home/merlin/ansible-kt-linux/roles/system_update/tasks/main.yml:10
<localhost> ESTABLISH LOCAL CONNECTION FOR USER: merlin
<localhost> EXEC /bin/sh -c 'echo ~merlin && sleep 0'
<localhost> EXEC /bin/sh -c '( umask 77 && mkdir -p "` echo /home/merlin/.ansible/tmp/ansible-tmp-1617094154.778992-48329012899811 `" && echo ansible-tmp-1617094154.778992-48329012899811="` echo /home/merlin/.ansible/tmp/ansible-tmp-1617094154.778992-48329012899811 `" ) && sleep 0'
Using module file /usr/lib/python3.6/site-packages/ansible/modules/packaging/os/zypper.py
<localhost> PUT /home/merlin/.ansible/tmp/ansible-local-5239dx5tukgw/tmpvf5upp37 TO /home/merlin/.ansible/tmp/ansible-tmp-1617094154.778992-48329012899811/AnsiballZ_zypper.py
<localhost> EXEC /bin/sh -c 'chmod u+x /home/merlin/.ansible/tmp/ansible-tmp-1617094154.778992-48329012899811/ /home/merlin/.ansible/tmp/ansible-tmp-1617094154.778992-48329012899811/AnsiballZ_zypper.py && sleep 0'
<localhost> EXEC /bin/sh -c 'sudo -H -S -n -u root /bin/sh -c '"'"'echo BECOME-SUCCESS-qfmrjmpwqhyapufsdqunaohtmlxjucdk ; /usr/bin/python /home/merlin/.ansible/tmp/ansible-tmp-1617094154.778992-48329012899811/AnsiballZ_zypper.py'"'"' && sleep 0'
<localhost> EXEC /bin/sh -c 'rm -f -r /home/merlin/.ansible/tmp/ansible-tmp-1617094154.778992-48329012899811/ > /dev/null 2>&1 && sleep 0'
The full traceback is:
Traceback (most recent call last):
File "/home/merlin/.ansible/tmp/ansible-tmp-1617094154.778992-48329012899811/AnsiballZ_zypper.py", line 102, in <module>
_ansiballz_main()
File "/home/merlin/.ansible/tmp/ansible-tmp-1617094154.778992-48329012899811/AnsiballZ_zypper.py", line 94, in _ansiballz_main
invoke_module(zipped_mod, temp_path, ANSIBALLZ_PARAMS)
File "/home/merlin/.ansible/tmp/ansible-tmp-1617094154.778992-48329012899811/AnsiballZ_zypper.py", line 40, in invoke_module
runpy.run_module(mod_name='ansible.modules.packaging.os.zypper', init_globals=None, run_name='__main__', alter_sys=True)
File "/usr/lib64/python2.7/runpy.py", line 188, in run_module
fname, loader, pkg_name)
File "/usr/lib64/python2.7/runpy.py", line 82, in _run_module_code
mod_name, mod_fname, mod_loader, pkg_name)
File "/usr/lib64/python2.7/runpy.py", line 72, in _run_code
exec code in run_globals
File "/tmp/ansible_zypper_payload_jYlnfB/ansible_zypper_payload.zip/ansible/modules/packaging/os/zypper.py", line 195, in <module>
ImportError: No module named xml
fatal: [localhost]: FAILED! => {
"changed": false,
"module_stderr": "Traceback (most recent call last):\n File \"/home/merlin/.ansible/tmp/ansible-tmp-1617094154.778992-48329012899811/AnsiballZ_zypper.py\", line 102, in <module>\n _ansiballz_main()\n File \"/home/merlin/.ansible/tmp/ansible-tmp-1617094154.778992-48329012899811/AnsiballZ_zypper.py\", line 94, in _ansiballz_main\n invoke_module(zipped_mod, temp_path, ANSIBALLZ_PARAMS)\n File \"/home/merlin/.ansible/tmp/ansible-tmp-1617094154.778992-48329012899811/AnsiballZ_zypper.py\", line 40, in invoke_module\n runpy.run_module(mod_name='ansible.modules.packaging.os.zypper', init_globals=None, run_name='__main__', alter_sys=True)\n File \"/usr/lib64/python2.7/runpy.py\", line 188, in run_module\n fname, loader, pkg_name)\n File \"/usr/lib64/python2.7/runpy.py\", line 82, in _run_module_code\n mod_name, mod_fname, mod_loader, pkg_name)\n File \"/usr/lib64/python2.7/runpy.py\", line 72, in _run_code\n exec code in run_globals\n File \"/tmp/ansible_zypper_payload_jYlnfB/ansible_zypper_payload.zip/ansible/modules/packaging/os/zypper.py\", line 195, in <module>\nImportError: No module named xml\n",
"module_stdout": "",
"msg": "MODULE FAILURE\nSee stdout/stderr for the exact error",
"rc": 1
}
PLAY RECAP ************************************************************************************************************************************************************************************************************************************
localhost : ok=2 changed=0 unreachable=0 failed=1 skipped=0 rescued=0 ignored=0
unfortunately I can't read from this what exactly the problem is. Do any of you know the problem?
solved it with shell:
- name: "Install python-xml on Suse"
shell: zypper -n install python-xml

lief package error while installing MOBSF

Building wheel for lief (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-vgv9vwph/lief/setup.py'"'"'; file='"'"'/tmp/pip-install-vgv9vwph/lief/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-7w2iswl4
cwd: /tmp/pip-install-vgv9vwph/lief/
Complete output (46 lines):
0.10.1
running bdist_wheel
running build
running build_ext
Traceback (most recent call last):
File "/tmp/pip-install-vgv9vwph/lief/setup.py", line 72, in run
subprocess.check_output(['cmake', '--version'])
File "/usr/lib/python3.8/subprocess.py", line 411, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
File "/usr/lib/python3.8/subprocess.py", line 489, in run
with Popen(*popenargs, **kwargs) as process:
File "/usr/lib/python3.8/subprocess.py", line 854, in init
self._execute_child(args, executable, preexec_fn, close_fds,
File "/usr/lib/python3.8/subprocess.py", line 1702, in _execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: 'cmake'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "", line 1, in
File "/tmp/pip-install-vgv9vwph/lief/setup.py", line 363, in
setup(
File "/home/kali/.local/lib/python3.8/site-packages/setuptools/init.py", line 153, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python3.8/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/lib/python3.8/distutils/dist.py", line 966, in run_commands
self.run_command(cmd)
File "/usr/lib/python3.8/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 223, in run
self.run_command('build')
File "/usr/lib/python3.8/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.8/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/usr/lib/python3.8/distutils/command/build.py", line 135, in run
self.run_command(cmd_name)
File "/usr/lib/python3.8/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.8/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/tmp/pip-install-vgv9vwph/lief/setup.py", line 74, in run
raise RuntimeError("CMake must be installed to build the following extensions: " +
RuntimeError: CMake must be installed to build the following extensions: lief
ERROR: Failed building wheel for lief
Running setup.py clean for lief
Failed to build lief
Installing collected packages: lief
Running setup.py install for lief ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-vgv9vwph/lief/setup.py'"'"'; file='"'"'/tmp/pip-install-vgv9vwph/lief/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-hb45g1s1/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/kali/.local/include/python3.8/lief
cwd: /tmp/pip-install-vgv9vwph/lief/
Complete output (48 lines):
0.10.1
running install
running build
running build_ext
Traceback (most recent call last):
File "/tmp/pip-install-vgv9vwph/lief/setup.py", line 72, in run
subprocess.check_output(['cmake', '--version'])
File "/usr/lib/python3.8/subprocess.py", line 411, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
File "/usr/lib/python3.8/subprocess.py", line 489, in run
with Popen(*popenargs, **kwargs) as process:
File "/usr/lib/python3.8/subprocess.py", line 854, in init
self._execute_child(args, executable, preexec_fn, close_fds,
File "/usr/lib/python3.8/subprocess.py", line 1702, in _execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: 'cmake'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-vgv9vwph/lief/setup.py", line 363, in <module>
setup(
File "/home/kali/.local/lib/python3.8/site-packages/setuptools/__init__.py", line 153, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python3.8/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/lib/python3.8/distutils/dist.py", line 966, in run_commands
self.run_command(cmd)
File "/usr/lib/python3.8/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/home/kali/.local/lib/python3.8/site-packages/setuptools/command/install.py", line 61, in run
return orig.install.run(self)
File "/usr/lib/python3.8/distutils/command/install.py", line 589, in run
self.run_command('build')
File "/usr/lib/python3.8/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.8/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/usr/lib/python3.8/distutils/command/build.py", line 135, in run
self.run_command(cmd_name)
File "/usr/lib/python3.8/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.8/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/tmp/pip-install-vgv9vwph/lief/setup.py", line 74, in run
raise RuntimeError("CMake must be installed to build the following extensions: " +
RuntimeError: CMake must be installed to build the following extensions: lief
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-vgv9vwph/lief/setup.py'"'"'; file='"'"'/tmp/pip-install-vgv9vwph/lief/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-hb45g1s1/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/kali/.local/include/python3.8/lief Check the logs for full command output.
You need to install CMake and it has to be in a path accessible by python.
If you are using homebrew,
brew install cmake
Noticed you were using kali
apt install cmake

Install GDAL on Python 2.7 on a Amazon Linux virtual server

I have a t2.micro Amazon Linux instance running.
Python 2.7.12 is pre-installed already. I would like to install GDAL with the Python.
I have got gcc c++ and numpy installed.
None of the following commands worked for me:
sudo yum install gdal-devel
sudo yum install gdal
sudo yum install python-gdal
They all resulted in a following message saying.
No package {PACKAGE_NAME} available.
Error: Nothing to do
I cannot run apt-get on a Amazon Linux instance.
Also none of the relevant SO posts worked for me either.
I also ran
sudo easy_install GDAL
and this gave a MemoryError as below:
Searching for GDAL
Reading https://pypi.python.org/simple/GDAL/
Best match: GDAL 2.2.1
Downloading https://pypi.python.org/packages/f2/c3/1cadfcae9a4330c3a68c41e3bc96a5d228883eec6ea3e2fc6321165b863c/GDAL-2.2.1.tar.gz#md5=4d78446b1053825a2d15b70730288b0f
Processing GDAL-2.2.1.tar.gz
Writing /tmp/easy_install-1VNr7G/GDAL-2.2.1/setup.cfg
Running GDAL-2.2.1/setup.py -q bdist_egg --dist-dir /tmp/easy_install-1VNr7G/GDAL-2.2.1/egg-dist-tmp-q1jQCi
Traceback (most recent call last):
File "/usr/bin/easy_install", line 9, in <module>
load_entry_point('setuptools==12.2', 'console_scripts', 'easy_install-2.7')()
File "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line 2297, in main
distclass=DistributionWithoutHelpCommands, **kw
File "/usr/lib64/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/usr/lib64/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/usr/lib64/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line 393, in run
self.easy_install(spec, not self.no_deps)
File "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line 642, in easy_install
return self.install_item(spec, dist.location, tmpdir, deps)
File "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line 672, in install_item
dists = self.install_eggs(spec, download, tmpdir)
File "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line 857, in install_eggs
return self.build_and_install(setup_script, setup_base)
File "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line 1085, in build_and_install
self.run_setup(setup_script, setup_base, args)
File "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line 1071, in run_setup
run_setup(setup_script, args)
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 240, in run_setup
raise
File "/usr/lib64/python2.7/contextlib.py", line 35, in __exit__
self.gen.throw(type, value, traceback)
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 193, in setup_context
yield
File "/usr/lib64/python2.7/contextlib.py", line 35, in __exit__
self.gen.throw(type, value, traceback)
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 152, in save_modules
yield saved
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 126, in __exit__
self._saved = UnpickleableException.dump(type, exc)
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 110, in dump
return cls.dump(cls, cls(repr(exc)))
MemoryError
Its in the EPEL respository. Try this:
sudo yum-config-manager --enable epel
sudo yum install gdal-python
sudo yum -y update
sudo yum -y install make automake gcc gcc-c++ libcurl-devel proj-devel geos-devel
cd /tmp
curl -L http://download.osgeo.org/gdal/2.0.0/gdal-2.0.0.tar.gz | tar zxf -
cd gdal-2.0.0/
./configure --prefix=/usr/local --with-python
make -j4
sudo make install
sudo easy_install GDAL
export LD_LIBRARY_PATH="/usr/local/lib:$LD_LIBRARY_PATH"
sudo ldconfig
I was able to get this to work on a fresh t2.micro running amazon linux.
The final export needs to be made permanent in bash script or the relevant place depending on your needs.
Following this I was able to from osgeo import gdal
You can make clean in the /tmp/gdal-2.0.0 folder to free up some space when done.
Warn - Build took a long time on a t2.micro
I followed this link on my EC2 instance (m4.large) which has Amazon Linux and python 2.7. It worked perfectly for me (I changed Gdal 2.0.0 to 2.2.0). Just make sure you have all the dependencies (ie numpy and libgdal). Let me know if you have any questions!
Nix package manager worked for me:
curl https://nixos.org/nix/install | sh
. /home/ec2-user/.nix-profile/etc/profile.d/nix.sh
nix-env -i gdal

sudo -H -u git gitosis-init < ~/id_rsa.pub | error: no such file or directory

I got this shell script from a blog about how to equip git with gitosis.
But i got a "No such file or directory" error after running the script.
[git#209285 ~]$ sudo -H -u git gitosis-init < ~/id_rsa.pub
Traceback (most recent call last):
File "/usr/local/bin/gitosis-init", line 9, in <module>
load_entry_point('gitosis==0.2', 'console_scripts', 'gitosis-init')()
File "/usr/local/lib/python2.7/site-packages/gitosis-0.2-py2.7.egg/gitosis/app.py", line 24, in run
return app.main()
File "/usr/local/lib/python2.7/site-packages/gitosis-0.2-py2.7.egg/gitosis/app.py", line 38, in main
self.handle_args(parser, cfg, options, args)
File "/usr/local/lib/python2.7/site-packages/gitosis-0.2-py2.7.egg/gitosis/init.py", line 138, in handle_args
user=user,
File "/usr/local/lib/python2.7/site-packages/gitosis-0.2-py2.7.egg/gitosis/init.py", line 75, in init_admin_repository
template=resource_filename('gitosis.templates', 'admin')
File "/usr/local/lib/python2.7/site-packages/gitosis-0.2-py2.7.egg/gitosis/repository.py", line 63, in init
close_fds=True,
File "/usr/local/lib/python2.7/subprocess.py", line 522, in call
return Popen(*popenargs, **kwargs).wait()
File "/usr/local/lib/python2.7/subprocess.py", line 710, in __init__
errread, errwrite)
File "/usr/local/lib/python2.7/subprocess.py", line 1335, in _execute_child
raise child_exception
OSError: [Errno 2] No such file or directory
I am puzzled,as the man manual says that:
-H The -H (HOME) option sets the HOME environment variable to the homedir of the target user (root by default) as specified in passwd(5). By default, sudo
does not modify HOME (see set_home and always_set_home in sudoers(5)).
,which is cited from linux manual.
The -H option just sets the HOME environment variable to the homedir of the target user as specified in passwd.
However i specified "/home/git" as homedir for git user in my /etc/passwd file.
apache:x:48:48:Apache:/var/www:/sbin/nologin
git:x:100:101:git version control:/home/git:/bin/bash
duanduan:x:101:500::/home/duanduan:/bin/bash
But why i still got this message? or was incorrect my comprehension of the description in manual?
Append for comments:
And it seems like before with specifying a absolute path.Maybe, it's not the cause.
sudo -H -u git gitosis-init < /home/git/id_rsa.pub
Traceback (most recent call last):
File "/usr/local/bin/gitosis-init", line 9, in <module>
load_entry_point('gitosis==0.2', 'console_scripts', 'gitosis-init')()
File "/usr/local/lib/python2.7/site-packages/gitosis-0.2-py2.7.egg/gitosis/app.py", line 24, in run
return app.main()
File "/usr/local/lib/python2.7/site-packages/gitosis-0.2-py2.7.egg/gitosis/app.py", line 38, in main
self.handle_args(parser, cfg, options, args)
File "/usr/local/lib/python2.7/site-packages/gitosis-0.2-py2.7.egg/gitosis/init.py", line 138, in handle_args
user=user,
File "/usr/local/lib/python2.7/site-packages/gitosis-0.2-py2.7.egg/gitosis/init.py", line 75, in init_admin_repository
template=resource_filename('gitosis.templates', 'admin')
File "/usr/local/lib/python2.7/site-packages/gitosis-0.2-py2.7.egg/gitosis/repository.py", line 63, in init
close_fds=True,
File "/usr/local/lib/python2.7/subprocess.py", line 522, in call
return Popen(*popenargs, **kwargs).wait()
File "/usr/local/lib/python2.7/subprocess.py", line 710, in __init__
errread, errwrite)
File "/usr/local/lib/python2.7/subprocess.py", line 1335, in _execute_child
raise child_exception
OSError: [Errno 2] No such file or directory
I guess it is because ~ is expanded by bash before transferring to sudo as a argument, why not try to specify a absolute path for you public key file?

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