Executing a command via SSH during a while loop - linux

I have a list of servers in a file I'll call "boxes."
I'm running the following:
bastion:~ # while read i j; do ssh -n $i 'echo $(hostname)'; done < boxes
When I run this, I should be getting the host name of every box I'm supposedly SSHing into right? But what I'm getting is my hostname "bastion" over and over as if the command is not SSHing to any box.
Any idea why that might be or what I'm doing wrong here?
Thanks.
EDIT: I couldn't get SSH to work for this task. In the end I swapped the ssh for ansible -m shell.

hostname is enough
my favorite solution with GNU Parallel (much faster) sudo apt-get install parallel
parallel --nonall --slf boxes hostname
you can add --tag and much more https://www.gnu.org/software/parallel/parallel_tutorial.html

Related

Running bash script over SSH [duplicate]

I have to run a local shell script (windows/Linux) on a remote machine.
I have SSH configured on both machine A and B. My script is on machine A which will run some of my code on a remote machine, machine B.
The local and remote computers can be either Windows or Unix based system.
Is there a way to run do this using plink/ssh?
If Machine A is a Windows box, you can use Plink (part of PuTTY) with the -m parameter, and it will execute the local script on the remote server.
plink root#MachineB -m local_script.sh
If Machine A is a Unix-based system, you can use:
ssh root#MachineB 'bash -s' < local_script.sh
You shouldn't have to copy the script to the remote server to run it.
This is an old question, and Jason's answer works fine, but I would like to add this:
ssh user#host <<'ENDSSH'
#commands to run on remote host
ENDSSH
This can also be used with su and commands which require user input. (note the ' escaped heredoc)
Since this answer keeps getting bits of traffic, I would add even more info to this wonderful use of heredoc:
You can nest commands with this syntax, and that's the only way nesting seems to work (in a sane way)
ssh user#host <<'ENDSSH'
#commands to run on remote host
ssh user#host2 <<'END2'
# Another bunch of commands on another host
wall <<'ENDWALL'
Error: Out of cheese
ENDWALL
ftp ftp.example.com <<'ENDFTP'
test
test
ls
ENDFTP
END2
ENDSSH
You can actually have a conversation with some services like telnet, ftp, etc. But remember that heredoc just sends the stdin as text, it doesn't wait for response between lines
I just found out that you can indent the insides with tabs if you use <<-END!
ssh user#host <<-'ENDSSH'
#commands to run on remote host
ssh user#host2 <<-'END2'
# Another bunch of commands on another host
wall <<-'ENDWALL'
Error: Out of cheese
ENDWALL
ftp ftp.example.com <<-'ENDFTP'
test
test
ls
ENDFTP
END2
ENDSSH
(I think this should work)
Also see
http://tldp.org/LDP/abs/html/here-docs.html
Also, don't forget to escape variables if you want to pick them up from the destination host.
This has caught me out in the past.
For example:
user#host> ssh user2#host2 "echo \$HOME"
prints out /home/user2
while
user#host> ssh user2#host2 "echo $HOME"
prints out /home/user
Another example:
user#host> ssh user2#host2 "echo hello world | awk '{print \$1}'"
prints out "hello" correctly.
This is an extension to YarekT's answer to combine inline remote commands with passing ENV variables from the local machine to the remote host so you can parameterize your scripts on the remote side:
ssh user#host ARG1=$ARG1 ARG2=$ARG2 'bash -s' <<'ENDSSH'
# commands to run on remote host
echo $ARG1 $ARG2
ENDSSH
I found this exceptionally helpful by keeping it all in one script so it's very readable and maintainable.
Why this works. ssh supports the following syntax:
ssh user#host remote_command
In bash we can specify environment variables to define prior to running a command on a single line like so:
ENV_VAR_1='value1' ENV_VAR_2='value2' bash -c 'echo $ENV_VAR_1 $ENV_VAR_2'
That makes it easy to define variables prior to running a command. In this case echo is our command we're running. Everything before echo defines environment variables.
So we combine those two features and YarekT's answer to get:
ssh user#host ARG1=$ARG1 ARG2=$ARG2 'bash -s' <<'ENDSSH'...
In this case we are setting ARG1 and ARG2 to local values. Sending everything after user#host as the remote_command. When the remote machine executes the command ARG1 and ARG2 are set the local values, thanks to local command line evaluation, which defines environment variables on the remote server, then executes the bash -s command using those variables. Voila.
<hostA_shell_prompt>$ ssh user#hostB "ls -la"
That will prompt you for password, unless you have copied your hostA user's public key to the authorized_keys file on the home of user .ssh's directory. That will allow for passwordless authentication (if accepted as an auth method on the ssh server's configuration)
I've started using Fabric for more sophisticated operations. Fabric requires Python and a couple of other dependencies, but only on the client machine. The server need only be a ssh server. I find this tool to be much more powerful than shell scripts handed off to SSH, and well worth the trouble of getting set up (particularly if you enjoy programming in Python). Fabric handles running scripts on multiple hosts (or hosts of certain roles), helps facilitate idempotent operations (such as adding a line to a config script, but not if it's already there), and allows construction of more complex logic (such as the Python language can provide).
cat ./script.sh | ssh <user>#<host>
chmod +x script.sh
ssh -i key-file root#111.222.3.444 < ./script.sh
Try running ssh user#remote sh ./script.unx.
Assuming you mean you want to do this automatically from a "local" machine, without manually logging into the "remote" machine, you should look into a TCL extension known as Expect, it is designed precisely for this sort of situation. I've also provided a link to a script for logging-in/interacting via SSH.
https://www.nist.gov/services-resources/software/expect
http://bash.cyberciti.biz/security/expect-ssh-login-script/
ssh user#hostname ". ~/.bashrc;/cd path-to-file/;. filename.sh"
highly recommended to source the environment file(.bashrc/.bashprofile/.profile). before running something in remote host because target and source hosts environment variables may be deffer.
I use this one to run a shell script on a remote machine (tested on /bin/bash):
ssh deploy#host . /home/deploy/path/to/script.sh
if you wanna execute command like this
temp=`ls -a`
echo $temp
command in `` will cause errors.
below command will solve this problem
ssh user#host '''
temp=`ls -a`
echo $temp
'''
If the script is short and is meant to be embedded inside your script and you are running under bash shell and also bash shell is available on the remote side, you may use declare to transfer local context to remote. Define variables and functions containing the state that will be transferred to the remote. Define a function that will be executed on the remote side. Then inside a here document read by bash -s you can use declare -p to transfer the variable values and use declare -f to transfer function definitions to the remote.
Because declare takes care of the quoting and will be parsed by the remote bash, the variables are properly quoted and functions are properly transferred. You may just write the script locally, usually I do one long function with the work I need to do on the remote side. The context has to be hand-picked, but the following method is "good enough" for any short scripts and is safe - should properly handle all corner cases.
somevar="spaces or other special characters"
somevar2="!##$%^"
another_func() {
mkdir -p "$1"
}
work() {
another_func "$somevar"
touch "$somevar"/"$somevar2"
}
ssh user#server 'bash -s' <<EOT
$(declare -p somevar somevar2) # transfer variables values
$(declare -f work another_func) # transfer function definitions
work # call the function
EOT
The answer here (https://stackoverflow.com/a/2732991/4752883) works great if
you're trying to run a script on a remote linux machine using plink or ssh.
It will work if the script has multiple lines on linux.
**However, if you are trying to run a batch script located on a local
linux/windows machine and your remote machine is Windows, and it consists
of multiple lines using **
plink root#MachineB -m local_script.bat
wont work.
Only the first line of the script will be executed. This is probably a
limitation of plink.
Solution 1:
To run a multiline batch script (especially if it's relatively simple,
consisting of a few lines):
If your original batch script is as follows
cd C:\Users\ipython_user\Desktop
python filename.py
you can combine the lines together using the "&&" separator as follows in your
local_script.bat file:
https://stackoverflow.com/a/8055390/4752883:
cd C:\Users\ipython_user\Desktop && python filename.py
After this change, you can then run the script as pointed out here by
#JasonR.Coombs: https://stackoverflow.com/a/2732991/4752883 with:
`plink root#MachineB -m local_script.bat`
Solution 2:
If your batch script is relatively complicated, it may be better to use a batch
script which encapsulates the plink command as well as follows as pointed out
here by #Martin https://stackoverflow.com/a/32196999/4752883:
rem Open tunnel in the background
start plink.exe -ssh [username]#[hostname] -L 3307:127.0.0.1:3306 -i "[SSH
key]" -N
rem Wait a second to let Plink establish the tunnel
timeout /t 1
rem Run the task using the tunnel
"C:\Program Files\R\R-3.2.1\bin\x64\R.exe" CMD BATCH qidash.R
rem Kill the tunnel
taskkill /im plink.exe
This bash script does ssh into a target remote machine, and run some command in the remote machine, do not forget to install expect before running it (on mac brew install expect )
#!/usr/bin/expect
set username "enterusenamehere"
set password "enterpasswordhere"
set hosts "enteripaddressofhosthere"
spawn ssh $username#$hosts
expect "$username#$hosts's password:"
send -- "$password\n"
expect "$"
send -- "somecommand on target remote machine here\n"
sleep 5
expect "$"
send -- "exit\n"
You can use runoverssh:
sudo apt install runoverssh
runoverssh -s localscript.sh user host1 host2 host3...
-s runs a local script remotely
Useful flags:
-g use a global password for all hosts (single password prompt)
-n use SSH instead of sshpass, useful for public-key authentication
If it's one script it's fine with the above solution.
I would set up Ansible to do the Job. It works in the same way (Ansible uses ssh to execute the scripts on the remote machine for both Unix or Windows).
It will be more structured and maintainable.
It is unclear if the local script uses locally set variables, functions, or aliases.
If it does this should work:
myscript.sh:
#!/bin/bash
myalias $myvar
myfunction $myvar
It uses $myvar, myfunction, and myalias. Let us assume they is set locally and not on the remote machine.
Make a bash function that contains the script:
eval "myfun() { `cat myscript.sh`; }"
Set variable, function, and alias:
myvar=works
alias myalias='echo This alias'
myfunction() { echo This function "$#"; }
And "export" myfun, myfunction, myvar, and myalias to server using env_parallel from GNU Parallel:
env_parallel -S server -N0 --nonall myfun ::: dummy
Extending answer from #cglotr. In order to write inline command use printf, it useful for simple command and it support multiline using char escaping '\n'
example :
printf "cd /to/path/your/remote/machine/log \n tail -n 100 Server.log" | ssh <user>#<host> 'bash -s'
See don't forget to add bash -s
There is another approach ,you can copy your script in your host with scp command then execute it easily .
First, copy the script over to Machine B using scp
[user#machineA]$ scp /path/to/script user#machineB:/home/user/path
Then, just run the script
[user#machineA]$ ssh user#machineB "/home/user/path/script"
This will work if you have given executable permission to the script.

calling SSH Sudo Commands in a bash script

I am trying to run the command while looping through
a series of sever addresses.
while read server
do
ssh -t $sever "sudo md5sum $fileName >> hashes"
done < serverNamesFile
within a script in bash but i keep getting this error
sudo: sorry, you must have a tty to run sudo
if I run the same line of commands in the command line though, it works perfectly fine.
Can someone tell me why this keeps happening?
you probably have
Defaults requiretty
in your /etc/sudoers file.
As the option's name suggests, that will cause sudo to require a tty
I solved my problem. apparently looping through a series of servers inside a script causes the "TTY" error for SSH.
a better practice is to create a script that takes in the address of the server you want to SSH in and then pass in the commands that way. you can still loop through a series of file or commands by calling SSH each time and use this command:
while read stuff
do
ssh -qtt $severName " command"
done < $fileStuff

LDAP - SSH script across multiple VM's

So I'm ssh'ing into a router that has several VM's. It is setup using LDAP so that each VM has the same files, settings, etc. However they have different cores allocated, different libraries and packages installed. Instead of logging into each VM individually and running the command, I want to automate it by putting the script in .bashrc.
So what I have so far:
export LD_LIBRARY_PATH=/lhome/username
# .so files are in ~/ to avoid permission denied problems
output=$(cat /proc/cpuinfo | grep "^cpu cores" | uniq | tail -c 2)
current=server_name
if [[ `hostname-s` != $current ]]; then
ssh $current
fi
/path/to/program --hostname $(echo $(hostname -s)) --threads $((output*2))
Each VM, upon logging in, will execute this script, so I have to check if the current VM has the hostname to avoid an SSH loop. The idea is to run the program, then exit back out to the origin to resume the script. The problem is of course that the process will die upon logging out.
It's been suggested to me to use TMUX on an array of the hostnames, but I would have no idea on how to approach this.
You could install clusterSSH, set up a list of hostnames, and execute things from the terminal windows opened. You may use screen/tmux/nohup to allow processes started to keep running, even after logout.
Yet, if you still want to play around with scripting, you may install tmux, and use:
while read host; do
scp "script_to_run_remotely" ${host}:~/
ssh ${host} tmux new-session -d '~/script_to_run_remotely'\; detach
done < hostlist
Note: hostlist should be a list of hostnames, one per line.

write a shell script to ssh to a remote machine and execute commands

I have two questions:
There are multiple remote linux machines, and I need to write a shell script which will execute the same set of commands in each machine. (Including some sudo operations). How can this be done using shell scripting?
When ssh'ing to the remote machine, how to handle when it prompts for RSA fingerprint authentication.
The remote machines are VMs created on the run and I just have their IPs. So, I cant place a script file beforehand in those machines and execute them from my machine.
There are multiple remote linux machines, and I need to write a shell script which will execute the same set of commands in each machine. (Including some sudo operations). How can this be done using shell scripting?
You can do this with ssh, for example:
#!/bin/bash
USERNAME=someUser
HOSTS="host1 host2 host3"
SCRIPT="pwd; ls"
for HOSTNAME in ${HOSTS} ; do
ssh -l ${USERNAME} ${HOSTNAME} "${SCRIPT}"
done
When ssh'ing to the remote machine, how to handle when it prompts for RSA fingerprint authentication.
You can add the StrictHostKeyChecking=no option to ssh:
ssh -o StrictHostKeyChecking=no -l username hostname "pwd; ls"
This will disable the host key check and automatically add the host key to the list of known hosts. If you do not want to have the host added to the known hosts file, add the option -o UserKnownHostsFile=/dev/null.
Note that this disables certain security checks, for example protection against man-in-the-middle attack. It should therefore not be applied in a security sensitive environment.
Install sshpass using, apt-get install sshpass then edit the script and put your linux machines IPs, usernames and password in respective order. After that run that script. Thats it ! This script will install VLC in all systems.
#!/bin/bash
SCRIPT="cd Desktop; pwd; echo -e 'PASSWORD' | sudo -S apt-get install vlc"
HOSTS=("192.168.1.121" "192.168.1.122" "192.168.1.123")
USERNAMES=("username1" "username2" "username3")
PASSWORDS=("password1" "password2" "password3")
for i in ${!HOSTS[*]} ; do
echo ${HOSTS[i]}
SCR=${SCRIPT/PASSWORD/${PASSWORDS[i]}}
sshpass -p ${PASSWORDS[i]} ssh -l ${USERNAMES[i]} ${HOSTS[i]} "${SCR}"
done
This work for me.
Syntax : ssh -i pemfile.pem user_name#ip_address 'command_1 ; command 2; command 3'
#! /bin/bash
echo "########### connecting to server and run commands in sequence ###########"
ssh -i ~/.ssh/ec2_instance.pem ubuntu#ip_address 'touch a.txt; touch b.txt; sudo systemctl status tomcat.service'
There are a number of ways to handle this.
My favorite way is to install http://pamsshagentauth.sourceforge.net/ on the remote systems and also your own public key. (Figure out a way to get these installed on the VM, somehow you got an entire Unix system installed, what's a couple more files?)
With your ssh agent forwarded, you can now log in to every system without a password.
And even better, that pam module will authenticate for sudo with your ssh key pair so you can run with root (or any other user's) rights as needed.
You don't need to worry about the host key interaction. If the input is not a terminal then ssh will just limit your ability to forward agents and authenticate with passwords.
You should also look into packages like Capistrano. Definitely look around that site; it has an introduction to remote scripting.
Individual script lines might look something like this:
ssh remote-system-name command arguments ... # so, for exmaple,
ssh target.mycorp.net sudo puppet apply
The accepted answer sshes to machines sequentially. In case you want to ssh to multiple machines and run some long-running commands like scp concurrently on them, run the ssh command as a background process.
#!/bin/bash
username="user"
servers=("srv-001" "srv-002" "srv-002" "srv-003");
script="pwd;"
for s in "${servers[#]}"; do
echo "sshing ${username}#${s} to run ${script}"
(ssh ${username}#${s} ${script})& # Run in background
done
wait # If removed, you can run some other script here
If you are able to write Perl code, then you should consider using Net::OpenSSH::Parallel.
You would be able to describe the actions that have to be run in every host in a declarative manner and the module will take care of all the scary details. Running commands through sudo is also supported.
For this kind of tasks, I repeatedly use Ansible which allows to duplicate coherently bash scripts in several containets or VM. Ansible (more precisely Red Hat) now has an additional web interface AWX which is the open-source edition of their commercial Tower.
Ansible: https://www.ansible.com/
AWX:https://github.com/ansible/awx
Ansible Tower: commercial product, you will probably fist explore the free open-source AWX, rather than the 15days free-trail of Tower
There is are multiple ways to execute the commands or script in the multiple remote Linux machines.
One simple & easiest way is via pssh (parallel ssh program)
pssh: is a program for executing ssh in parallel on a number of hosts. It provides features such as sending input to all of the processes, passing a password to ssh, saving the output to files, and timing out.
Example & Usage:
Connect to host1 and host2, and print "hello, world" from each:
pssh -i -H "host1 host2" echo "hello, world"
Run commands via a script on multiple servers:
pssh -h hosts.txt -P -I<./commands.sh
Usage & run a command without checking or saving host keys:
pssh -h hostname_ip.txt -x '-q -o StrictHostKeyChecking=no -o PreferredAuthentications=publickey -o PubkeyAuthentication=yes' -i 'uptime; hostname -f'
If the file hosts.txt has a large number of entries, say 100, then the parallelism option may also be set to 100 to ensure that the commands are run concurrently:
pssh -i -h hosts.txt -p 100 -t 0 sleep 10000
Options:
-I: Read input and sends to each ssh process.
-P: Tells pssh to display output as it arrives.
-h: Reads the host's file.
-H : [user#]host[:port] for single-host.
-i: Display standard output and standard error as each host completes
-x args: Passes extra SSH command-line arguments
-o option: Can be used to give options in the format used in the configuration file.(/etc/ssh/ssh_config) (~/.ssh/config)
-p parallelism: Use the given number as the maximum number of concurrent connections
-q Quiet mode: Causes most warning and diagnostic messages to be suppressed.
-t: Make connections time out after the given number of seconds. 0 means pssh will not timeout any connections
When ssh'ing to the remote machine, how to handle when it prompts for
RSA fingerprint authentication.
Disable the StrictHostKeyChecking to handle the RSA authentication prompt.
-o StrictHostKeyChecking=no
Source: man pssh
This worked for me. I made a function. Put this in your shell script:
sshcmd(){
ssh $1#$2 $3
}
sshcmd USER HOST COMMAND
If you have multiple machines that you want to do the same command on you would repeat that line with a semi colon. For example, if you have two machines you would do this:
sshcmd USER HOST COMMAND ; sshcmd USER HOST COMMAND
Replace USER with the user of the computer. Replace HOST with the name of the computer. Replace COMMAND with the command you want to do on the computer.
Hope this helps!
You can follow this approach :
Connect to remote machine using Expect Script. If your machine doesn't support expect you can download the same. Writing Expect script is very easy (google to get help on this)
Put all the action which needs to be performed on remote server in a shell script.
Invoke remote shell script from expect script once login is successful.

using a variable in a BASH command?

I have 20 machines, each running a process. The machines are named:
["machine1", "machine2", ...., "machine20"]
To inspect how the process is doing on machine1, I issue the following command from a remote machine:
ssh machine1 cat log.txt
For machine2, I issue the following command:
ssh machine2 cat log.txt
Similarly, for machine20, I issue the following command:
ssh machine20 cat log.txt
Is there a bash command that will allow me to view the output from all machines using one command?
If the machines are nicely numbered like in your example:
for i in {1..20} ; do ssh machine$i cat log.txt; done
If you have the list of machines in a file, you can use:
cat machinesList.txt | xargs -i ssh {} cat log.txt
You could store all your machine names in an array or text file, and loop through it.
declare -a machineList=('host1' 'host2' 'otherHost') # and more...
for machine in ${machineList[#]}
do
ssh $machine cat log.txt
done
I assume your machines aren't literally named 'machine1', 'machine2', etc.
Some links:
bash Array Tutorial
GNU Bash Array Documentation
for i in {1..20}
do
ssh machine$i cat log.txt
done
Use a loop?
for i in {1..20}
do
ssh machine$i cat log.txt
done
But note that you're running cat within a remote shell session, not the current one, so this might not quite work as you expect. Try it and see.
Put your hosts in a file and use a while loop as shown below. Note the use of the -n flag on ssh:
while read host; do ssh -n $host cat log.txt; done < hosts-file
Alternatively you can use PSSH:
pssh -h hosts-file -i "cat log.txt"
I would recommend using a program called Shmux. Despite the name, it works really well. I've used it with more than 100 machines with good results. It also gracefully handles machine failures for you which could be a disadvantage with a bash for loop approach.
I think the coolest thing about this program is the ability to issue multiple threads for your commands which allows to run the commands on all 20 machines in parallel.
Aside from the suggestions for using a loop, you might want to take a look at tools, like pssh or dsh, designed for running commands on multiple clients.

Resources