Minimum number of subsequences required to interleave one string to another - string

I saw the original question Minimum of subsequences required to convert one string to another, and it's very similar to this quesion 1055. Shortest Way to Form String on LeetCode.
Description:
Given two strings source and target, return the minimum number of subsequences of source such that their concatenation equals target. If the task is impossible, return -1.
Example 1:
Input: source = "abc", target = "abcbc"
Output: 2
Explanation: The target "abcbc" can be formed by "abc" and "bc", which are subsequences of source "abc".
Supposed s' is a subsequence of source, so this problem is to find s'_1s'_2...s'_k to form target. My question is how to find the minimum number of subsequences required to interleave one string to another.
eg:
Input: source = "adbsc", target = "addsbc"
Output: 2
Explanation:
step1: s'1 = adbc, then target' = ds
step2: s'2 = ds, then target' = ""
I don't know whether it can slove this problem by removing the longest common subsequence of source and target' to form t', and repeat it untill t' = "".
Here is my code:
class Solution:
def shortestWay(self, s: str, t: str) -> int:
def lcs(s: str, t: str) -> str:
m, n = len(s), len(t)
dp = [[0] * (n + 1) for _ in range(m + 1)]
for i in range(1, m + 1):
for j in range(1, n + 1):
if s[i-1] == t[j-1]:
dp[i][j] = dp[i-1][j-1] + 1
else:
dp[i][j] = max(dp[i-1][j], dp[i][j-1])
choose = [False] * n
i, j = m, n
while i + j != 0:
if s[i-1] == t[j-1]:
choose[j-1] = True
i, j = i - 1, j - 1
elif dp[i][j] == dp[i-1][j]:
i -= 1
elif dp[i][j] == dp[i][j-1]:
j -= 1
print(f'lcs({s}, {t}) is', ''.join(t[i] for i, v in enumerate(choose) if v))
return ''.join(t[i] for i, v in enumerate(choose) if not v)
ans = 0
while t:
ans += 1
t1 = lcs(s, t)
print(repr(t1))
if t1 == t:
return -1
t = t1
return ans
"""
lcs(adbsc, addsbc) is adbc
'ds'
lcs(adbsc, ds) is ds
''
"""
Is anybody can help me to proof/solve this problem, thanks!

Your working for your second example (source = "abc", target = "abcbc") doesn't make sense to me. Your algorithm idea (repeatedly removing the LCS from target) produces an optimal solution -- you just need to prove that no other solution can be better.
Proof sketch
Consider an optimal solution, containing OPT segments. If it equals your algorithm's solution then we're done; otherwise, it must consist of some number of common subsequence segments, the first k (possibly k=0) of which match the segments produced by your algorithm, followed by a (k+1)-th segment that is strictly shorter than your algorithm's (k+1)-th segment (since your algorithm always chooses the longest possible segment to add at each stage), followed by some number (possibly zero) of remaining segments.
Notice that if some subsequence of a string S is equal to a string T, then for any given suffix of T, we can certainly find a subsequence of S equal to it -- all we need to do is drop some of the initial characters from the subsequence.
So, getting back to our original problem: Some initial part of the remaining segments (possibly involving multiple segments) can be trimmed off to produce a list of segments that, when appended to the first k+1 segments produced by your algorithm, gives a solution that:
agrees with the first k+1 segments of your algorithm's solution, and
has segment count no worse than OPT.
The optimal solution we started with agreed with your algorithm's solution on the first k segments; this new optimal solution agrees on at least one more segment. If the new solution is not yet completely equal to your algorithm's solution, then the analysis can be repeated, producing a new solution that agrees with it on at least the first k+2 segments. This can be repeated until we ultimately produce a solution that agrees completely with your algorithm's solution and has length OPT. Since we made no assumptions about the input instance, this proves your algorithm produces an optimal solution on every input instance.

Related

Find the maximum value of K such that sub-sequences A and B exist and should satisfy the mentioned conditions

Given a string S of length n. Choose an integer K and two non-empty sub-sequences A and B of length K such that it satisfies the following conditions:
A = B i.e. for each i the ith character in A is same as the ith character in B.
Let's denote the indices used to construct A as a1,a2,a3,...,an where ai belongs to S and B as b1,b2,b3,...,bn where bi belongs to S. If we denote the number of common indices in A and B by M then M + 1 <= K.
Find the maximum value of K such that it is possible to find the sub-sequences A and B which satisfies the above conditions.
Constraints:
0 < N <= 10^5
Things which I observed are:
The value of K = 0 if the number of characters in the given string are all distinct i.e S = abcd.
K = length of S - 1 if all the characters in the string are same i.e. S = aaaa.
The value of M cannot be equal to K because then M + 1 <= K will not be true i.e you cannot have a sub-sequence A and B that satifies A = B and a1 = b1, a2 = b2, a3 = b3, ..., an = bn.
If the string S is palindrome then K = (Total number of times a character is repeated in the string if the repeatation count > 1) - 1. i.e. S = tenet then t is repeated 2 times, e is repeated 2 times, Total number of times a character is repeated = 4, K = 4 - 1 = 3.
I am having trouble designing the algorithm to solve the above problem.
Let me know in the comments if you need more clarification.
(Update: see O(n) answer.)
We can modify the classic longest common subsequence recurrence to take an extra parameter.
JavaScript code (not memoised) that I hope is self explanatory:
function f(s, i, j, haveUncommon){
if (i < 0 || j < 0)
return haveUncommon ? 0 : -Infinity
if (s[i] == s[j]){
if (haveUncommon){
return 1 + f(s, i-1, j-1, true)
} else if (i == j){
return Math.max(
1 + f(s, i-1, j-1, false),
f(s, i-1, j, false),
f(s, i, j-1, false)
)
} else {
return 1 + f(s, i-1, j-1, true)
}
}
return Math.max(
f(s, i-1, j, haveUncommon),
f(s, i, j-1, haveUncommon)
)
}
var s = "aabcde"
console.log(f(s, s.length-1, s.length-1, false))
I believe we are just looking for the closest equal pair of characters since the only characters excluded from A and B would be one of the characters in the pair and any characters in between.
Here's O(n) in JavaScript:
function f(s){
let map = {}
let best = -1
for (let i=0; i<s.length; i++){
if (!map.hasOwnProperty(s[i])){
map[s[i]] = i
continue
}
best = Math.max(best, s.length - i + map[s[i]])
map[s[i]] = i
}
return best
}
var strs = [
"aabcde", // 5
"aaababcd", // 7
"aebgaseb", // 4
"aefttfea",
// aeft fea
"abcddbca",
// abcd bca,
"a" // -1
]
for (let s of strs)
console.log(`${ s }: ${ f(s) }`)
O(n) solution in Python3:
def compute_maximum_k(word):
last_occurences = {}
max_k = -1
for i in range(len(word)):
if(not last_occurences or not word[i] in last_occurences):
last_occurences[word[i]] = i
continue
max_k = max(max_k,(len(word) - i) + last_occurences[word[i]])
last_occurences[word[i]] = i
return max_k
def main():
words = ["aabcde","aaababcd","aebgaseb","aefttfea","abcddbca","a","acbdaadbca"]
for word in words:
print(compute_maximum_k(word))
if __name__ == "__main__":
main()
A solution for the maximum length substring would be the following:
After building a Suffix Array you can derive the LCP Array. The maximum value in the LCP array corresponds to the K you are looking for. The overall complexity of both constructions is O(n).
A suffix array will sort all prefixes in you string S in ascending order. The longest common prefix array then computes the lengths of the longest common prefixes (LCPs) between all pairs of consecutive suffixes in the sorted suffix array. Thus the maximum value in this array corresponds to the length of the two maximum length substrings of S.
For a nice example using the word "banana", check out the LCP Array Wikipage
I deleted my previous answer as I don't think we need an LCS-like solution (LCS=longest Common Subsequence).
It is sufficient to find the couple of subsequences (A, B) that differ in one character and share all the others.
The code below finds the solution in O(N) time.
def function(word):
dp = [0]*len(word)
lastOccurences = {}
for i in range(len(dp)-1, -1, -1):
if i == len(dp)-1:
dp[i] = 0
else:
if dp[i+1] > 0:
dp[i] = 1 + dp[i+1]
elif word[i] in lastOccurences:
dp[i] = len(word)-lastOccurences[word[i]]
lastOccurences[word[i]] = i
return dp[0]
dp[i] is equal to 0 when all characters from i to the end of the string are different.
I will explain my code by an example.
For "abcack", there are two cases:
Either the first 'a' will be shared by the two subsequences A and B, in this case the solution will be = 1 + function("bcack")
Or 'a' will not be shared between A and B. In this case the result will be 1 + "ck". Why 1 + "ck" ? It's because we have already satisfied M+1<=K so just add all the remaining characters. In terms of indices, the substrings are [0, 4, 5] and [3, 4, 5].
We take the maximum between these two cases.
The reason I'm scanning right to left is to not have O(N) search for the current character in the rest of the string, I maintain the index of the last visited occurence of the character in the dict lastOccurences.

Convert S to T by performing K operations (HackerRank)

I was solving a problem on HackerRank. It required me to see if it is possible to convert string s to string t by performing k operations.
https://www.hackerrank.com/challenges/append-and-delete/problem
The operations we can perform are: appending a lowercase letter to the end of s or removing a lowercase letter from the end of s. For example Ash Ashley 2 would return No since we need 3 operations, not 2.
I tried solving the problem as follows:
def appendAndDelete(s, t, k):
if len(s) > len(t):
maxs = [s,t]
else:
maxs = [t,s]
maximum = maxs[0]
minimum = maxs[1]
k -= len(maximum) - len(minimum)
substr = maximum[len(minimum): len(maximum)]
maximum = maximum.replace(substr, '')
i = 0
while i < len(maximum):
if maximum[i] != minimum[i]:
k -= (len(maximum)-i)*2
break
i += 1
if k < 0:
return 'No'
else:
return 'Yes'
However, it fails at this weird test case. y yu 2. The expected answer is No but according to my code, it would return Yes since only one operation was required. Is there something I do not understand?
Since you don't explain your idea, it's difficult for us to understand
what you mean in your code and debug it to tell you where you went wrong.
However, I would like to share my idea(I solved this on the website too)-
len1 => Length of first string s.
len2 => Length of second/target string t.
Exactly K makes it a bit tricky. So, if len1 + len2 <= k, you can blindly assume it can be accomplished and return true since we can delete empty string many times to get an empty string(as it says) and we can delete characters of one string entirely and keep appending new letters to get the another.
When we start matching s with t from left to right, this looks more like longest common prefix but this is NOT the case. Let's take an example -
aaaaaaaaa (source)
aaaa (target)
7 (k)
Here, up till aaaa it's common and looks like there are additional 5 a's in the source. So, we can delete those 5 a's and get the target but 5 != 7, hence it appears to be a No. But this ain't the case since we can delete an a from the source just like that and append it again(2 operations) just to satisfy k. So, it need not be longest common prefix all the time, however it gets us closer to the solution.
So, let's match both strings from left to right and stop when there is a mismatch. Let's assume we got this index in a variable called first_unmatched. Initialize first_unmatched = min(len(s),len(t)) at the beginning of your method itself.
Let
rem1 = len1 - first_unmatched
rem2 = len2 - first_unmatched
where rem1 is remaining substring of s and rem2 is the remaining substring of t.
Now, comes the conditions.
if(rem1 + rem2 == k) return true-
This is because rem1 characters to delete and rem2 characters to add. If both sum up to k then it's possible.
if(rem1 + rem2 > k) return false-
This is because rem1 characters to delete and rem2 characters to add. If both sum greater than k then it's not possible.
if(rem1 + rem2 < k) return (k - (rem1 + rem2)) % 2 == 0-
This is because rem1 characters to delete and rem2 characters to add. If both sum less than k, then it depends.
Here, (k - (rem1 + rem2)) will give you the extra in k. This extra can or cannot depends upon whether it's divisible by 2 or not. Here, we do %2 because we have 2 operations in our question - delete and append. If the extra k falls short of any operation, then the answer is No, else it's a Yes.
You can cross check this with above example.

what is this shift used in the simplified galil seiferas string match algorithm?

I'm self-studying problem 32-1 in CLRS; part c), presents the following algorithm for string matching:
REPETITION-MATCHER(P, T)
m = P.length
n = T.length
k = 1 + ρ'(P)
q = 0
s = 0
while s <= n-m
if T[s+q+1] == P[q+1]
q = q+1
if q==m
print "Pattern occurs with shift" s
if q==m or T[s+q+1] != P[q+1]
s = s+max(1, ceil(q/k))
q = 0
Here, ρ'(P), which is a function of P only, is defined as the largest integer r such that some prefix P[1..i] = y^r, e.g. a substring y repeated r times.
This algorithm appears to be 95 percent similar to the naive brute-force string matcher. However, the one part which greatly confuses me, and which seems to be the centerpiece of the entire algorithm, is the second to last line. Here, q is the number of characters of P matched so far. What is the rationale behind ceil(q/k)? It is completely opaque to me. It would have made more sense if that line were something like s = s + max(1+q, 1+i), where i is the length of the prefix that gives rise to ρ'(P).
CLRS claims that this algorithm is due to Galil and Seiferas, but in the reference they provide, I cannot find anything that resembles the algorithm provided above. It appears that reference contains, if anything, a much more advanced version of what is here. Can someone explain this ceil(q/k) value, and/or point me toward a reference that describes this particular algorithm, instead of the more well-known main Galil Seiferas paper?
Example #1:
Match aaaa in aaaaab, here ρ' = 4. Consider state:
aaaa ab
^
We have a mismatch here, and we want to move forward by one symbol, no more, because we will match full pattern again (last line sets q to zero). q = 4 and k = 5, so ceil(q/k) = 1, that's all right.
Example #2: Match abcd.abcd.abcd.X in abcd.abcd.abcd.abcd.X. Consider state:
abcd.abcd.abcd. abcd.X
^
We have a mismatch here, and we would like to move forward by five symbols. q = 15 and k = 4, so ceil(q/k) = 4. That's ok, it is almost 5, we still can match our pattern. Had we bigger ρ', say 10, we would have ceil(50/(10+1)) = 5.
Yeh, algorithms skips forward less symbols than KMP does, in case ρ'=10 its running time is O(10n+m) while KMP has O(n+m).
I figured out the proof of correctness.
let k = ρ'(P) + 1, and ρ'(P) is the largest possible repetition factor out of all the prefixes of P.
Suppose T[s+1..s+q] = P[1..q], and either q=m or T[s+q+1] != P[q+1]
Then, for 1 <= j <= floor(q/k) (except for the case q=m and m mod k = 0, in which the upper limit must be ceil(m/k)), we have
T[s+1..s+j] = P[1..j]
T[s+j+1..s+2j] = P[j+1..2j]
T[s+2j+1..s+3j] = P[2j+1..3j]
...
T[s+(k-1)j+1..s+kj] = P[(k-1)j+1..kj]
where not every quantity on every line is equal, since k cannot be a repetition factor, since the largest possible repetition factor out of any prefix of P is k-1.
Suppose we now make a comparison at shift s' = s+j, so that we will make the following comparisons
T[s+j+1..s+2j] with P[1..j]
T[s+2j+1..s+3j] with P[j+1..2j]
T[s+3j+1..s+4j] with P[2j+1..3j]
...
T[s+kj+1..s+(k+1)j] with P[(k-1)j+1..kj]
We claim that not every comparison can match, e.g. at least one of the above "with"s must be replaced with !=. We prove by contradiction. Suppose every "with" above is replaced by =. Then, comparing to the first set of comparisons we did, we would immediately have the following:
P[1..j] = P[j+1..2j]
P[j+1..2j] = [2j+1..3j]
...
P[(k-2)j+1..(k-1)j] = P[(k-1)j+1..kj]
However, this cannot be true, because k is not a repetition factor, hence a contradiction.
Hence, for any 1 <= j <= floor(q/k), testing a new shift s'=s+j is guaranteed to mismatch.
Hence, the smallest shift that is possible to result in a match is s + floor(q/k) + 1 >= ceil(q/k).
Note the code uses ceil(q/k) for simplicity, solely to deal with the case that q = m and m mod k = 0, in which case k * (floor(q/k)+1) would be greater than m, so only ceil(q/k) would do. However, when q mod k = 0 and q < m, then ceil(q/k) = floor(q/k), so is slightly suboptimal, since that shift is guaranteed to fail, and floor(q/k)+1 is the first shift that has any chance of matching.

How to find set of shortest subsequences with minimal collisions from set of strings

I've got a list of strings like
Foobar
Foobaron
Foot
barstool
barfoo
footloose
I want to find the set of shortest possible sub-sequences that are unique to each string in the set; the characters in each sub-sequence do not need to be adjacent, just in order as they appear in the original string. For the example above, that would be (along other possibilities)
Fb (as unique to Foobar as it gets; collision with Foobaron unavoidable)
Fn (unique to Foobaron, no other ...F...n...)
Ft (Foot)
bs (barstool)
bf (barfoo)
e (footloose)
Is there an efficient way to mine such sequences and minimize the number of colliding strings (when collisions can't be avoided, e.g. when strings are substrings of other strings) from a given array of strings? More precisely, chosing the length N, what is the set of sub-sequences of up to N characters each that identify the original strings with the fewest number of collisions.
I would'nt really call that 'efficient', but you can do better than totally dumb like that:
words = ['Foobar', 'Foobaron', 'Foot', 'barstool', 'barfoo', 'footloose']
N = 2
n = len(words)
L = max([len(word) for word in words])
def generate_substrings(word, max_length=None):
if max_length is None:
max_length = len(word)
set_substrings = set()
set_substrings.add('')
for charac in word:
new_substr_list = []
for substr in set_substrings:
new_substr = substr + charac
if len(new_substr) <= max_length:
new_substr_list.append(new_substr)
set_substrings.update(new_substr_list)
return set_substrings
def get_best_substring_for_each(string_list=words, max_length=N):
all_substrings = {}
best = {}
for word in string_list:
for substring in generate_substrings(word, max_length=max_length):
if substring not in all_substrings:
all_substrings[substring] = 0
all_substrings[substring] = all_substrings[substring] + 1
for word in string_list:
best_score = len(string_list) + 1
best[word] = ''
for substring in generate_substrings(word=word, max_length=max_length):
if all_substrings[substring] < best_score:
best[word] = substring
best_score = all_substrings[substring]
return best
print(get_best_substring_for_each(words, N))
This program prints the solution:
{'barfoo': 'af', 'Foobar': 'Fr', 'Foobaron': 'n', 'footloose': 'os', 'barstool': 'al', 'Foot': 'Ft'}
This can still be improved easily by a constant factor, for instance by storing the results of generate_substringsinstead of computing it twice.
The complexity is O(n*C(N, L+N)), where n is the number of words and L the maximum length of a word, and C(n, k) is the number of combinations with k elements out of n.
I don't think (not sure though) that you can do much better in the worst case, because it seems hard not to enumerate all possible substrings in the worst case (the last one to be evaluated could be the only one with no redundancy...). Maybe in average you can do better...
You could use a modification to the longest common subsequence algorithm. In this case you are seeking the shortest unique subsequence. Shown below is part of a dynamic programming solution which is more efficient than a recursive solution. The modifications to the longest common subsequence algorithm are described in the comments below:
for (int i = 0; i < string1.Length; i++)
for (int j = 0; j < string2.Length; j++)
if (string1[i-1] != string2[j-1]) // find characters in the strings that are distinct
SUS[i][j] = SUS[i-1][j-1] + 1; // SUS: Shortest Unique Substring
else
SUS[i][j] = min(SUS[i-1][j], SUS[i][j-1]); // find minimum size of distinct strings
You can then put this code in a function and call this function for each string in your set to find the length of the shortest unique subsequence in the set.
Once you have the length of the shortest unique subsequence, you can backtrack to print the subsequence.
You should use modified Trie structure, insert strings to a trie in a way that :
Foo-bar-on
-t
bar-stool
-foo
The rest is straightforward, just choose correct compressed node[0] char
That Radix tree should help

Changing letters of a string to obtain maximum score

You are given a string and can change at most Q letters in the string. You are also given a list of substrings (each two characters long), with a corresponding score. Each occurance of the substring within the string adds to your total score. What is the maximum possible attainable score?
String length <= 150, Q <= 100, Number of Substrings <= 700
Example:
String = bpdcg
Q = 2
Substrings:
bz - score: 2
zd - score: 5
dm - score: 7
ng - score: 10
In this example, you can achieve the maximum score b changing the "p" in the string to a "z" and the "c" to an "n". Thus, your new string is "bzdng" which has a score of 2+5+10 = 17.
I know that given a string which already has the letters changed, the score can be checked in linear time using a dictionary matching algorithm such as aho-corasick (or with a slightly worse complexity, Rabin Karp). However, trying each two letter substitution will take too long and then checking will take too long.
Another possible method I thought was to work backwards, to construct the ideal string from the given substrings and then check whether it differs by at most two characters from the original string. However, I am not sure how to do this, and even if it could be done, I think that it would also take too long.
What is the best way to go about this?
An efficient way to solve this is to use dynamic programming.
Let L be the set of letters that start any of the length-2 scoring substrings, and a special letter "*" which stands for any other letter than these.
Let S(i, j, c) be the maximum score possible in the string (up to index i) using j substitutions, where the string ends with character c (where c in L).
The recurrence relations are a bit messy (or at least, I didn't find a particularly beautiful formulation of them), but here's some code that computes the largest score possible:
infinity = 100000000
def S1(L1, L2, s, i, j, c, scores, cache):
key = (i, j, c)
if key not in cache:
if i == 0:
if c != '*' and s[0] != c:
v = 0 if j >= 1 else -infinity
else:
v = 0 if j >= 0 else -infinity
else:
v = -infinity
for d in L1:
for c2 in [c] if c != '*' else L2 + s[i]:
jdiff = 1 if s[i] != c2 else 0
score = S1(L1, L2, s, i-1, j-jdiff, d, scores, cache)
score += scores.get(d+c2 , 0)
v = max(v, score)
cache[key] = v
return cache[key]
def S(s, Q, scores):
L1 = ''.join(sorted(set(w[0] for w in scores))) + '*'
L2 = ''.join(sorted(set(w[1] for w in scores)))
return S1(L1, L2, s + '.', len(s), Q, '.', scores, {})
print S('bpdcg', 2, {'bz': 2, 'zd': 5, 'dm': 7, 'ng': 10})
There's some room for optimisation:
the computation isn't terminated early if j goes negative
when given a choice, every value of L2 is tried, whereas only letters that can complete a scoring word from d need trying.
Overall, if there's k different letters in the scoring words, the algorithm runs in time O(QN*k^2). With the second optimisation above, this can be reduced to O(QNw) where w is the number of scoring words.

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