I would like to generate visualization of my neural network (PyTorch or ONNX model) similar to this using Graphcore Poplar.
I have looked in the documentation but I cannot find where this visualization feature is.
How can I achieve such a task ? Is there any other existing library ?
that visualization is not part of the Graphcore Poplar software. It is "data art" generated by the team at GraphCore.
It is a tough work and requires many hours to get to that fine quality, but if you are decided, I would suggest to start looking at graph visualization tools looking for "graph network visualization" (and get inspiration from galleries like https://cytoscape.org/screenshots.html).
The NN architecture can be converted into a common graph format (neurons as nodes, connections as edges) and then you may start trying.
Some ideas:
Start with a simple NN with three layers. Place the input layer at the outer circle, there is a inner circle for the hidden layer and the output layer is placed in the center. Each neuron is a dot, with radius relative to the weight and color with the bias, and you can displace it towards/away the neurons in the previous layers based on the weight. Check this image for inspiration if you are looking for a "biological" style: https://cytoscape.org/images/screenshots/edge_bundling3_1400px.png
Related
I know that it might be a dumb question, but I searched everywhere for an answer but I could not get.
Okay first properly explaining my question,
When I was learning CNN I was told that kernels or filters or activation map represent a feature of image.
To be specific, assume a cat image identification, a feature map would represent a "whiskers"
and in images which the activation of this feature map would be high it is inferred as whisker is present in image and so the image is a cat. (Correct me if I am wrong)
Well now when I made a Keras ConvNet I save the model
and then loaded the model and
saved all the filters to png images.
What I saw was 3x3 px images where each each pixel was of different colour (green, blue or their various variants and so on)
So how these 3x3px random colour pattern images of kernels represent in any way the "whisker" or any other feature of cat?
Or how could I know which png images is which feature ie which is whisker detector filter etc?
I am asking this because I might be asked in oral examination by teacher.
Sorry for the length of answer (but I had to make it so to explain properly)
You need to have a further look into how convolutional neural networks operate: the main topic being the convolution itself. The convolution occurs with the input image and filters/kernels to produce feature maps. A feature map is what may highlight important features.
The filters/kernels do not know anything of the input data so when you save these you are only going to see psuedo-random images.
Put simply, where * is the convolution operator,
input_image * filter = feature map
What you want to save, if you want to vizualise what is occuring during convolution, are the feature maps. This website gives a very detailed account on how to do so, and it is the method I have used in the past.
I have done implementation part of convolution neural network. But I am still confused about how to select the filter to obtain convolved feature in convolution neural network. As I know we detect features(like eyes, nose, mouth) to recognize a face from an image using convolution layer with the help of the filter.is it true that filter contains eyes, nose, mouth to recognize a face from an image?
There is no hard rule for this purpose.
In many university courses and even implemented models in papers, researcher uses 3x3 or 5x5 filters with with 1 or 2 strides.
It is one of your hyperparameters you should tune for your model. But the best way as a practice is to go to implemented model's documentations by google or others and find best size with respect to your conv layers.
But the last thing you should know is that the purpose of adding filters is to reduce nmber of parameters but keeping high quality features.
Here is a link to all models implemented using Tensoflow for different tasks.
Good luck
If I have an image which is WxHx3 (RGB), how do I decide how big to make the filter masks? Is it a function of the dimensions (W and H) or something else? How does the dimensions of the second, third, ... filters compare to the dimensions of the first filter? (Any concrete pointers would be appreciated.)
I have seen the following, but they don't answer the question.
Dimensions in convolutional neural network
Convolutional Neural Networks: How many pixels will be covered by each of the filters?
How do you decide the parameters of a Convolutional Neural Network for image classification?
It would be great if you add details what are you trying to extract from the image and details of the dataset that you are trying to use.
A general assumption can be drawn from Alexnet and ZFnet about the filter mask sizes that are needed to be considered. There is no specific formulation which size should be considered for particular format but the size is kept low if a deeper analysis is required as many smaller details might miss with larger filter sizes. In the above link with Inception networks describes how effectively you can utilize the computing resources. If you dont have the issue of the resources, then from ZFNet you can observe the visualizations in multiple layers, there are many finer details visible. We can call it CNN even if it has one layer of convolution and pooling layer. The number of layers depends on the deep finer requirements.
I am not expert, but can recommend if your dataset is small as few thousands and not many features extraction is required, and if you are not sure about the size you can just simply go with the small sizes (small best and popular is 5x5 - Lenet5).
I developed a CNN using MatConvNet and am able to visualize the weights of the 1st layer. It looked very similar to what is shown here (also attached below incase I am not specific enough) http://cs.stanford.edu/people/karpathy/convnetjs/demo/cifar10.html
My question is, what are the weight gradients ? I'm not sure what those are and am unable to generate those...
Weights in a NN
In a neural network, a series of linear functions represented as matrices are applied to features (usually with a nonlinear joint between them). These functions are determined by the values in the marices, referred to as weights.
You can visualize the weights of a normal neural network, but it usually means something slightly different to visualize the convolutional layers of a cnn. These layers are designed to learn a feature computation over the space.
When you visualize the weights, you're looking for patterns. A nice smooth filter may mean that the weights are well learned and "looking for something in particular". A noisy weight visualization may mean that you've undertrained your network, overfit it, need more regularization, or something else nefarious (a decent source for these claims).
From this decent review of weight visualizations, we can see patterns start to emerge from treating the weights as images:
Weight Gradients
"Visualizing the gradient" means taking the gradient matrix and treating like an image [1], just like you took the weight matrix and treated it like an image before.
A gradient is just a derivative; for images, it's usually computed as a finite difference - grossly simplified, the X gradient subtracts pixels next to each other in a row, and the Y gradient subtracts pixels next to each other in a column.
For the common example of a filter that extracts edges, we may see a strong gradient in a particular direction. By visualizing the gradients (taking the matrix of finite differences and treating it like an image), you can get a more immediate idea of how your filter is operating on the input. There are a lot of cutting edge techniques (eg, eg) for interpreting these results, but making the image pop up is the easy part!
A similar technique involves visualizing the activations after a forward pass over the input. In this case, you're looking at how the input was changed by the weights; by visualizing the weights, you're looking at how you expect them to change the input.
Don't over-think it - the weights are interesting because they let us see how the function behaves, and the gradients of the weights are just another feature to help explain what's going on. There's nothing sacred about that feature: here are some cool clustering features (t-SNE) from the google paper that look at space separability.
[1] It can be more complicated if you introduce weight sharing, but not that much
My answer here covers this question https://stackoverflow.com/a/68988426/10661506
Long story short, weight gradient of layer l is the gradient of the loss with respect to the weights of layer l.
If you have a correct implementation of backpropagation, you should have access to these gradients as they are needed to compute the weights update at every layer.
I am trying to train a classifier to separate images taken by a particle physics detector into two classes. For each image, I also have a coordinate (x,y,z) describing where the particle interaction took place. That coordinate is very useful is understanding these images by eye, but doesn't have an obvious translation to weighting image pixels.
I've been trying some basic machine learning techniques in scikit-learn, feeding in data points with 103 features: the three axes of the coordinates, and the 10x10 pixels of the image. Those basic techniques aren't cutting it, unfortunately, so I thought I'd try to take advantage of the properties of convolutional neural networks. Since I've never tried that before, Keras seemed like an easy way to get started.
Looking at Keras, I see that I ought to provide an input shape. I could presumably use a input shape of (103), but if I understand CNN correctly, I'd lose all the advantages of CNN for images. Intuitively, what I want the input shape to be is (3)+(10,10). Is that a sensible concept in the world of CNN? Can it be done in Keras?
You might want to look into the Merge layer. In essence this allows you to use two independent inputs, maybe give them a few different processing layers and them combine them for the rest of the model.
With this you could, for example, do several convolutional layers to process the image and then simply merge it with the coordinate inputs.