I am following [these][1] instructions on setting up a macOS virtual environment. I have followed all the instructions but when I get to the last part where I have to reload the startup file by making the following call in the terminal:
source ~/.bash_profile
I get the error message:
/Applications/Xcode.app/Contents/Developer/usr/bin/python3: Error while finding module specification for 'virtualenvwrapper.hook_loader' (ModuleNotFoundError: No module named 'virtualenvwrapper')
virtualenvwrapper.sh: There was a problem running the initialization hooks.
If Python could not import the module virtualenvwrapper.hook_loader,
check that virtualenvwrapper has been installed for
VIRTUALENVWRAPPER_PYTHON=/usr/bin/python3 and that PATH is
set properly.
I have tried different solutions from the internet but I am unable to get a fix.
Running which python3 and which virtualenvwrapper.sh returns:
/opt/anaconda3/bin/python3
/usr/local/bin/virtualenvwrapper.sh
My initial thoughts are that this may be due to the fact that I am running both anaconda python and regular python on the same computer.
[1]: https://developer.mozilla.org/en-US/docs/Learn/Server-side/Django/development_environment
Related
I am encoutering import errors, but only when running my python scripts from cmd or windows task scheduler (effectively the same issue I assume). I have researched answers already and attempted various solutions (detailed below), but nothing has worked yet. I need to understand the problem in any case so that I can manage anything like it in the future.
Here is the issue:
Windows 10. Anaconda Python 3.9.7. Virtual enviromnent.
I have a script that works fine if I open an anaconda prompt, activate the virtual environment and run it.
However, this is where the fun starts. If I try to run the script from the non-anaconda cmd prompt deploying the commands: "C:\Users\user\anaconda3\envs\venv\python.exe" "C:\Users\user\scripts\script.py" if get the following error:
ImportError: DLL load failed while importing etree: The specified module could not be found.
Traceback includes:
"C:\Users\user\anaconda3\envs\venv\lib\site-packages\lxml\html\__init__.py", line 53, in <module>
from ..import etree
This is not as simple as one specific module not being installed, because of course running the script from within the anaconda prompt and the virtual environment works. Similar also happens when I run other scripts. Other errors I have seen include, for example:
ImportError: DLL load failed while importing _imaging: The specified module could not be found.
Traceback includes:
"C:\Users\user\anaconda3\envs\venv\lib\site-packages\PIL\Image.py", line 114, in <module>
from . import _imaging as core
Also, I think this may be somehow related. Importing numpy (1.22.3) from within the python interpreter in the virtual environment works fine, but when I try to run a test script that imports numpy it fails both from anaconda and the cmd with the following error:
ImportError: cannot import name SystemRandom
The oveall issue was noted originally when trying to run various scripts from Windows Task Scheduler with the path to python "C:\Users\user\anaconda3\envs\venv\python.exe" entered as the Program/script and the script "script.py" entered as an argument. The above errors were produced, then reproduced by running the scripts from a non-anaconda cmd.
I am looking to understand what is happening here and for a solution that can get the scripts running from the virtual enviroment from Windows Task Scheduler effectively.
Update:
I have uninstalled and reinstalled numpy (and pandas) using conda. This has left the venv with numpy==1.20.3 (and pandas=1.4.2). On attempting to re-run one of the scripts, it runs fine from within the venv in anaconda, but produces the following error when attempting to run from cmd or from within Windows Task Scheduler as above:
ImportError: Unable to import required dependencies:
numpy:
IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
Importing the numpy C-extensions faled. This error can happen for many reasons, often due to issues with your setup or how NumPy was installed.
We have complied some common reasons and troubleshooting tips at:
https://numpy.org/devdocs/user/troubleshooting-importerror.html
Please note and check the following:
* The Python version is: Python3.9 from "C:\Users\user\anaconda3\envs\venv\python.exe"
* The NumPy version is "1.20.3"
and make sure that they are the versions you expect.
Please carefull study the documentation linked above for further help.
Original error was: DLL load failed while importing _multiarray_umath: The specified module could not be found.
I have looked into the solutions suggested, but am still completely at a loss, especially as to why the script runs from the venv in one place, but NOT the other.
I installed the library ase. Since then I can't execute python3 on terminal neither run its python files. I found out with the command which python3 command that with python3 is located at '/usr/local/bin/python3'. The libraries, including ase, are located at '/usr/local/lib/python3.9/site-packages' apparently.
See:
pip3 install --upgrade git+https://gitlab.com/ase/ase.git#master
WARNING: The scripts ase, ase-build, ase-db, ase-gui, ase-info and ase-run are installed in '/usr/local/Cellar/python#3.9/3.9.2_1/Frameworks/Python.framework/Versions/3.9/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
This is the error I got when I try to run python3 on terminal:
Fatal Python error: init_sys_streams: can't initialize sys standard streams
Python runtime state: core initialized
Traceback (most recent call last):
File "/usr/local/lib/python3.9/site-packages/ase/io/__init__.py", line 1, in <module>
ModuleNotFoundError: No module named 'ase'
I think that something has to be wrong at my .bash_profile file however, I'm not getting the error. Here is my edited .bash_profile:
export PYTHONPATH=/usr/local/lib/python3.9/site-packages/ase:$PYTHONPATH
export PATH=/usr/local/Cellar/python#3.9/3.9.2_1/Frameworks/Python.framework/Versions/3.9/bin:$PATH
Hope you can help me, thank you!
Update:
I changed my PYTHONPATH from:
export PYTHONPATH=/usr/local/lib/python3.9/site-packages/ase:$PYTHONPATH
to:
export PYTHONPATH=/usr/local/lib/python3.9/site-packages:$PYTHONPATH
Now I can run python3 on terminal again, however I try to execute ase directly on the terminal it seems that the command is not found.
-bash: ase: command not found
I have already checked out the requires (matplotlib, scipy, numpy) and they are all installed. Seems that everything is wrong with the PATH. I don't know what could be.
The binaries files related to ase package are not anymore into this directory "/usr/local/Cellar/python#3.9/3.9.2_1/Frameworks/Python.framework/Versions/3.9/bin". I don't know where they are since the installation was successfully done.
According to https://unix.stackexchange.com/questions/240037/why-did-pip-install-a-package-into-local-bin I redefined my paths to:
export PYTHONPATH=/usr/local/lib/python3.9/site-packages:$PYTHONPATH
export PATH=/usr/local/bin:$PATH
and seems to be working, I already ran a program containing that package, however when I enter the folder '/usr/local/bin' I don't find those binary files.
If you can help me again I will be grateful.
I have created an virtual env gcloudenv on my nividia nano running ubuntu. I was able to successfully install flask and required libraries and able to deploy my appengine into GCP from this virtual env. All my work is in python and I was using nano as my editor to get my code up and running. No issues so far.
my virtual env gcloudenv already has all the required packages for flask, jinga etc and I can see them when I run pip freeze.
Then I tried to work on Jupyter notebook as my code was getting little complicated and I didn't want to write full code and then run.
I already had jupyter notebook installed before creating the virtual env. I also installed jupyter within in virtual env as well.
So I followed the instruction to create a new kernel by running the following command:-
(gcloudenv) sunny#my-nano:~gcloudenv/MyApp/mainfolder$ pip install ipykernel
(gcloudenv) sunny#my-nano:~gcloudenv/MyApp/mainfolder$ ipython kernel install --user --
name=gcloudenv
Now, I ran the notebook as:
(gcloudenv) sunny#my-nano:~gcloudenv/MyApp/mainfolder$
/home/gcloudenv/bin/jupyter notebook
When trying to import the flask I get the following error:
ModuleNotFoundError: No module named 'flask'
Note sure what is going on as I getting blanked out.
Add
!pip install flask
in the beginning of your Jupyter notebook.
Finally I managed to solve my problem. Thanks to a wonderful post https://jakevdp.github.io/blog/2017/12/05/installing-python-packages-from-jupyter/.
In essence, I had 2 problems:-
1. I did not have a jupyter-notebook within my virtual env. Originally I thought I had it installed but that was incorrect. so whenever I tried to launch one, it was picking the first jupyter notebook it could find in the path.
The good way to find out which one is it pointing to , is to run which command
(gcloudenv) sunny#my-nano:~/gcloudenv$ which jupyter-notebook
For me, that was at:
/home/sunny/archiconda3/bin/jupyter-notebook
I had in fact 3 copies of jupyter-notebook on my system. One was probably installed using sudo pip and therefore went into the root folder. Probably not a good thing to do.
So I installed a fresh jupyter-notebook with the following command:-
(gcloudenv) $ pip install jupyter notebook
2.Next is to check list of Jupyter kernels available by running the following from the jupyter notebook ( or from command line):
!jupyter kernelspec list (OR (gcloudenv) $jupyter kernelspec list
My jupyter notebook was not able to import flask libraries because it was pointing to a wrong kernel config outside of my virtualenv gcloudenv.
Available kernels:
gcloudenv /home/sunny/.local/share/jupyter/kernels/gcloudenv ( correct one)
python3 /home/sunny/gcloudenv/share/jupyter/kernels/python3
You can determine which python version it is picking by doing a 'more' on the file:-
(gcloudenv) $
/more/home/sunny/.local/share/jupyter/kernels/gcloudenv/kernel.json
Once I changed my kernel to point to python3 from within the notebook, it picked the correct path and all the relevant libraries I needed.
In summary when you hit the problem as mentioned above, do the following:-
check the path of the python ( whereis python or which python)
check if you are running the 'right' notebook. This is determined by the path and if you have sourced your virtualenv.
Install jupyter notebook using pip from within your virtualenv( do not use sudo)
Check the Jupyter kernel. This may be particularly relevant if you have a common jupyter notebook and you want to work with multiple virtualenv.
I'm new to python so please be patient if i ask a silly question.
I am trying to use flask wtf class as seen in a tutorial.
My first line of the program is
from flask_wtf import FlaskForm
It gives me the error ModuleNotFoundError: No module named 'flask_wtf'
I have followed the following steps to make sure i have activated the virtual environment and flask wtf was installed in the virtual environment and not global.
Step 1: Went to the virtual environment and activated the environment C:\Users\Shraddha\PycharmProjects\FlaskProject\venv\scripts activate
Step 2: Installed flask wtf
C:\Users\Shraddha\PycharmProjects\FlaskProject\venv\scripts pip install flask-wtf
I see that flask-wtf is installed correctly in the folder C:\Users\Shraddha\PycharmProjects\FlaskProject\venv\Lib\site-packages
However when i try to run it using command prompt it does not give me anything and when i try to run it using sublime text it gives me ModuleNotFoundError: No module named 'flask_wtf' error.
I know this is a flask_wtf import error because other programs are executing as expected. Any help ?
If you start your virtual environment in the same dir as the file you are running doesn't that give access to the libraries in the install (ie everything shown in 'pip freeze' for the env)?
I faced same issue and tried all the approaches given on stackoverflow ImportError: No module named flask_wtf but didn't work for me.
I am using ubuntu 20.04 LTS operating system.
Note: To follow the given step you must activate your virtual environment.
I used:
pip3 freeze
which listed following directories
libries in my virtual environment
Then i tried the below command in the same directory
git clone git://github.com/lepture/flask-wtf.git
cd flask-wtf/
python3 setup.py install
Through the above commands i successfully installed flask_wtf as show below
installed flask_wtf
but then i faced the below error as i used email_validator in my forms.py file:
Exception: Install 'email_validator' for email validation support
Then I installed email_validator using following command
pip3 install email_validator
Then i successfully run my flask application. I am sure it will work for you too.
I have tried many ways of installing psycopg2 after having installed PostgreSQL using the one-click installer, but anyway I try confronts me with the same import error in python: ImportError: dlopen(/Library/Python/2.5/site-packages/psycopg2/_psycopg.so, 2): Library not loaded: libpq.5.dylib
Referenced from: /Library/Python/2.5/site-packages/psycopg2/_psycopg.so
Reason: image not found
I am on Mac OS X 10.5.8. I am using Python 2.5. I installed PostgreSQL from the installer (I did not port it) and it installed in /Library). I added /Library/PostgreSQL/9.1/bin to the setup.cfg of the source psycopg2, as instructed in the INSTALL file and everywhere on the internet and then ran sudo python setup.py build and then sudo python setup.py install.
I also tried exporting /Library/PostgreSQL/9.1/bin to my path instead and running sudo pip install psycopg2. But the exact same problem occurred in all of these scenarii.
I would greatly appreciate some help with this.
Best
Marion
The problem is that at runtime the libpq.5.dylib file can't be found because it is not in one of the default locations searched by the dynamic (runtime) linker. Try to define the environment variable DYLD_LIBRARY_PATH before launching python. I am no MacOS X expert but something like:
export DYLD_LIBRARY_PATH=/Library/PostgreSQL/9.1/lib
will probably work.