Ubuntu 20.04 croscompile using yocto jethro invalid gcc search paths - linux

I have been trying to cross-compile using toolchain from yocto-jethro BSP with the following error:
x86_64-poky-linux-gcc: error trying to exec 'cc1': execvp: No such file or directory
I can see that the search directories have been truncated.
x86_64-poky-linux-gcc --print-search-dirs returns:
# /mnt/data/Projects/tmr2-sdk/sdk/sysroots/x86_64-pokysdk-linux/usr/bin/x86_64-poky-linux/x86_64-poky-linux-gcc --print-search-dirs
install: oots/x86_64-pokysdk-linux/usr/lib/x86_64-poky-linux/gcc/x86_64-poky-linux/5.2.0/
programs: =oots/x86_64-pokysdk-linux/usr/libexec/x86_64-poky-linux/gcc/x86_64-poky-linux/5.2.0/:oots/x86_64-pokysdk-linux/usr/libexec/x86_64-poky-linux/gcc/x86_64-poky-linux/5.2.0/:oots/x86_64-pokysdk-linux/usr/libexec/x86_64-poky-linux/gcc/x86_64-poky-linux/:oots/x86_64-pokysdk-linux/usr/lib/x86_64-poky-linux/gcc/x86_64-poky-linux/5.2.0/:oots/x86_64-pokysdk-linux/usr/lib/x86_64-poky-linux/gcc/x86_64-poky-linux/:oots/x86_64-pokysdk-linux/usr/x86_64-poky-linux/bin/x86_64-poky-linux/5.2.0/:oots/x86_64-pokysdk-linux/usr/x86_64-poky-linux/bin/
libraries: =oots/x86_64-pokysdk-linux/usr/lib/x86_64-poky-linux/gcc/x86_64-poky-linux/5.2.0/:oots/x86_64-pokysdk-linux/usr/x86_64-poky-linux/lib/../lib/x86_64-poky-linux/5.2.0/:oots/x86_64-pokysdk-linux/usr/x86_64-poky-linux/lib/x86_64-poky-linux/5.2.0/:oots/x86_64-pokysdk-linux/usr/x86_64-poky-linux/lib/../lib/:/not/exist/lib/../lib/x86_64-poky-linux/5.2.0/:/not/exist/lib/x86_64-poky-linux/5.2.0/:/not/exist/lib/../lib/:/not/exist/usr/lib/../lib/x86_64-poky-linux/5.2.0/:/not/exist/usr/lib/x86_64-poky-linux/5.2.0/:/not/exist/usr/lib/../lib/:oots/x86_64-pokysdk-linux/usr/x86_64-poky-linux/lib/:/not/exist/lib/:/not/exist/usr/lib/
Directories should start with:
/mnt/data/Projects/tmr2-sdk/sdk/sysroots/
instead they start with:
oots
I get the same result when I source the environment-setup-target from yocto BSP or execute compiler directly.
Cross-compilation was working on ubuntu 18. Similar BSP created in yocto-sumo works on ubuntu 20.04
When I add --sysroots to GCC it effects only the libraries search dirs.
Does anyone have a clue on how can I resolve the issue or where to look to find the problem?
Where does the gcc take the search-dirs? I can see that sourcing environment-setup-target does not effect the compiler search-dirs.
Thanks for any hints

Fixed in later issues by commit:
https://git.yoctoproject.org/cgit.cgi/poky/commit/scripts/relocate_sdk.py?id=c3c793b4286367b7050c8ec92fb90a1a9f85a89a

Related

arm-none-eabi-objdump: error while loading shared libraries: libdebuginfod.so.1: cannot open shared object file

If you have an answer for this, or further information, I'd welcome it. I'm following advice from here, to offer some unsolicited help by posting this question then an answer I've already found for it.
I have a bare-metal ARM board for which I'm building a cross-toolchain, from sources for GNU binutils, gcc and gdb, and for SourceWare's Newlib. I got those four working and cross-built a DoNothing.c into an ELF file - but I couldn't disassemble it with this:
$ arm-none-eabi-objdump -S DoNothing.elf
The error was:
$ arm-none-eabi-objdump: error while loading shared libraries: libdebuginfod.so.1: cannot open shared object file: No such file or directory
I'll follow up with a solution.
The error was correct - my system didn't have libdebuginfod.so.1 installed - but I have another cross-binutils, installed from binary for a different target, and its objdump -S works fine on the same host. Why would one build of objdump complain about missing that shared library, when clearly not all builds of objdump need it?
First I tried rebuilding cross binutils, specifying --without-debuginfod as a configure option. No change, which seems odd: surely that should build tools that not only don't use debuginfod but which don't depend on it in any way. (If someone can answer that, or point out what I've misunderstood, it may help people.)
Next I figured debuginfod was inescapable (for my cross-tools built from source at least), so I'd install it to get rid of the error. It's a component of the elfutils package, but installing the latest elfutils available for my Ubuntu 20.04 system didn't bring libdebuginfod.so.1 with it.
I found a later one, for Arch Linux, whose package contents suggested it would - but its package format doesn't match Ubuntu's and installing it was going to involve a lot of work. Instead I opted to build it from the Arch Linux source package. However, running ./configure on that gave a couple of infuriatingly similar errors:
configure: checking libdebuginfod dependencies, --disable-libdebuginfod or --enable-libdebuginfo=dummy to skip
...
configure: error: dependencies not found, use --disable-libdebuginfod to disable or --enable-libdebuginfod=dummy to build a (bootstrap) dummy library.
No combination of those suggestions would allow configure for elfutils-0.182 to run to completion.
The problem of course was my own lack of understanding. The solution came from the Linux From Scratch project: what worked was to issue configure with both of the suggested options, like this:
$ ./configure --prefix=/usr \
--disable-debuginfod \
--enable-libdebuginfod=dummy \
--libdir=/lib
That gave a clean configure; make worked first time, as did make check and then sudo make install which of course installed libdebuginfod.so.1 as required. I then had an arm-none-eabi-objdump which disassembles cross-compiled ELF files without complaining.

problems building CodeLite

Having a heck of a time trying to build CodeLite for an ARM-based Ubuntu Linux target. (Build instructions here: http://codelite.org/Developers/Linux). I get an error from CMAKE that says Could not locate GTK2. Looking in the CmakeLists.txt file I can see that this is a result of find_package(GTK2) failing to find GTK2. I think I have installed gtk according to what the CodeLite build instructions say to do using the command sudo apt-get install libgtk2.0-dev.
In terms of cmake, I don't understand what a "package" is. How would I [manually] locate this package on my filesystem and how do I get cmake to find it?
For my aarch64 ubuntu 17.04, the libraries and headers were under /usr/lib/aarch64-linux-gnu, so invoking cmake with them produced the correct build files:
cmake -DCMAKE_INCLUDE_PATH=/usr/lib/aarch64-linux-gnu/ -DCMAKE_LIBRARY_PATH=/usr/lib/aarch64-linux-gnu/ -DCMAKE_BUILD_TYPE=Release .. -DCOPY_WX_LIBS=1

How do I install tcpslice from source, released for fedora, on a mac 64 bit?

The newest publicly available tcpslice version 1.2a1 (found on its github) has a bug where it expects 8 bytes for a time field but gets 16 (when in 64 bit). This leads to the error:
tcpslice: problems finding end packet of file ./abc1234.bin
I got my info for this error from: https://bugzilla.redhat.com/show_bug.cgi?id=485670
This led me to grab the updated version (1.2a3) from here and try compiling from source: http://pkgs.fedoraproject.org/repo/pkgs/tcpdump/tcpslice-1.2a3.tar.gz/. I think this is or close to the actual patch
HOWEVER, I couldn't ./configure this on my mac because it says (understandably) this:
checking build system type... configure: error: cannot guess build type; you must specify one
Not one to give up, and becuase I don't wnat to switch over to linux to continue deveolping my wrapper script, I tried to compile like this:
./configure --build=i686-pc-linux-gnu
This configured and make'd!!! However, its 32 bit which still gives the same error when I run the newly made tcpdump!!
Is this possible at all, and what other --build type can I use that is for x86_64 bit systems? No other --build types are compiling for me. I have no idea how to find acceptable build types, and am currently referenceing this: https://gcc.gnu.org/gcc-4.2/buildstat.html
EDIT: I tried Warren Young's suggestion here but libtoolize --force did not remake config.guess, so I manually downloaded the "newest" config.guess from the link on this page with curl. However, now ./configure says:
checking build system type... Invalid configuration `x86_64-apple-darwin15.4.0': machine `x86_64-apple' not recognized
configure: error: /bin/sh ./config.sub x86_64-apple-darwin15.4.0 failed
Am I screwed? Or can I sitll try a default x86_64 -build type (which I still cannot find):
checking build system type... Invalid configuration `x86_64': machine `x86_64' not recognized
configure: error: /bin/sh ./config.sub x86_64 failed
Welp, the answer was to manually download the newest config.guess and config.sub files from here: https://www.gnu.org/software/gettext/manual/html_node/config_002eguess.html and to overwrite the ones in the tcpslice directory.
However, the same problem still existed. There must be another reason the time issue is happening on the mac because this version of tcpslice worked fine on ubuntu on the same pcap.
Thanks to Warren Young's post in this question for guiding me in the right (though not successful) direction: Compiling tcpsplice on a 64-bit machine. Guess I'll be using ubuntu to finish my script!

How to install Open MPI with Cuda-Aware MPI in Linux Debian

I am installing Open MPI v1.8.8 with CUDA v7.5 on my Linux Debian.
I have tested CUDA and it works, tested OpenMPI and it works too. But when i try to combine them into a program, i meet an error: cannot find cuda.h file . This is my scenario:
My program source code include these .h file
include "cuda.h"
include "mpi.h"
I run command:
mpicc <filePath> -o test
And error appear:cuda.h: No such file or directory
#include "cuda.h"`
omp_info give me : mca:mpi:base:param:mpi_built_with_cuda_support:value:false
I have googled , and i followed some methods i found:
./configure --with-cuda
./configure --with-cuda=/usr/local/cuda-7.5
( source link : http://mirror.its.dal.ca/openmpi/faq/?category=buildcuda)
After that, i remake all , remake install Open Mpi. I run: mpicc or mpirun, the compiler give me error : mpirun error mca: base: component find: unable to open /usr/local/lib/openmpi/mca_mpool_sm
I set up soft link : ln -s /usr/local/cuda/include /usr/include ( describe in link : Building CUDA-aware openMPI on Ubuntu 12.04 cannot find cuda.h).
But it cannot fix my issue.
Does anyone successfully install it? Please help me or share your experience.
Thanks.
I think you are confusing installation problems with incorrect compiler options. It will be necessary to explicity specify the include paths, library paths, and libraries for CUDA when compiling and linking host code with your mpi wrapped host compiler.
Something like:
mpicc -I/usr/local/cuda-7.5/include -L/usr/local/cuda-7.5/lib -o test <filePath> -lcuda
would be the normal way to build a simple MPI program which call the cuda driver APIs. You will need to add nvcc compilation for device code and host code which uses the runtime API.
The apparent lack of CUDA support in your MPI flavour is a separate question and one you should probably take up in another forum (like the user mailing list of the MPI flavour you use).

Can't install Vision Workbench

I am trying to install the Vision Workbench on my computer, following the instructions from this homepage: http://lunokhod.org/?p=13. I have installed all dependencies but I have libboost1.54-all-dev instead since I am using Mint 17 (Ubuntu 14.4).
After that I have created the config.options file I do ./autogen and ./configure.
However, I get the following in the logfile:
configure:20861: /usr/include/boost is missing these required libraries: BOOST_PROGRAM_OPTIONS BOOST_FILESYSTEM BOOST_THREAD
Checking for a boost in /usr/include/boost-*
Checking for a boost in /usr/local/cuda/include
Checking for a boost in /usr/local/cuda/include/boost-*
configure:20875: checking for package BOOST
HAVE_PKG_BOOST=no
However, in /usr/include/boost/ I have booth program_options, filesystem and thread.
The .so files are under /usr/lib/x86_64-linux-gnu/ for opencv, boost and flann, but somehow it can only find flann.
Does anyone have an idea about where the error might be?
EDIT: In the log-file I saw that the program looked for cxcore when it searched for opencv, but in the new version it is called opencv_core so I did a symbolic link from cxcore to opencv_core and then ./configure finds opencv. However, boost is still a problem and is necessary to build the program.
EDIT2:
I have now downloaded an earlier version of boost (1.42), and almost all boost programs are found except BOOST_THREAD. When I install the boost library I get the following messages:
error: #error "Threading support unavaliable: it has been explicitly disabled with BOOST_DISABLE_THREADS"
/ Erik
try running
./configure --with-boost="path/to/boost"
if you have more than one version of boost installed, you may need to also set environment variables
HAVE_PKG_BOOST=yes
PKG_BOOST_CPPFLAGS=/path/to/boost
PKG_BOOST_LDFLAGS=/path/to/boost

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