How to copy from zip file to a folder without unzipping it? - python-3.x

How to make this code works?
There is a zip file with folders and .png files in it. Folder ".\icons_by_year" is empty. I need to get every file one by one without unzipping it and copy to the root of the selected folder (so no extra folders made).
class ArrangerOutZip(Arranger):
def __init__(self):
self.base_source_folder = '\\icons.zip'
self.base_output_folder = ".\\icons_by_year"
def proceed(self):
self.create_and_copy()
def create_and_copy(self):
reg_pattern = re.compile('.+\.\w{1,4}$')
f = open(self.base_source_folder, 'rb')
zfile = zipfile.ZipFile(f)
for cont in zfile.namelist():
if reg_pattern.match(cont):
with zfile.open(cont) as file:
shutil.copyfileobj(file, self.base_output_folder)
zfile.close()
f.close()
arranger = ArrangerOutZip()
arranger.proceed()

shutil.copyfileobj uses file objects for source and destination files. To open the destination you need to construct a file path for it. pathlib is a part of the standard python library and is a nice way to handle file paths. And ZipFile.extract does some of the work of creating intermediate output directories for you (plus sets file metadata) and can be used instead of copyfileobj.
One risk of unzipping files is that they can contain absolute or relative paths outside of the target directory you intend (e.g., "../../badvirus.exe"). extract is a bit too lax about that - putting those files in the root of the target directory - so I wrote a little something to reject the whole zip if you are being messed with.
With a few tweeks to make this a testable program,
from pathlib import Path
import re
import zipfile
#import shutil
#class ArrangerOutZip(Arranger):
class ArrangerOutZip:
def __init__(self, base_source_folder, base_output_folder):
self.base_source_folder = Path(base_source_folder).resolve(strict=True)
self.base_output_folder = Path(base_output_folder).resolve()
def proceed(self):
self.create_and_copy()
def create_and_copy(self):
"""Unzip files matching pattern to base_output_folder, raising
ValueError if any resulting paths are outside of that folder.
Output folder created if it does not exist."""
reg_pattern = re.compile('.+\.\w{1,4}$')
with open(self.base_source_folder, 'rb') as f:
with zipfile.ZipFile(f) as zfile:
wanted_files = [cont for cont in zfile.namelist()
if reg_pattern.match(cont)]
rebased_files = self._rebase_paths(wanted_files,
self.base_output_folder)
for cont, rebased in zip(wanted_files, rebased_files):
print(cont, rebased, rebased.parent)
# option 1: use shutil
#rebased.parent.mkdir(parents=True, exist_ok=True)
#with zfile.open(cont) as file, open(rebased, 'wb') as outfile:
# shutil.copyfileobj(file, outfile)
# option 2: zipfile does the work for you
zfile.extract(cont, self.base_output_folder)
#staticmethod
def _rebase_paths(pathlist, target_dir):
"""Rebase relative file paths to target directory, raising
ValueError if any resulting paths are not within target_dir"""
target = Path(target_dir).resolve()
newpaths = []
for path in pathlist:
newpath = target.joinpath(path).resolve()
newpath.relative_to(target) # raises ValueError if not subpath
newpaths.append(newpath)
return newpaths
#arranger = ArrangerOutZip('\\icons.zip', '.\\icons_by_year')
import sys
try:
arranger = ArrangerOutZip(sys.argv[1], sys.argv[2])
arranger.proceed()
except IndexError:
print("usage: test.py zipfile targetdir")

I'd take a look at the zipfile libraries' getinfo() and also ZipFile.Path() for construction since the constructor class can also use paths that way if you intend to do any creation.
Specifically PathObjects. This is able to do is to construct an object with a path in it, and it appears to be based on pathlib. Assuming you don't need to create zipfiles, you can ignore this ZipFile.Path()
However, that's not exactly what I wanted to point out. Rather consider the following:
zipfile.getinfo()
There is a person who I think is getting at this exact situation here:
https://www.programcreek.com/python/example/104991/zipfile.getinfo
This person seems to be getting a path using getinfo(). It's also clear that NOT every zipfile has the info.

Related

How to safely move a file to another directory in Python

The below works as expected:
import shutil
source = "c:\\mydir\myfile.txt"
dest_dir = "c:\\newdir"
shutil.move(source,dest_dir)
However, this also succeeds. I would want this to fail.
import shutil
source = "c:\\mydir"
dest_dir = "c:\\newdir"
shutil.move(source,dest_dir)
Any way to ensure that only a file is moved. Both Windows and Unix would be great. If not, Unix at least.
You could use pathlib's purepath.suffix to determine if a path points to a file or a directory, like so:
import pathlib
def points_to_file(path) -> bool:
if pathlib.PurePath(path).suffix:
return True
else:
return False
pathtodir = r'C:\Users\username'
pathtofile = r'C:\Users\username\filename.extension'
print (f'Does "{pathtodir}" point to a file? {points_to_file(pathtodir)}')
# Result -> Does "C:\Users\username" point to a file? False
print (f'Does "{pathtofile}" point to a file? {points_to_file(pathtofile)}')
# Result -> Does "C:\Users\username\filename.extension" point to a file? True
You can define a custom function to ensure that source is a file (with os.path.isfile function):
from os import path
def move_file(src, dst):
if not path.isfile(src):
raise IsADirectoryError('Source is not a file')
shutil.move(src, dst)

FileNotFoundError But The File Is There: Cryptography Edition

I'm working on a script that takes a checksum and directory as inputs.
Without too much background, I'm looking for 'malware' (ie. a flag) in a directory of executables. I'm given the SHA512 sum of the 'malware'. I've gotten it to work (I found the flag), but I ran into an issue with the output after generalizing the function for different cryptographic protocols, encodings, and individual files instead of directories:
FileNotFoundError: [Errno 2] No such file or directory : 'lessecho'
There is indeed a file lessecho in the directory, and as it happens, is close to the file that returns the actual flag. Probably a coincidence. Probably.
Below is my Python script:
#!/usr/bin/python3
import hashlib, sys, os
"""
### TO DO ###
Add other encryption techniques
Include file read functionality
"""
def main(to_check = sys.argv[1:]):
dir_to_check = to_check[0]
hash_to_check = to_check[1]
BUF_SIZE = 65536
for f in os.listdir(dir_to_check):
sha256 = hashlib.sha256()
with open(f, 'br') as f: <--- line where the issue occurs
while True:
data = f.read(BUF_SIZE)
if not data:
break
sha256.update(data)
f.close()
if sha256.hexdigest() == hash_to_check:
return f
if __name__ == '__main__':
k = main()
print(k)
Credit to Randall for his answer here
Here are some humble trinkets from my native land in exchange for your wisdom.
Your listdir call is giving you bare filenames (e.g. lessecho), but that is within the dir_to_check directory (which I'll call foo for convenience). To open the file, you need to join those two parts of the path back together, to get a proper path (e.g. foo/lessecho). The os.path.join function does exactly that:
for f in os.listdir(dir_to_check):
sha256 = hashlib.sha256()
with open(os.path.join(dir_to_check, f), 'br') as f: # add os.path.join call here!
...
There are a few other issues in the code, unrelated to your current error. One is that you're using the same variable name f for both the file name (from the loop) and file object (in the with statement). Pick a different name for one of them, since you need both available (because I assume you intend return f to return the filename, not the recently closed file object).
And speaking of the closed file, you're actually closing the file object twice. The first one happens at the end of the with statement (that's why you use with). The second is your manual call to f.close(). You don't need the manual call at all.

Python how to search files using regular expression [duplicate]

I recently started getting into Python and I am having a hard time searching through directories and matching files based on a regex that I have created.
Basically I want it to scan through all the directories in another directory and find all the files that ends with .zip or .rar or .r01 and then run various commands based on what file it is.
import os, re
rootdir = "/mnt/externa/Torrents/completed"
for subdir, dirs, files in os.walk(rootdir):
if re.search('(w?.zip)|(w?.rar)|(w?.r01)', files):
print "match: " . files
import os
import re
rootdir = "/mnt/externa/Torrents/completed"
regex = re.compile('(.*zip$)|(.*rar$)|(.*r01$)')
for root, dirs, files in os.walk(rootdir):
for file in files:
if regex.match(file):
print(file)
CODE BELLOW ANSWERS QUESTION IN FOLLOWING COMMENT
That worked really well, is there a way to do this if match is found on regex group 1 and do this if match is found on regex group 2 etc ? – nillenilsson
import os
import re
regex = re.compile('(.*zip$)|(.*rar$)|(.*r01$)')
rx = '(.*zip$)|(.*rar$)|(.*r01$)'
for root, dirs, files in os.walk("../Documents"):
for file in files:
res = re.match(rx, file)
if res:
if res.group(1):
print("ZIP",file)
if res.group(2):
print("RAR",file)
if res.group(3):
print("R01",file)
It might be possible to do this in a nicer way, but this works.
Given that you are a beginner, I would recommend using glob in place of a quickly written file-walking-regex matcher.
Snippets of functions using glob and a file-walking-regex matcher
The below snippet contains two file-regex searching functions (one using glob and the other using a custom file-walking-regex matcher). The snippet also contains a "stopwatch" function to time the two functions.
import os
import sys
from datetime import timedelta
from timeit import time
import os
import re
import glob
def stopwatch(method):
def timed(*args, **kw):
ts = time.perf_counter()
result = method(*args, **kw)
te = time.perf_counter()
duration = timedelta(seconds=te - ts)
print(f"{method.__name__}: {duration}")
return result
return timed
#stopwatch
def get_filepaths_with_oswalk(root_path: str, file_regex: str):
files_paths = []
pattern = re.compile(file_regex)
for root, directories, files in os.walk(root_path):
for file in files:
if pattern.match(file):
files_paths.append(os.path.join(root, file))
return files_paths
#stopwatch
def get_filepaths_with_glob(root_path: str, file_regex: str):
return glob.glob(os.path.join(root_path, file_regex))
Comparing runtimes of the above functions
On using the above two functions to find 5076 files matching the regex filename_*.csv in a dir called root_path (containing 66,948 files):
>>> glob_files = get_filepaths_with_glob(root_path, 'filename_*.csv')
get_filepaths_with_glob: 0:00:00.176400
>>> oswalk_files = get_filepaths_with_oswalk(root_path,'filename_(.*).csv')
get_filepaths_with_oswalk: 0:03:29.385379
The glob method is much faster and the code for it is shorter.
For your case
For your case, you can probably use something like the following to get your *.zip,*.rar and *.r01 files:
files = []
for ext in ['*.zip', '*.rar', '*.r01']:
files += get_filepaths_with_glob(root_path, ext)
Here's an alternative using glob.
from pathlib import Path
rootdir = "/mnt/externa/Torrents/completed"
for extension in 'zip rar r01'.split():
for path in Path(rootdir).glob('*.' + extension):
print("match: " + path)
I would do it this way:
import re
from pathlib import Path
def glob_re(path, regex="", glob_mask="**/*", inverse=False):
p = Path(path)
if inverse:
res = [str(f) for f in p.glob(glob_mask) if not re.search(regex, str(f))]
else:
res = [str(f) for f in p.glob(glob_mask) if re.search(regex, str(f))]
return res
NOTE: per default it will recursively scan all subdirectories. If you want to scan only the current directory then you should explicitly specify glob_mask="*"

How to save files to a directory and append those files to a list in Python?

Scenario:
I want to check whether if a directory contains a certain '.png' image file. If so, this image file along with all the other files (with png extension only) gets stored in a different directory. (The solution I am looking for should work in all OS platforms i.e Windows, Unix, etc.) and in a remote server i.e (FTP etc.)
I have tried the following code below:
import os, sys
import shutil
import pathlib
import glob
def search():
image_file = 'picture.png'
try:
arr = [] #List will be used to append all the files in a particular directory.
directory = pathlib.Path("collection") #checks if the collection directory exists.
files = []
#need to convert the PosixPath (directory) to a string.
[files.extend(glob.glob(str(directory) + "/**/*.png", recursive = True))]
res = [img for img in files if(img in image_file)] #checks if the image is within the list of files i.e 'picture.png' == 'collection\\picture.png'
if str(bool(res)): #If True...proceed
print("Image is available in image upload storage directory")
for file in files:
transfer_file = str(file)
shutil.copy(file, 'PNG_files/') #send all the files to a different directory i.e 'PNG_files' by using the shutil module.
arr.append(transfer_file)
return arr
else:
print("image not found in directory")
except OSError as e:
return e.errno
result = search() #result should return the 'arr' list. This list should contain png images only.
However, during execution, the For loop is not getting executed. Which means:
The image files are not stored in the 'PNG_files' directory.
The images are not getting appended in the 'arr' list.
The code above the For loop worked as expected. Can anyone explain to me what went wrong?
There are several issues:
In this line
res = [img for img in files if(img in image_file)] #checks if the image is within the list of files i.e 'picture.png' == 'collection\\picture.png'
you should check the other way around (as written in the comment): image_file in img, e.g. picture.png in collection/picture.png.
str(directory) + "/**/*.png" is not OS independent. If you need this to work on Windows, too, you should use os.path.join(str(directory), '**', '*.png') instead!
This check is incorrect: if str(bool(res)):. It's actually always true, because bool(res) is either True or False, str(bool(res)) is either "True" or "False", but both are actually True, as neither is an empty string. Correctly: if res:.
And finally, you're missing the creation of the PNG_files directory. You need to either manually create it before running the script, or call os.mkdir().

Home-made "look for files in directory" function runs, but not properly

I wrote a function that is supposed to look for all the file with the extension chosen, in the selected directory. Actually, it runs but it doesn't return anything.
I am trying to keep things simple/stupid, since I am just at the beginning of my journey in Python
Below, I reported the code.
Thanks for your help!
THIS ONE RUNS, BUT RETURNS AN EMPTY LIST
import fnmatch
import glob
def lookfor(dir, ext):
direct = glob.glob(dir)
files = []
for file in direct:
if fnmatch.fnmatch(file, ext):
files.append(file)
return files
print(lookfor('C:/Users/nameuser/where/folder/', '*.docx'))
THIS ONE WORKS PROPERLY, BUT ONLY FOR .docx FILE, AS WRITTEN INSIDE THE FUNCT
import fnmatch
import glob
def lookfor(dir):
direct = glob.glob(dir)
files = []
for file in direct:
if fnmatch.fnmatch(file, '*.docx'):
files.append(file)
return files
print(lookfor('C:/Users/nameuser/where/folder/*.docx'))

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