I am using Kafka sink connector to write data from Kafka to s3. The output data is partitioned into hourly buckets - year=yyyy/month=MM/day=dd/hour=hh. This data is used by a batch job downstream. So, before starting the downstream job, I need to be sure that no additional data will arrive in a given partition once the processing for that partition has started.
What is the best way to design this? How can I mark a partition as complete? i.e. no additional data will be written to it once marked as complete.
EDIT: I am using RecordField as timestamp.extractor. My kafka messages are guaranteed to be sorted within partitions by the partition field
Depends on which Timestamp Extractor you are using in the Sink config.
You would have to guarantee the no records can have a timestamp earlier than the time you consume it.
AFAIK, the only way that's possible is using the WallClock Timestamp Extractor. Otherwise, you are consuming a Kafka Record timestamp, or some timestamp within each message. Both of which can be overwritten on the Producer end to some event in the past
Related
I am writing a storage writer for spark structured streaming which will partition the given dataframe and write to a different blob store account. The spark documentation says the it ensures exactly once semantics for file sinks but also says that the exactly once semantics are only possible if the source is re-playable and the sink is idempotent.
Is the blob store an idempotent sink if I write in parquet format?
Also how will the behavior change if I am doing streamingDF.writestream.foreachbatch(...writing the DF here...).start()? Will it still guarantee exactly once semantics?
Possible duplicate : How to get Kafka offsets for structured query for manual and reliable offset management?
Update#1 : Something like -
output
.writeStream
.foreachBatch((df: DataFrame, _: Long) => {
path = storagePaths(r.nextInt(3))
df.persist()
df.write.parquet(path)
df.unpersist()
})
Micro-Batch Stream Processing
I assume that the question is about Micro-Batch Stream Processing (not Continuous Stream Processing).
Exactly once semantics are guaranteed based on available and committed offsets internal registries (for the current stream execution, aka runId) as well as regular checkpoints (to persist processing state across restarts).
exactly once semantics are only possible if the source is re-playable and the sink is idempotent.
It is possible that whatever has already been processed but not recorded properly internally (see below) can be re-processed:
That means that all streaming sources in a streaming query should be re-playable to allow for polling for data that has once been requested.
That also means that the sink should be idempotent so the data that has been processed successfully and added to the sink may be added again because a failure happened just before Structured Streaming managed to record the data (offsets) as successfully processed (in the checkpoint)
Internals
Before the available data (by offset) of any of the streaming source or reader is processed, MicroBatchExecution commits the offsets to Write-Ahead Log (WAL) and prints out the following INFO message to the logs:
Committed offsets for batch [currentBatchId]. Metadata [offsetSeqMetadata]
A streaming query (a micro-batch) is executed only when there is new data available (based on offsets) or the last execution requires another micro-batch for state management.
In addBatch phase, MicroBatchExecution requests the one and only Sink or StreamWriteSupport to process the available data.
Once a micro-batch finishes successfully the MicroBatchExecution commits the available offsets to commits checkpoint and the offsets are considered processed already.
MicroBatchExecution prints out the following DEBUG message to the logs:
Completed batch [currentBatchId]
When you use foreachBatch, spark guarantee only that foreachBatch will call only one time. But if you will have exception during execution foreachBatch, spark will try to call it again for same batch. In this case we can have duplication if we store to multiple storages and have exception during storing.
So you can manually handle exception during storing for avoid duplication.
In my practice I created custom sink if need to store to multiple storage and use datasource api v2 which support commit.
In my spark structured streaming application, I am reading messages from Kafka, filtering them and then finally persisting to Cassandra. I am using spark 2.4.1. From the structured streaming documentation
Fault Tolerance Semantics
Delivering end-to-end exactly-once semantics was one of key goals behind the design of Structured Streaming. To achieve that, we have designed the Structured Streaming sources, the sinks and the execution engine to reliably track the exact progress of the processing so that it can handle any kind of failure by restarting and/or reprocessing. Every streaming source is assumed to have offsets (similar to Kafka offsets, or Kinesis sequence numbers) to track the read position in the stream. The engine uses checkpointing and write-ahead logs to record the offset range of the data being processed in each trigger. The streaming sinks are designed to be idempotent for handling reprocessing. Together, using replayable sources and idempotent sinks, Structured Streaming can ensure end-to-end exactly-once semantics under any failure.
But I am not sure how does Spark actually achieve this. In my case, if the Cassandra cluster is down leading to failures in the write operation, will the checkpoint for Kafka not record those offsets.
Is the Kafka checkpoint offset based only on successful reads from Kafka, or the entire operation including write is considered for each message?
Spark Structured Streaming is not commiting offsets to kafka as a "normal" kafka consumer would do.
Spark is managing the offsets internally with a checkpointing mechanism.
Have a look at the first response of following question which gives a good explanation about how the state is managed with checkpoints and commitslog: How to get Kafka offsets for structured query for manual and reliable offset management?
Spark uses multiple log files to ensure fault tolerance.
The ones relevant to your query are the offset log and the commit log.
from the StreamExecution class doc:
/**
* A write-ahead-log that records the offsets that are present in each batch. In order to ensure
* that a given batch will always consist of the same data, we write to this log *before* any
* processing is done. Thus, the Nth record in this log indicated data that is currently being
* processed and the N-1th entry indicates which offsets have been durably committed to the sink.
*/
val offsetLog = new OffsetSeqLog(sparkSession, checkpointFile("offsets"))
/**
* A log that records the batch ids that have completed. This is used to check if a batch was
* fully processed, and its output was committed to the sink, hence no need to process it again.
* This is used (for instance) during restart, to help identify which batch to run next.
*/
val commitLog = new CommitLog(sparkSession, checkpointFile("commits"))
so when it reads from Kafka it writes the offsets to the offsetLog and only after processing the data and writing it to the sink (in your case Cassandra) it writes the offsets to the commitLog.
How do i compare the received record with previous record of same key in spark structured streaming. Can this be done using groupByKey and mapGroupWithState?
groupByKey(user)
mapGroupsWithState(GroupStateTimeout.NoTimeout)(updateAcrossEvents)
//Sample code from Spark Definitive Guide
There is one more question arising when we perform the above operations
I don't think so sequence of record will be maintained as the record is received it will partitioned and stored across worker nodes and when we apply groupByKey shuffle happens and all records with same key will be in the same worker node, but doesn't maintain the sequence.
You can use mapGroupsWithState for this. You will have to save the previous record in the group state and compare it with the incoming record.
What do you use as your source? If the source is Kafka you will have to partition the Kafka topic by the key that you are using.
I have a question regarding reading data with Spark Direct Streaming (Spark 1.6) from Kafka 0.9 saving in HBase.
I am trying to do updates on specific row-keys in an HBase table as recieved from Kafka and I need to ensure the order of events is kept (data received at t0 is saved in HBase for sure before data received at t1 ).
The row key, represents an UUID which is also the key of the message in Kafka, so at Kafka level, I am sure that the events corresponding to a specific UUID are ordered at partition level.
My problem begins when I start reading using Spark.
Using the direct stream approach, each executor will read from one partition. I am not doing any shuffling of data (just parse and save), so my events won't get messed up among the RDD, but I am worried that when the executor reads the partition, it won't maintain the order so I will end up with incorrect data in HBase when I save them.
How can I ensure that the order is kept at executor level, especially if I use multiple cores in one executor (which from my understanding result in multiple threads)?
I think I can also live with 1 core if this fixes the issue and by turning off speculative execution, enabling spark back pressure optimizations and keeping the maximum retries on executor to 1.
I have also thought about implementing a sort on the events at spark partition level using the Kafka offset.
Any advice?
Thanks a lot in advance!
Spark 2.2 introduced a Kafka's structured streaming source. As I understand, it's relying on HDFS checkpoint directory to store offsets and guarantee an "exactly-once" message delivery.
But old docks (like https://blog.cloudera.com/blog/2017/06/offset-management-for-apache-kafka-with-apache-spark-streaming/) says that Spark Streaming checkpoints are not recoverable across applications or Spark upgrades and hence not very reliable. As a solution, there is a practice to support storing offsets in external storage that supports transactions like MySQL or RedshiftDB.
If I want to store offsets from Kafka source to a transactional DB, how can I obtain offset from a structured stream batch?
Previously, it can be done by casting RDD to HasOffsetRanges:
val offsetRanges = rdd.asInstanceOf[HasOffsetRanges].offsetRanges
But with new Streaming API, I have an Dataset of InternalRow and I can't find an easy way to fetch offsets. The Sink API has only addBatch(batchId: Long, data: DataFrame) method and how can I suppose to get an offset for given batch id?
Spark 2.2 introduced a Kafka's structured streaming source. As I understand, it's relying on HDFS checkpoint dir to store offsets and guarantee an "exactly-once" message delivery.
Correct.
Every trigger Spark Structured Streaming will save offsets to offset directory in the checkpoint location (defined using checkpointLocation option or spark.sql.streaming.checkpointLocation Spark property or randomly assigned) that is supposed to guarantee that offsets are processed at most once. The feature is called Write Ahead Logs.
The other directory in the checkpoint location is commits directory for completed streaming batches with a single file per batch (with a file name being the batch id).
Quoting the official documentation in Fault Tolerance Semantics:
To achieve that, we have designed the Structured Streaming sources, the sinks and the execution engine to reliably track the exact progress of the processing so that it can handle any kind of failure by restarting and/or reprocessing. Every streaming source is assumed to have offsets (similar to Kafka offsets, or Kinesis sequence numbers) to track the read position in the stream. The engine uses checkpointing and write ahead logs to record the offset range of the data being processed in each trigger. The streaming sinks are designed to be idempotent for handling reprocessing. Together, using replayable sources and idempotent sinks, Structured Streaming can ensure end-to-end exactly-once semantics under any failure.
Every time a trigger is executed StreamExecution checks the directories and "computes" what offsets have been processed already. That gives you at least once semantics and exactly once in total.
But old docs (...) says that Spark Streaming checkpoints are not recoverable across applications or Spark upgrades and hence not very reliable.
There was a reason why you called them "old", wasn't there?
They refer to the old and (in my opinion) dead Spark Streaming that kept not only offsets but the entire query code that led to situations where the checkpointing were almost unusable, e.g. when you change the code.
The times are over now and Structured Streaming is more cautious what and when is checkpointed.
If I want to store offsets from Kafka source to a transactional DB, how can I obtain offset from a structured stream batch?
A solution could be to implement or somehow use MetadataLog interface that is used to deal with offset checkpointing. That could work.
how can I suppose to get an offset for given batch id?
It is not currently possible.
My understanding is that you will not be able to do it as the semantics of streaming are hidden from you. You simply should not be dealing with this low-level "thing" called offsets that Spark Structured Streaming uses to offer exactly once guarantees.
Quoting Michael Armbrust from his talk at Spark Summit Easy, Scalable, Fault Tolerant Stream Processing with Structured Streaming in Apache Spark:
you should not have to reason about streaming
and further in the talk (on the next slide):
you should write simple queries & Spark should continuously update the answer
There is a way to get offsets (from any source, Kafka including) using StreamingQueryProgress that you can intercept using StreamingQueryListener and onQueryProgress callback.
onQueryProgress(event: QueryProgressEvent): Unit Called when there is some status update (ingestion rate updated, etc.)
With StreamingQueryProgress you can access sources property with SourceProgress that gives you what you want.
Relevant Spark DEV mailing list discussion thread is here.
Summary from it:
Spark Streaming will support getting offsets in future versions (> 2.2.0). JIRA ticket to follow - https://issues-test.apache.org/jira/browse/SPARK-18258
For Spark <= 2.2.0, you can get offsets for the given batch by reading a json from checkpoint directory (the API is not stable, so be cautious):
val checkpointRoot = // read 'checkpointLocation' from custom sink params
val checkpointDir = new Path(new Path(checkpointRoot), "offsets").toUri.toString
val offsetSeqLog = new OffsetSeqLog(sparkSession, checkpointDir)
val endOffset: Map[TopicPartition, Long] = offsetSeqLog.get(batchId).map { endOffset =>
endOffset.offsets.filter(_.isDefined).map { str =>
JsonUtilsWrapper.jsonToOffsets(str.get.json)
}
}
/**
* Hack to access private API
* Put this class into org.apache.spark.sql.kafka010 package
*/
object JsonUtilsWrapper {
def offsetsToJson(partitionOffsets: Map[TopicPartition, Long]): String = {
JsonUtils.partitionOffsets(partitionOffsets)
}
def jsonToOffsets(str: String): Map[TopicPartition, Long] = {
JsonUtils.partitionOffsets(str)
}
}
This endOffset will contain the until offset for each topic/partition.
Getting the start offsets is problematic, cause you have to read the 'commit' checkpoint dir. But usually, you don't care about start offsets, because storing end offsets is enough for reliable Spark job re-start.
Please, note that you have to store the processed batch id in your storage as well. Spark can re-run failed batch with the same batch id in some cases, so make sure to initialize a Custom Sink with latest processed batch id (which you should read from external storage) and ignore any batch with id < latestProcessedBatchId. Btw, batch id is not unique across queries, so you have to store batch id for each query separately.
Streaming Dataset with Kafka source has offset as one of the field. You can simply query for all offsets in query and save them into JDBC Sink