Error while creating wheel while installing packages in Mac - python-3.x

This is the error I receive while installing packages from a file using pip install -r req.txt
Then it tried building wheels for collected packages: blis; cytoolz; murmurhash; preshed; regex, and I got a long error list.
typedef __uint32_t __darwin_useconds_t; /* [???] microseconds */
^
note: '__uint128_t' declared here
In file included from Python3/_regex.c:46:
In file included from /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/include/python3.8/Python.h:25:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:64:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/_stdio.h:71:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/_types.h:43:9: error: unknown type name '__uint32_t'; did you mean '__uint128_t'?
typedef __uint32_t __darwin_wctype_t;
^
note: '__uint128_t' declared here
In file included from Python3/_regex.c:46:
In file included from /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/include/python3.8/Python.h:25:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:64:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/_stdio.h:75:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/_types/_va_list.h:31:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/machine/types.h:37:2: error: architecture not supported
#error architecture not supported
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
error: command 'xcrun' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for regex```
Is something wrong with MacOS side because it is giving me bizarre errors.
Any leads appreciated.

Related

Installation of back-level version of h5py (2.10.0) fails .... wheel fails to build

I've tried this on Intel and ARM and both times it fails. I'm using a program, that needs to use 2.10.0. The 3.1.0 version works fine. I've played around with different dependencies and dead stuck.
Cam anyone help me figure out how to get this on either Mac?
Here is the error at the end:
#warning "Using deprecated NumPy API, disable it with " \
^
In file included from /private/var/folders/0m/8fmd9y8509v4xdcglsxv5rg40000gn/T/pip-install-0sjv5knz/h5py_75305355e2ca4b928d9fd980a5e2af77/h5py/defs.c:790:
./h5py/api_compat.h:27:10: fatal error: 'hdf5.h' file not found
#include "hdf5.h"
^~~~~~~~
1 warning and 1 error generated.
error: command '/usr/bin/clang' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
WARNING: No metadata found in /Users/p/.virtualenvs/pzdemo-fawkes/lib/python3.8/site-packages
Rolling back uninstall of h5py
Moving to /Users/p/.virtualenvs/pzdemo-fawkes/lib/python3.8/site-packages/h5py-3.8.0.dist-info/
from /Users/p/.virtualenvs/pzdemo-fawkes/lib/python3.8/site-packages/~5py-3.8.0.dist-info
Moving to /Users/p/.virtualenvs/pzdemo-fawkes/lib/python3.8/site-packages/h5py/
from /Users/p/.virtualenvs/pzdemo-fawkes/lib/python3.8/site-packages/~5py
error: legacy-install-failure
× Encountered error while trying to install package.
╰─> h5py```

Cant install Pyhash package on Mac OS 12.3.1 Monterey

I get this error when I run 'pip3 install pyhash'
return (__m64)__builtin_ia32_paddd((__v2si)__m1, (__v2si)__m2);
^ ~~~~~~~~~~~~
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
error: command '/usr/bin/clang' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: legacy-install-failure
× Encountered error while trying to install package.
╰─> pyhash
What can I do to fix this. I have spent many hours trying to figure this out and it always leads me to this same error.

How to fix error pip install twisted on mac?

I am trying to pip install twisted on mac 10.15.6, python 3.8
Got a bunch of architecture not supported errors (for example, __uint32_t unknown).
Here is the output when I run pip install twisted:
xcrun -sdk macosx clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -iwithsysroot/System/Library/Frameworks/System.framework/PrivateHeaders -iwithsysroot/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/Headers -arch arm64 -arch x86_64 -I/Users/damon/workspace/trial/crawlers/venv/include -I/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/include/python3.8 -c src/twisted/test/raiser.c -o build/temp.macosx-10.14.6-x86_64-3.8/src/twisted/test/raiser.o
In file included from src/twisted/test/raiser.c:4:
In file included from /Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/include/python3.8/Python.h:11:
In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/limits.h:21:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/limits.h:63:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/cdefs.h:807:2: error: Unsupported architecture
#error Unsupported architecture
^
In file included from src/twisted/test/raiser.c:4:
In file included from /Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/include/python3.8/Python.h:11:
In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/limits.h:21:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/limits.h:64:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/machine/limits.h:8:2: error: architecture not supported
#error architecture not supported
^
In file included from src/twisted/test/raiser.c:4:
In file included from /Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/include/python3.8/Python.h:25:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/stdio.h:64:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/_stdio.h:71:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/_types.h:27:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/_types.h:33:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/machine/_types.h:34:2: error: architecture not supported
#error architecture not supported
^
In file included from src/twisted/test/raiser.c:4:
In file included from /Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/include/python3.8/Python.h:25:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/stdio.h:64:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/_stdio.h:71:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/_types.h:27:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/_types.h:55:9: error: unknown type name '__int64_t'
typedef __int64_t __darwin_blkcnt_t; /* total blocks */
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/_types.h:56:9: error: unknown type name '__int32_t'; did you mean '__int128_t'?
typedef __int32_t __darwin_blksize_t; /* preferred block size */
^
note: '__int128_t' declared here
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/_types.h:57:9: error: unknown type name '__int32_t'; did you mean '__int128_t'?
typedef __int32_t __darwin_dev_t; /* dev_t */
^
note: '__int128_t' declared here
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/_types.h:60:9: error: unknown type name '__uint32_t'; did you mean '__uint128_t'?
typedef __uint32_t __darwin_gid_t; /* [???] process and group IDs */
^
note: '__uint128_t' declared here
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/_types.h:61:9: error: unknown type name '__uint32_t'; did you mean '__uint128_t'?
typedef __uint32_t __darwin_id_t; /* [XSI] pid_t, uid_t, or gid_t*/
^
note: '__uint128_t' declared here
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/_types.h:62:9: error: unknown type name '__uint64_t'
typedef __uint64_t __darwin_ino64_t; /* [???] Used for 64 bit inodes */
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/_types.h:68:9: error: unknown type name '__darwin_natural_t'
typedef __darwin_natural_t __darwin_mach_port_name_t; /* Used by mach */
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/_types.h:70:9: error: unknown type name '__uint16_t'; did you mean '__uint128_t'?
typedef __uint16_t __darwin_mode_t; /* [???] Some file attributes */
^
note: '__uint128_t' declared here
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/_types.h:71:9: error: unknown type name '__int64_t'
typedef __int64_t __darwin_off_t; /* [???] Used for file sizes */
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/_types.h:72:9: error: unknown type name '__int32_t'; did you mean '__int128_t'?
typedef __int32_t __darwin_pid_t; /* [???] process and group IDs */
^
note: '__int128_t' declared here
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/_types.h:73:9: error: unknown type name '__uint32_t'; did you mean '__uint128_t'?
typedef __uint32_t __darwin_sigset_t; /* [???] signal set */
^
note: '__uint128_t' declared here
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/_types.h:74:9: error: unknown type name '__int32_t'; did you mean '__int128_t'?
typedef __int32_t __darwin_suseconds_t; /* [???] microseconds */
^
note: '__int128_t' declared here
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/_types.h:75:9: error: unknown type name '__uint32_t'; did you mean '__uint128_t'?
typedef __uint32_t __darwin_uid_t; /* [???] user IDs */
^
note: '__uint128_t' declared here
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/_types.h:76:9: error: unknown type name '__uint32_t'; did you mean '__uint128_t'?
typedef __uint32_t __darwin_useconds_t; /* [???] microseconds */
^
note: '__uint128_t' declared here
In file included from src/twisted/test/raiser.c:4:
In file included from /Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/include/python3.8/Python.h:25:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/stdio.h:64:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/_stdio.h:71:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/_types.h:43:9: error: unknown type name '__uint32_t'; did you mean '__uint128_t'?
typedef __uint32_t __darwin_wctype_t;
^
note: '__uint128_t' declared here
In file included from src/twisted/test/raiser.c:4:
In file included from /Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/include/python3.8/Python.h:25:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/stdio.h:64:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/_stdio.h:75:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/sys/_types/_va_list.h:31:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include/machine/types.h:37:2: error: architecture not supported
#error architecture not supported
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
error: command 'xcrun' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /Users/damon/workspace/trial/crawlers/venv/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/qh/fkxm282s3b5288r2gkxmnwwh0000gq/T/pycharm-packaging/twisted/setup.py'"'"'; __file__='"'"'/private/var/folders/qh/fkxm282s3b5288r2gkxmnwwh0000gq/T/pycharm-packaging/twisted/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/qh/fkxm282s3b5288r2gkxmnwwh0000gq/T/pip-record-qj5hygum/install-record.txt --single-version-externally-managed --compile --install-headers /Users/damon/workspace/trial/crawlers/venv/include/site/python3.8/Twisted Check the logs for full command output.
Any help is appreciated.
Thank you!
Make sure you have xcode installed
xcode-select --install
also check the python version , I found it to work on 3.8.5 but failed on 3.8.2
By upgrade python to 3.8.5 (from 3.8.2) I successfully install twisted with pip.I install new version python with offical installer.python.org But I stuck for a long time for not find python3 linkto new install path.Finally I restart my terminal and find python3 link to new version.LOL

Error when compiling pytorch: 'cstdint' file not found

I was attempting to compile pytorch using NO_CUDA=1 python setup.py install on Mac OS X, but I got these errors:
In file included from /Users/ezyang/Dev/pytorch-tmp/torch/lib/tmp_install/include/THPP/Tensor.hpp:3:
/Users/ezyang/Dev/pytorch-tmp/torch/lib/tmp_install/include/THPP/Storage.hpp:6:10: fatal error:
'cstdint' file not found
#include <cstdint>
^
1 error generated.
In file included from torch/csrc/autograd/functions/init.cpp:2:
In file included from torch/csrc/autograd/functions/batch_normalization.h:4:
In file included from /Users/ezyang/Dev/pytorch-tmp/torch/lib/tmp_install/include/THPP/THPP.h:4:
/Users/ezyang/Dev/pytorch-tmp/torch/lib/tmp_install/include/THPP/Storage.hpp:6:10: fatal error:
'cstdint' file not found
#include <cstdint>
^
1 error generated.
1 error generated.
1 error generated.
1 error generated.
In file included from torch/csrc/autograd/python_hook.cpp:5:
In file included from /Users/ezyang/Dev/pytorch-tmp/torch/csrc/THP.h:32:
/Users/ezyang/Dev/pytorch-tmp/torch/csrc/utils.h:6:10: fatal error:
'type_traits' file not found
#include <type_traits>
^
13 errors generated.
1 error generated.
1 error generated.
error: command 'gcc' failed with exit status 1
You need to setup environment variables to have Python use the correct C compiler on OS X. You should do this instead:
NO_CUDA=1 MACOSX_DEPLOYMENT_TARGET=10.9 CC=clang CXX=clang++ python setup.py install

Installing octave package in ubuntu

anyone can help me with this error?
octave:4> pkg install signal-1.2.0.tar.gz
error: the following dependencies where unsatisfied:
signal needs optim >= 1.0.0
signal needs specfun >= 0.0.0
signal needs control >= 2.2.3
signal needs general >= 1.3.2
octave:4> pkg install optim-1.2.2.tar.gz
error: the following dependencies where unsatisfied:
optim needs miscellaneous >= 1.0.10
optim needs struct >= 1.0.10
octave:4> pkg install struct-1.0.10.tar.gz
make: /usr/bin/mkoctfile: Command not found
make: *** [fields2cell.oct] Error 127
'make' returned the following error: make: Entering directory `/tmp/oct-fDBs5k/struct-1.0.10/src'
/usr/bin/mkoctfile -s fields2cell.cc
make: Leaving directory `/tmp/oct-fDBs5k/struct-1.0.10/src'
error: called from `pkg>configure_make' in file /usr/share/octave/3.6.2/m/pkg/pkg.m near line 1391, column 9
error: called from:
error: /usr/share/octave/3.6.2/m/pkg/pkg.m at line 834, column 5
error: /usr/share/octave/3.6.2/m/pkg/pkg.m at line 383, column 9
I need to install signal package, but I have to download other to work from I have noticed but it gets stuck when installing struct package.
#edit
The same error when trying to install misc~ package.
octave:5> pkg install miscellaneous-1.2.0.tar.gz
error: the following dependencies where unsatisfied:
miscellaneous needs general >= 1.3.1
octave:5> pkg install general-1.3.2.tar.gz
make: /usr/bin/mkoctfile: Command not found
make: *** [__exit__.oct] Error 127
'make' returned the following error: make: Entering directory `/tmp/oct-CA6o4U/general/src'
/usr/bin/mkoctfile __exit__.cc
make: Leaving directory `/tmp/oct-CA6o4U/general/src'
error: called from `pkg>configure_make' in file /usr/share/octave/3.6.2/m/pkg/pkg.m near line 1391, column 9
error: called from:
error: /usr/share/octave/3.6.2/m/pkg/pkg.m at line 834, column 5
error: /usr/share/octave/3.6.2/m/pkg/pkg.m at line 383, column 9
#edit
additional info:
octave:6> which mkoctfile
`mkoctfile' is a function from the file /usr/share/octave/3.6.2/m/miscellaneous/mkoctfile.m
I have no idea what to do..
You need to install mkoctfile. Depending on your ubuntu version this will be in different packages. It used be in octave-pkg-dev but now is on liboctave-dev.
Ubuntu and Debian place this as separate package because it is only needed if you want to build the packages yourself. They expect you to use the Octave packages that they packaged (sudo apt-get install octave-signal). Their versions will be behind the actual version but the same happens with the Octave version they distribute. That's the price to pay for stability.

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