[Image here]
1I want to plot mode of as a line that comes from a bunch of lines. But I get value error as follows:
ValueError: x and y must have same first dimension, but have shapes (1, 159) and (2, 1, 159)
How to solve it?
My Code is as follows:
from glob import glob
import numpy as np
import matplotlib.pyplot as plt
%matplotlib inline
from scipy import stats
hvsra = []
for filename in glob('*.hv'):
with open(filename) as f:
hv = np.genfromtxt(f)
hv_m = np.ma.array(hv)
new_hv = hv_m[:,0:2]
freq = new_hv[:,0]
freq_new = np.reshape(freq_arr, (1, 159))
amp = new_hv[:,1]
hvsra.append(amp)
hvsr = np.array(hvsra)
hvsrm = stats.mode(hvsr)
plt.figure(figsize=(12, 8))
plt.loglog(freq_new,
hvsrm)
Thanks for your help.
Related
I want to divide and color points,val_lab(611,3) by their labels,pred_LAB(611,)
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
fig = plt.figure()
ax = plt.axes(projection = '3d')
ax.set_xlabel('L')
ax.set_ylabel('A')
ax.set_zlabel('B')
for i in range(0, len(val_lab)):
ax.scatter3D(
val_lab[i,0],
val_lab[i,1],
val_lab[i,2],
s = 8,
marker='o',
c = pred_LAB
#cmap = 'rainbow'
)
#ax.legend(*points.legend_elements(), title = 'clusters')
plt.show()
The problem is it shows error,
c' argument has 611 elements, which is not acceptable for use with 'x'
with size 1, 'y' with size 1.
However, if the dataset only have ten points,it can show the figure correctly, I don't know how to solve this problem, besides, how to add legend of this figure?
In your solution you would want to replace c = pred_LAB with c = pred_LAB[i]. But you do not have to use a for loop to plot the data. You can just use the following:
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
# generate random input data
val_lab = np.random.randint(0,10,(611,3))
pred_LAB = np.random.uniform(0,1, (611,))
# plot data
fig = plt.figure()
ax = plt.axes(projection = '3d')
ax.set_xlabel('L')
ax.set_ylabel('A')
ax.set_zlabel('B')
# create one 3D scatter plot - no for loop
ax.scatter3D(
val_lab[:,0],
val_lab[:,1],
val_lab[:,2],
s = 8,
marker='o',
c = pred_LAB,
cmap = 'rainbow',
label='my points'
)
# add legend
plt.legend()
plt.show()
Why I am getting a runtime error while running this code?? I wanted to show two SST data in a single plot using for loop. while I am running the code it shows your system has crashed. I am sharing the screenshot of the system log.
Screenshot of the error
import numpy as np
import matplotlib.pyplot as plt
from mpl_toolkits.basemap import Basemap
from netCDF4 import Dataset
from mpl_toolkits.axes_grid1 import ImageGrid
def read_sst (x):
ncfile=x
fh=Dataset(ncfile,mode='r')
sst=fh.variables['sst'][:]
sst_anom=sst[0,:,:]
return sst_anom
sst_anom_drought=read_sst("Drought_SST_Mean_Anomaly_Composite_1901-2014.nc")
sst_anom_flood=read_sst("Flood_SST_Mean_Anomaly_Composite_1901-2014.nc")
SST_ncfile='Flood_SST_Mean_Anomaly_Composite_1901-2014.nc'
fh1=Dataset(SST_ncfile,mode='r')
lons = fh1.variables['longitude'][:]
lats = fh1.variables['latitude'][:]
sst_data=[sst_anom_drought,sst_anom_flood]
fig = plt.figure(1,(15.,5.))
grid_top = ImageGrid(fig, 111, nrows_ncols = (2, 1),axes_pad=0.5)
cbar_ax = fig.add_axes([0.25,0.15, 0.55, 0.015])
for g, s in zip(grid_top,sst_data):
plt.sca(g)
m = Basemap(resolution='l',projection='merc',llcrnrlon=30, llcrnrlat=-31,
urcrnrlon=360, urcrnrlat=65)
clevs = np.linspace(-0.8, 0.8, 15)
lons, lats = np.meshgrid(lons, lats)
xi, yi = m(lons, lats)
color_map = plt.cm.RdBu_r
#reversed_color_map = color_map.reversed()
cs = m.contourf(xi,yi,s,clevs,cmap=color_map,extend='both')
cb=fig.colorbar(cs,orientation="horizontal",cax=cbar_ax)
m.drawparallels(np.arange(-30., 65., 15.), labels=[1,0,0,0], fontsize=12,linewidth=0.1)
m.drawmeridians(np.arange(-180., 180., 40.), labels=[0,0,0,1], fontsize=12,linewidth=0.1)
m.fillcontinents(color='whitesmoke',lake_color='whitesmoke')
m.drawcoastlines()
I want to plot a 3d histogram of a colored image but I can only plot R and G value. what am I doing wrong here? or is there an easier way to do so
import numpy as np
import matplotlib.image as mpimg
from matplotlib import pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
img = mpimg.imread('model/obj4__0.png')
pixels = img.shape[0]*img.shape[1]
channels = 3
data = np.reshape(img[:, :, :channels], (pixels, channels))
histo_rgb, _ = np.histogramdd(data, bins=256)
histo_rg = np.sum(histo_rgb, 2)
levels = np.arange(256)
fig = plt.figure()
ax = fig.add_subplot(111, projection='3d')
for g in levels:
ax.bar(levels, histo_rg[:, g], zs=g, zdir='y', color='r')
ax.set_xlabel('Red')
ax.set_ylabel('Green')
ax.set_zlabel('Number of pixels')
plt.show()
If I understand your question well, I have the same issue, and found this: https://www.bogotobogo.com/python/OpenCV_Python/python_opencv3_image_histogram_calcHist.php
Here is the code for your question:
import cv2
import numpy as np
from matplotlib import pyplot as plt
img = cv2.imread('images/GoldenGateSunset.png', -1)
cv2.imshow('GoldenGate',img)
color = ('b','g','r')
for channel,col in enumerate(color):
histr = cv2.calcHist([img],[channel],None,[256],[0,256])
plt.plot(histr,color = col)
plt.xlim([0,256])
plt.title('Histogram for color scale picture')
plt.show()
while True:
k = cv2.waitKey(0) & 0xFF
if k == 27: break # ESC key to exit
cv2.destroyAllWindows()
Note that this use cv2 functions but you can convert it to works with Numpy.
I will try to figure out with numpy and give you an update.
I have a .csv file which contains some data where x, y, x1, y1 are the coordinate points, and p is the value. My below code is working very well for plotting, but when I am plotting the data, I am getting a background color like the purple color. I don't want any color in the background. I want the background will be Transparent. My ultimate goal is overlying this result over an image. I am new in Python. Any help will be highly appreciated.
Download link of the .csv file here or link-2 or link-3
I am getting below result
My Code
import matplotlib.pyplot as plt
from scipy import ndimage
import numpy as np
import pandas as pd
from skimage import transform
from PIL import Image
import cv2
x_dim=1200
y_dim=1200
# Read CSV
df = pd.read_csv("flower_feature.csv")
# Create numpy array of zeros os same size
array = np.zeros((x_dim, y_dim), dtype=np.uint8)
for index, row in df.iterrows():
x = np.int(row["x"])
y = np.int(row["y"])
x1 = np.int(row["x1"])
y1 = np.int(row["y1"])
p = row["p"]
array[x:x1,y:y1] = p
map = ndimage.filters.gaussian_filter(array, sigma=16)
plt.imshow(map)
plt.show()
As per Ghassen's suggestion I am getting below results. I am still not getting the transparent background.
When Alpha =0
When alpha =0.5
When alpha =1
try with this code :
import matplotlib.pyplot as plt
from scipy import ndimage
import numpy as np
import pandas as pd
x_dim=1200
y_dim=1200
# Read CSV
df = pd.read_csv("/home/rosafi/Downloads/flower_feature.csv")
# Create numpy array of zeros os same size
array = np.ones((x_dim, y_dim), dtype=np.uint8)
for index, row in df.iterrows():
x = np.int(row["x"])
y = np.int(row["y"])
x1 = np.int(row["x1"])
y1 = np.int(row["y1"])
p = row["p"]
array[x:x1,y:y1] = p
map = ndimage.filters.gaussian_filter(array, sigma=16)
map = np.ma.masked_where(map == 0, map)
plt.imshow(map)
plt.show()
output:
I solved this issue by masking out the values where values ==0. The code will be
from mpl_toolkits.axes_grid1 import make_axes_locatable
masked_data = np.ma.masked_where(map == 0, map)
file contains values of echos w.r.t to lat/long, I have to plot complete range of echos over base map.
from netCDF4 import Dataset
import numpy as np
import pandas as pd
from google.colab import files
upload = files.upload()
my_example_nc_file = 'a.nc'
fh = Dataset(my_example_nc_file, mode='r')
lons = fh.variables['longitude'][:]
lats = fh.variables['latitude'][:]
ech= fh.variables['echos'][:]
from mpl_toolkits.basemap import Basemap
import matplotlib.pyplot as plt
%matplotlib inline
m = Basemap(width=5000000,height=3500000,
resolution='l',projection='stere',\
lat_ts=40,lat_0=lat_0,lon_0=lon_0)
xi, yi = m(lons, lats)
#simple plot
#m.plot(xi, yi, 'co')
m.scatter(rge,yi, marker = 'o', color='r', zorder=5)
Current code execute below results.
enter image description here
I want to plot total echos with variation represented by colors as presented in below screen short
enter image description here