We have Cassandra table person,
CREATE TABLE test.person (
name text PRIMARY KEY,
score bigint
)
and Dataframe is,
val caseClassDF = Seq(Person("Andy1", 32), Person("Mark1", 27), Person("Ron", 27),Person("Andy1", 20),Person("Ron", 270),Person("Ron", 2700),Person("Mark1", 37),Person("Andy1", 200),Person("Andy1", 2000)).toDF()
In Spark We wanted to save dataframe to table , where dataframe is having multiple records for the same primary key.
Q 1: How Cassandra Connector internally handles ordering of the rows?
Q2: We are reading data from kafka and saving to Cassandra, and our batch will always have multiple events like above. We want to save the latest score to Cassandra. Any suggestion how we can achieve this??
Connector version we used is spark-cassandra-connector_2.12:3.2.1
Here are some Observation from our side,
val spark = SparkSession.builder()
.master("local[1]")
.appName("CassandraConnector")
.config("spark.cassandra.connection.host", "")
.config("spark.cassandra.connection.port", "")
.config("spark.sql.extensions", "com.datastax.spark.connector.CassandraSparkExtensions")
.getOrCreate()
val caseClassDF = Seq(Person("Andy1", 32), Person("Mark1", 27), Person("Ron", 27),Person("Andy1", 20),Person("Ron", 270),Person("Ron", 2700),Person("Mark1", 37),Person("Andy1", 200),Person("Andy1", 2000)).toDF()
caseClassDF.write
.format("org.apache.spark.sql.cassandra")
.option("keyspace", "test")
.option("table", "person")
.mode("APPEND")
.save()
When we have
.master("local[1]")
then in Cassandra table, we always see score 2000 for "Andy1" and 2700 fro "Ron", this is the latest in the Seq
Now when we change to,
.master("local[*]") OR .master("local[2]")
then we see some random score in Cassandra table, either 200 or 32 for "Andy1".
Note : We did each run on fresh table. So it is always insert and update in one batch.
We want to save the latest score to Cassandra. Any suggestion how we can achieve this??
Data in dataframe is by definition aren't ordered, and write into Cassandra will reflect this (inserts and updates are the same things in Cassandra) - data will be written in the random order and last write will win.
If you want to write only the latest value (with max score?) you will need to perform aggregations over your data, and use update output mode to write data to Cassandra (to write intermediate results of your streaming aggregations). Something like this:
caseClassDF.groupBy("name").agg(max("score")).write....
Hi I have 2 table in my hive in which from first table i m selecting data creating dataframe and saving that dataframe into another table in orc format.I have created both the tables in same database.
when I am saving this dataframe into 2nd table I'm getting table not found in database issue.and if i m not using any databasename then it always creating and saving my df in hive default database.can someone please guide me why its not taking userdefined database and always taking as default database?below is code which I m using,and also i m using HDP.
//creating hive session
val hive = com.hortonworks.spark.sql.hive.llap.HiveWarehouseBuilder.session(sparksession).build()
hive.setDatabase("dbname")
var a= "SELECT 'all columns' from dbname.tablename"
val a1=hive.executeQuery(a)
a1.write
.format("com.hortonworks.spark.sql.hive.llap.HiveWarehouseConnector")
.option("database", "dbname")
.option("table", "table_name")
.mode("Append")
.insertInto("dbname.table_name")
instead of insertInto(dbname.table_name) if I'm using insertInto(table_name) then its is saving dataframe in default database. But if I'm giving dbname.tablename then its showing table not found in database.
I also tried same using dbSession using.
val dbSession = HiveWarehouseSession.session(sparksession).build()
dbSession.setDatabase("dbname")
Note: My second table(target table where I'm writing data) is a partitioned and bucketed table.
// 2. partitionBy(...)
{ a1.write
.format("com.hortonworks.spark.sql.hive.llap.HiveWarehouseConnector")
.option("database", "dbname")
.option("table", "table_name")
.mode("Append")
.insertInto("dbname.table_name")
// My second table(target table where I'm writing data) is a partitioned and bucketed table. add .partitionBy(<list cols>)
}
I have a hive table created on top of s3 DATA in parquet format and partitioned by one column named eventdate.
1) When using HIVE QUERY, it returns data for a column named "headertime" which is in the schema of BOTH the table and the file.
select headertime from dbName.test_bug where eventdate=20180510 limit 10
2) FROM a scala NOTEBOOK , when directly loading a file from a particular partition that also works,
val session = org.apache.spark.sql.SparkSession.builder
.appName("searchRequests")
.enableHiveSupport()
.getOrCreate;
val searchRequest = session.sqlContext.read.parquet("s3n://bucketName/module/search_request/eventDate=20180510")
searchRequest.createOrReplaceTempView("SearchRequest")
val exploreDF = session.sql("select headertime from SearchRequest where SearchRequestHeaderDate='2018-05-10' limit 100")
exploreDF.show(20)
this also displays the values for the column "headertime"
3) But, when using spark sql to query directly the HIVE table as below,
val exploreDF = session.sql("select headertime from tier3_vsreenivasan.test_bug where eventdate=20180510 limit 100")
exploreDF.show(20)
it keeps returning null always.
I opened the parquet file and see that the column headertime is present with values, but not sure why spark SQL is not able to read the values for that column.
it will be helpful if someone can point out from where the spark SQL gets the schema? I was expecting it to behave similar to the HIVE QUERY
I want to overwrite specific partitions instead of all in spark. I am trying the following command:
df.write.orc('maprfs:///hdfs-base-path','overwrite',partitionBy='col4')
where df is dataframe having the incremental data to be overwritten.
hdfs-base-path contains the master data.
When I try the above command, it deletes all the partitions, and inserts those present in df at the hdfs path.
What my requirement is to overwrite only those partitions present in df at the specified hdfs path. Can someone please help me in this?
Finally! This is now a feature in Spark 2.3.0:
SPARK-20236
To use it, you need to set the spark.sql.sources.partitionOverwriteMode setting to dynamic, the dataset needs to be partitioned, and the write mode overwrite. Example:
spark.conf.set("spark.sql.sources.partitionOverwriteMode","dynamic")
data.write.mode("overwrite").insertInto("partitioned_table")
I recommend doing a repartition based on your partition column before writing, so you won't end up with 400 files per folder.
Before Spark 2.3.0, the best solution would be to launch SQL statements to delete those partitions and then write them with mode append.
This is a common problem. The only solution with Spark up to 2.0 is to write directly into the partition directory, e.g.,
df.write.mode(SaveMode.Overwrite).save("/root/path/to/data/partition_col=value")
If you are using Spark prior to 2.0, you'll need to stop Spark from emitting metadata files (because they will break automatic partition discovery) using:
sc.hadoopConfiguration.set("parquet.enable.summary-metadata", "false")
If you are using Spark prior to 1.6.2, you will also need to delete the _SUCCESS file in /root/path/to/data/partition_col=value or its presence will break automatic partition discovery. (I strongly recommend using 1.6.2 or later.)
You can get a few more details about how to manage large partitioned tables from my Spark Summit talk on Bulletproof Jobs.
spark.conf.set("spark.sql.sources.partitionOverwriteMode","dynamic")
data.toDF().write.mode("overwrite").format("parquet").partitionBy("date", "name").save("s3://path/to/somewhere")
This works for me on AWS Glue ETL jobs (Glue 1.0 - Spark 2.4 - Python 2)
Adding 'overwrite=True' parameter in the insertInto statement solves this:
hiveContext.setConf("hive.exec.dynamic.partition", "true")
hiveContext.setConf("hive.exec.dynamic.partition.mode", "nonstrict")
df.write.mode("overwrite").insertInto("database_name.partioned_table", overwrite=True)
By default overwrite=False. Changing it to True allows us to overwrite specific partitions contained in df and in the partioned_table. This helps us avoid overwriting the entire contents of the partioned_table with df.
Using Spark 1.6...
The HiveContext can simplify this process greatly. The key is that you must create the table in Hive first using a CREATE EXTERNAL TABLE statement with partitioning defined. For example:
# Hive SQL
CREATE EXTERNAL TABLE test
(name STRING)
PARTITIONED BY
(age INT)
STORED AS PARQUET
LOCATION 'hdfs:///tmp/tables/test'
From here, let's say you have a Dataframe with new records in it for a specific partition (or multiple partitions). You can use a HiveContext SQL statement to perform an INSERT OVERWRITE using this Dataframe, which will overwrite the table for only the partitions contained in the Dataframe:
# PySpark
hiveContext = HiveContext(sc)
update_dataframe.registerTempTable('update_dataframe')
hiveContext.sql("""INSERT OVERWRITE TABLE test PARTITION (age)
SELECT name, age
FROM update_dataframe""")
Note: update_dataframe in this example has a schema that matches that of the target test table.
One easy mistake to make with this approach is to skip the CREATE EXTERNAL TABLE step in Hive and just make the table using the Dataframe API's write methods. For Parquet-based tables in particular, the table will not be defined appropriately to support Hive's INSERT OVERWRITE... PARTITION function.
Hope this helps.
Tested this on Spark 2.3.1 with Scala.
Most of the answers above are writing to a Hive table. However, I wanted to write directly to disk, which has an external hive table on top of this folder.
First the required configuration
val sparkSession: SparkSession = SparkSession
.builder
.enableHiveSupport()
.config("spark.sql.sources.partitionOverwriteMode", "dynamic") // Required for overwriting ONLY the required partitioned folders, and not the entire root folder
.appName("spark_write_to_dynamic_partition_folders")
Usage here:
DataFrame
.write
.format("<required file format>")
.partitionBy("<partitioned column name>")
.mode(SaveMode.Overwrite) // This is required.
.save(s"<path_to_root_folder>")
I tried below approach to overwrite particular partition in HIVE table.
### load Data and check records
raw_df = spark.table("test.original")
raw_df.count()
lets say this table is partitioned based on column : **c_birth_year** and we would like to update the partition for year less than 1925
### Check data in few partitions.
sample = raw_df.filter(col("c_birth_year") <= 1925).select("c_customer_sk", "c_preferred_cust_flag")
print "Number of records: ", sample.count()
sample.show()
### Back-up the partitions before deletion
raw_df.filter(col("c_birth_year") <= 1925).write.saveAsTable("test.original_bkp", mode = "overwrite")
### UDF : To delete particular partition.
def delete_part(table, part):
qry = "ALTER TABLE " + table + " DROP IF EXISTS PARTITION (c_birth_year = " + str(part) + ")"
spark.sql(qry)
### Delete partitions
part_df = raw_df.filter(col("c_birth_year") <= 1925).select("c_birth_year").distinct()
part_list = part_df.rdd.map(lambda x : x[0]).collect()
table = "test.original"
for p in part_list:
delete_part(table, p)
### Do the required Changes to the columns in partitions
df = spark.table("test.original_bkp")
newdf = df.withColumn("c_preferred_cust_flag", lit("Y"))
newdf.select("c_customer_sk", "c_preferred_cust_flag").show()
### Write the Partitions back to Original table
newdf.write.insertInto("test.original")
### Verify data in Original table
orginial.filter(col("c_birth_year") <= 1925).select("c_customer_sk", "c_preferred_cust_flag").show()
Hope it helps.
Regards,
Neeraj
As jatin Wrote you can delete paritions from hive and from path and then append data
Since I was wasting too much time with it I added the following example for other spark users.
I used Scala with spark 2.2.1
import org.apache.hadoop.conf.Configuration
import org.apache.hadoop.fs.Path
import org.apache.spark.SparkConf
import org.apache.spark.sql.{Column, DataFrame, SaveMode, SparkSession}
case class DataExample(partition1: Int, partition2: String, someTest: String, id: Int)
object StackOverflowExample extends App {
//Prepare spark & Data
val sparkConf = new SparkConf()
sparkConf.setMaster(s"local[2]")
val spark = SparkSession.builder().config(sparkConf).getOrCreate()
val tableName = "my_table"
val partitions1 = List(1, 2)
val partitions2 = List("e1", "e2")
val partitionColumns = List("partition1", "partition2")
val myTablePath = "/tmp/some_example"
val someText = List("text1", "text2")
val ids = (0 until 5).toList
val listData = partitions1.flatMap(p1 => {
partitions2.flatMap(p2 => {
someText.flatMap(
text => {
ids.map(
id => DataExample(p1, p2, text, id)
)
}
)
}
)
})
val asDataFrame = spark.createDataFrame(listData)
//Delete path function
def deletePath(path: String, recursive: Boolean): Unit = {
val p = new Path(path)
val fs = p.getFileSystem(new Configuration())
fs.delete(p, recursive)
}
def tableOverwrite(df: DataFrame, partitions: List[String], path: String): Unit = {
if (spark.catalog.tableExists(tableName)) {
//clean partitions
val asColumns = partitions.map(c => new Column(c))
val relevantPartitions = df.select(asColumns: _*).distinct().collect()
val partitionToRemove = relevantPartitions.map(row => {
val fields = row.schema.fields
s"ALTER TABLE ${tableName} DROP IF EXISTS PARTITION " +
s"${fields.map(field => s"${field.name}='${row.getAs(field.name)}'").mkString("(", ",", ")")} PURGE"
})
val cleanFolders = relevantPartitions.map(partition => {
val fields = partition.schema.fields
path + fields.map(f => s"${f.name}=${partition.getAs(f.name)}").mkString("/")
})
println(s"Going to clean ${partitionToRemove.size} partitions")
partitionToRemove.foreach(partition => spark.sqlContext.sql(partition))
cleanFolders.foreach(partition => deletePath(partition, true))
}
asDataFrame.write
.options(Map("path" -> myTablePath))
.mode(SaveMode.Append)
.partitionBy(partitionColumns: _*)
.saveAsTable(tableName)
}
//Now test
tableOverwrite(asDataFrame, partitionColumns, tableName)
spark.sqlContext.sql(s"select * from $tableName").show(1000)
tableOverwrite(asDataFrame, partitionColumns, tableName)
import spark.implicits._
val asLocalSet = spark.sqlContext.sql(s"select * from $tableName").as[DataExample].collect().toSet
if (asLocalSet == listData.toSet) {
println("Overwrite is working !!!")
}
}
If you use DataFrame, possibly you want to use Hive table over data.
In this case you need just call method
df.write.mode(SaveMode.Overwrite).partitionBy("partition_col").insertInto(table_name)
It'll overwrite partitions that DataFrame contains.
There's not necessity to specify format (orc), because Spark will use Hive table format.
It works fine in Spark version 1.6
Instead of writing to the target table directly, i would suggest you create a temporary table like the target table and insert your data there.
CREATE TABLE tmpTbl LIKE trgtTbl LOCATION '<tmpLocation';
Once the table is created, you would write your data to the tmpLocation
df.write.mode("overwrite").partitionBy("p_col").orc(tmpLocation)
Then you would recover the table partition paths by executing:
MSCK REPAIR TABLE tmpTbl;
Get the partition paths by querying the Hive metadata like:
SHOW PARTITONS tmpTbl;
Delete these partitions from the trgtTbl and move the directories from tmpTbl to trgtTbl
I would suggest you doing clean-up and then writing new partitions with Append mode:
import scala.sys.process._
def deletePath(path: String): Unit = {
s"hdfs dfs -rm -r -skipTrash $path".!
}
df.select(partitionColumn).distinct.collect().foreach(p => {
val partition = p.getAs[String](partitionColumn)
deletePath(s"$path/$partitionColumn=$partition")
})
df.write.partitionBy(partitionColumn).mode(SaveMode.Append).orc(path)
This will delete only new partitions. After writing data run this command if you need to update metastore:
sparkSession.sql(s"MSCK REPAIR TABLE $db.$table")
Note: deletePath assumes that hfds command is available on your system.
My solution implies overwriting each specific partition starting from a spark dataframe. It skips the dropping partition part. I'm using pyspark>=3 and I'm writing on AWS s3:
def write_df_on_s3(df, s3_path, field, mode):
# get the list of unique field values
list_partitions = [x.asDict()[field] for x in df.select(field).distinct().collect()]
df_repartitioned = df.repartition(1,field)
for p in list_partitions:
# create dataframes by partition and send it to s3
df_to_send = df_repartitioned.where("{}='{}'".format(field,p))
df_to_send.write.mode(mode).parquet(s3_path+"/"+field+"={}/".format(p))
The arguments of this simple function are the df, the s3_path, the partition field, and the mode (overwrite or append). The first part gets the unique field values: it means that if I'm partitioning the df by daily, I get a list of all the dailies in the df. Then I'm repartition the df. Finally, I'm selecting the repartitioned df by each daily and I'm writing it on its specific partition path.
You can change the repartition integer by your needs.
You could do something like this to make the job reentrant (idempotent):
(tried this on spark 2.2)
# drop the partition
drop_query = "ALTER TABLE table_name DROP IF EXISTS PARTITION (partition_col='{val}')".format(val=target_partition)
print drop_query
spark.sql(drop_query)
# delete directory
dbutils.fs.rm(<partition_directoy>,recurse=True)
# Load the partition
df.write\
.partitionBy("partition_col")\
.saveAsTable(table_name, format = "parquet", mode = "append", path = <path to parquet>)
For >= Spark 2.3.0 :
spark.conf.set("spark.sql.sources.partitionOverwriteMode","dynamic")
data.write.insertInto("partitioned_table", overwrite=True)