Let's say that i have a scanned document and somehow i have managed to clear it from grid lines, extra character and the output is something like this.
I wanna convert it to digital format and plot it with matplotlib lets say.
How should i proceed on that? Any suggestions ?
I have tried to flatten the image and then plot it but the output was not even close.
Related
I am trying to isolate shadows from this image and remove them:
The reason why I am doing that is because shadow is problematic for my edge detection algorithm.
What should I do to remove the shadow? I haven't done this before, so I do not even know where to start from.
From the similar questions on SO I wasn't able to find anything to help me with my task.
I have the image in both: png and jpg format, so I am not even sure which format to use to start with.
That's a very interesting question. One option you can try is to divide the RGB values in the image by the grayscale intensity of the image. There is apparently another method explained here: https://onlinelibrary.wiley.com/doi/full/10.1002/col.21889.
I am trying to create multiple graphs that share the same legend.
I have found many ways to combine multiple graphs and it seems that ggarrange has the ability to create one shared legend for all that is supposed to be unique.
However I am having some problems when graphing since a few of the graphs do not have the same phyla (what defines the legend colors) present, but I would like them all to be the same colors throughout all of the graphs so the combined legend will have the correct colors.
For just one graph I would assign a color to the label manually like below
labs<-c("Arthropoda"="#FF66CC"
,"Cercozoa"="#FF6000")
and plot with the addition of scale_fill_manual(values=labs) and this seems to work
then I modified it so I could have portions of them italicized.
labsPhylum <-c('expression(paste(italic("Arthropoda")))'="#CC0000"
,'expression(paste(italic("Cercozoa")))'= "#FF6000"
,'expression (paste("unknown", ~italic("Eukaryota")))'= "#990000")`
However when I create a plot using ggplot and scale_color_manual() using the labsPhylum that I think should be italicized and colored I plot an empty graph with this warning so there is something vital I am not understanding here.
ggplot(data=sigtab_dil, aes(x=Species, y=log2FoldChange, color=Phylum))+
geom_point(size=2) +
scale_color_manual(values=labsPhylum)
Warning message:
Removed 9 rows containing missing values (geom_point).
Could someone please help me figure out where I am going wrong?
Thank you
Answered my own question
I realized I had to make separate vectors for breaks, labels, and values rather than combining them.
In short
colsPhylum <-c("Arthropoda"="#CC0000"
,"Cercozoa"= "#FF6000"
,"Chlorophyta"= "#CC9900"
labsPhylum <-c(expression(paste(italic("Arthropoda")))
,expression(paste(italic("Cercozoa")))
,expression(paste(italic("Chlorophyta ")))
breaksPhylum <-c("Arthropoda", "Cercozoa","Chlorophyta", "Choanozoa"
,"Ciliophora"
,"Cryptista"
I have a pyqtgraph imageitem with an associated histogram. I can change the colour of the image by selecting it from the histogram. What I want to do is save the name/number/something of this process so that I can later create the image and automatically load this colourmap using just this information.
How do I do this?
I can see the values of the colourmap in LUT but saving 512 x 3 values is a bit too much for me. I would really appreciate a better solution.
I found an alternative way to do this. When I click on the colourmap I record the selection in the program and can then use this whenever I want.
This is a follow up to my post three weeks ago here How do I use m_map in octave, without really being a nuissance to kind and busy people. My problem is simply how does one overlay a basemap on an octave contour plot. After interpolating my irregularly spaced data (works for both contour lines and filled contours) I plot with the code:
contour(xi, yi, obsi, cstart:cstep:cend)
colorbar;
xlabel('Longitude'),ylabel('Latitude')
title('Mean Rain Onset')
saveas(gcf,'rainzam.pdf')
And I get
I have downloaded several map formats: ne_50m_admin_0_countries.zip, the apparently obsolete m_map (with associated tbase.Z, gshhg-bin-2.3.2.zip), soa.7z, world-bounds.7z, gshhg-gmt-2.3.2.tar.gz, dcw-gmt-1.1.1.tar.gz.
My question is has anyone used any of these maps in octave or gnuplot, and how to? I would appreciate any assistance.
Basically you have to load those maps in octave, they represent borders or coastlines with two variables (x,y) which you can then add to your plot with
hold on
plot(x,y)
That's the easy part, the hard part is to load the maps. All of them have different formats, which means it is a completely different story how to load them. For instance, the ne_50m_admin_0_countries.zip has a dbf format. Either you convert it first to ascii text and load it easily with the load function of octave or you need the OI package (http://wiki.octave.org/IO_package), which in turn demands java (http://wiki.octave.org/Java_package). I don't think this is the easy way for a newbie, so I suggest to convert the maps individually to text: google for "convert dbf to csv", "convert dbf to text", "convert dbf to ascii", etc... Perhaps some of those maps can be even loaded with excel and then saved as text (csv), the important issue is to convert them to text!
If you want to draw physical coastlines, you may download them from this link
https://www.naturalearthdata.com/downloads/
Then, after the drawing of a contour map of your own datas, you may add the coastlines using the following commands:
pkg load mapping
hold on
h = shapedraw ('FileName.shp','r','linewidth',1)
My program generates 100 plots in GNUplot. I would like to concatenate them into a short little film, where each plot is ~0.1s. How can I do this most efficiently?
The least efficient method I can imagine would be to take a screen shot of each plot, somehow put the frames together, and then crop the movie. Thoughts?
Edit: By movie I mean either an animated GIF or a .mov or something like that. The main problem is getting the images from the plots.
Why use a screenshot? Simply set the terminal to GIF or PNG or whatever, then you get the images. Type "help set terminal" at the gnuplot prompt for a list of which terminals are available to you.
To make an animated gif, you can use Gifsicle or the Gimp.