How to get the index of an numpy.ndarray - python-3.x

I would to print the images on index i but I get an error of only integer scalar arrays can be converted to a scalar index. How can I convert I to int for each iteration
I have tried replacing images[i] with images[n] it worked but not the result I want.
c = [1 1 1 0 1 2 2 3 4 1 3]
#c here is list of cluster labels obtained after Affinity propagation
num_clusters = len(set(c))
images = os.listdir(DIR_NAME)
for n in range(num_clusters):
print("\n --- Images from cluster #%d ---" % n)
for i in np.argwhere(c == n):
if i != -1:
print("Image %s" % images[i])
I expect the output to be the name of the image, but I instead get TypeError: only integer scalar arrays can be converted to a scalar index that is because i is of type numpy.ndarray

Look at the doc of np.argwhere, it does not return a list of integers, but a list of lists
x = array([[0, 1, 2], [3, 4, 5]])
np.argwhere(x>1)
>>> array([[0, 2], [1, 0], [1, 1], [1, 2]])
y = np.array([0, 1, 2, 3, 4, 6, 7])
np.argwhere(y>3)
>>> array([[4], [5], [6]])
so without knowing what your c looks like, I assume your i will be of the form np.array([[3]]) instead of an integer, and therefore your code fails. Print i for testing and extract (e.g. i[0][0] and a test that it is non-empty) the desired index first before you do i != -1.
Meta
It is best practise to post a minimal reconstructable example, i.e. other people should be able to copy-paste the code and run it. Moreover, if you post at least a couple lines of the traceback (instead of just the error), we would be able to tell where exactly the error is happening.

Related

Issue with appending to an array

I cannot understand why the piece of code described below does what it does
import numpy as np
N = 2
A=[];
B=[];
for i in range(N):
B.append(i)
A.append(B)
The first time the for loop runs (for i =0), A = [[0]]. The second time the loop runs (for i =1), B = [0,1] and so I expect A = [[0],[0,1]], since we are appending B to A. However, when I print A, I get A = [[0,1],[0,1]]. Why do I not get the form I expect?
A and B here are pointing to objects in memory. So, if the object itself is modified in memory, all variables pointing to that object will show the updated value.
Now let's look at the code:
B.append(i) -> list B is appended with value of i.
A.append(B) -> list A is appended with reference of B. But the object itself referenced by B is getting modified in each iteration, and hence the most updated value of B is shown as each element of A at each level of iteration. If you run the loop for more iterations and print A, you'll notice this behavior clearly.
One way of overcoming this issue is appending A with a copy of B.
N = 4
A=[]
B=[]
for i in range(N):
B.append(i)
A.append(B.copy())
print(A)
# Output:
# [[0]]
# [[0], [0, 1]]
# [[0], [0, 1], [0, 1, 2]]
# [[0], [0, 1], [0, 1, 2], [0, 1, 2, 3]]

understanding the working principle of sorted function python [duplicate]

I have the following Python dict:
[(2, [3, 4, 5]), (3, [1, 0, 0, 0, 1]), (4, [-1]), (10, [1, 2, 3])]
Now I want to sort them on the basis of sum of values of the values of dictionary, so for the first key the sum of values is 3+4+5=12.
I have written the following code that does the job:
def myComparator(a,b):
print "Values(a,b): ",(a,b)
sum_a=sum(a[1])
sum_b=sum(b[1])
print sum_a,sum_b
print "Comparision Returns:",cmp(sum_a,sum_b)
return cmp(sum_a,sum_b)
items.sort(myComparator)
print items
This is what the output that I get after running above:
Values(a,b): ((3, [1, 0, 0, 0, 1]), (2, [3, 4, 5]))
2 12
Comparision Returns: -1
Values(a,b): ((4, [-1]), (3, [1, 0, 0, 0, 1]))
-1 2
Comparision Returns: -1
Values(a,b): ((10, [1, 2, 3]), (4, [-1]))
6 -1
Comparision Returns: 1
Values(a,b): ((10, [1, 2, 3]), (3, [1, 0, 0, 0, 1]))
6 2
Comparision Returns: 1
Values(a,b): ((10, [1, 2, 3]), (2, [3, 4, 5]))
6 12
Comparision Returns: -1
[(4, [-1]), (3, [1, 0, 0, 0, 1]), (10, [1, 2, 3]), (2, [3, 4, 5])]
Now I am unable to understand as to how the comparator is working, which two values are being passed and how many such comparisons would happen? Is it creating a sorted list of keys internally where it keeps track of each comparison made? Also the behavior seems to be very random. I am confused, any help would be appreciated.
The number and which comparisons are done is not documented and in fact, it can freely change from different implementations. The only guarantee is that if the comparison function makes sense the method will sort the list.
CPython uses the Timsort algorithm to sort lists, so what you see is the order in which that algorithm is performing the comparisons (if I'm not mistaken for very short lists Timsort just uses insertion sort)
Python is not keeping track of "keys". It just calls your comparison function every time a comparison is made. So your function can be called many more than len(items) times.
If you want to use keys you should use the key argument. In fact you could do:
items.sort(key=lambda x: sum(x[1]))
This will create the keys and then sort using the usual comparison operator on the keys. This is guaranteed to call the function passed by key only len(items) times.
Given that your list is:
[a,b,c,d]
The sequence of comparisons you are seeing is:
b < a # -1 true --> [b, a, c, d]
c < b # -1 true --> [c, b, a, d]
d < c # 1 false
d < b # 1 false
d < a # -1 true --> [c, b, d, a]
how the comparator is working
This is well documented:
Compare the two objects x and y and return an integer according to the outcome. The return value is negative if x < y, zero if x == y and strictly positive if x > y.
Instead of calling the cmp function you could have written:
sum_a=sum(a[1])
sum_b=sum(b[1])
if sum_a < sum_b:
return -1
elif sum_a == sum_b:
return 0
else:
return 1
which two values are being passed
From your print statements you can see the two values that are passed. Let's look at the first iteration:
((3, [1, 0, 0, 0, 1]), (2, [3, 4, 5]))
What you are printing here is a tuple (a, b), so the actual values passed into your comparison functions are
a = (3, [1, 0, 0, 0, 1])
b = (2, [3, 4, 5]))
By means of your function, you then compare the sum of the two lists in each tuple, which you denote sum_a and sum_b in your code.
and how many such comparisons would happen?
I guess what you are really asking: How does the sort work, by just calling a single function?
The short answer is: it uses the Timsort algorithm, and it calls the comparison function O(n * log n) times (note that the actual number of calls is c * n * log n, where c > 0).
To understand what is happening, picture yourself sorting a list of values, say v = [4,2,6,3]. If you go about this systematically, you might do this:
start at the first value, at index i = 0
compare v[i] with v[i+1]
If v[i+1] < v[i], swap them
increase i, repeat from 2 until i == len(v) - 2
start at 1 until no further swaps occurred
So you get, i =
0: 2 < 4 => [2, 4, 6, 3] (swap)
1: 6 < 4 => [2, 4, 6, 3] (no swap)
2: 3 < 6 => [2, 4, 3, 6] (swap)
Start again:
0: 4 < 2 => [2, 4, 3, 6] (no swap)
1: 3 < 4 => [2, 3, 4, 6] (swap)
2: 6 < 4 => [2, 3, 4, 6] (no swap)
Start again - there will be no further swaps, so stop. Your list is sorted. In this example we have run through the list 3 times, and there were 3 * 3 = 9 comparisons.
Obviously this is not very efficient -- the sort() method only calls your comparator function 5 times. The reason is that it employs a more efficient sort algorithm than the simple one explained above.
Also the behavior seems to be very random.
Note that the sequence of values passed to your comparator function is not, in general, defined. However, the sort function does all the necessary comparisons between any two values of the iterable it receives.
Is it creating a sorted list of keys internally where it keeps track of each comparison made?
No, it is not keeping a list of keys internally. Rather the sorting algorithm essentially iterates over the list you give it. In fact it builds subsets of lists to avoid doing too many comparisons - there is a nice visualization of how the sorting algorithm works at Visualising Sorting Algorithms: Python's timsort by Aldo Cortesi
Basically, for the simple list such as [2, 4, 6, 3, 1] and the complex list you provided, the sorting algorithms are the same.
The only differences are the complexity of elements in the list and the comparing scheme that how to compare any tow elements (e.g. myComparator you provided).
There is a good description for Python Sorting: https://wiki.python.org/moin/HowTo/Sorting
First, the cmp() function:
cmp(...)
cmp(x, y) -> integer
Return negative if x<y, zero if x==y, positive if x>y.
You are using this line: items.sort(myComparator) which is equivalent to saying: items.sort(-1) or items.sort(0) or items.sort(1)
Since you want to sort based on the sum of each tuples list, you could do this:
mylist = [(2, [3, 4, 5]), (3, [1, 0, 0, 0, 1]), (4, [-1]), (10, [1, 2, 3])]
sorted(mylist, key=lambda pair: sum(pair[1]))
What this is doing is, I think, exactly what you wanted. Sorting mylist based on the sum() of each tuples list

Shortcut for all the possible permutation of a set of numbers for m digits

I have been working on finite field. Suppose I have a prime number p=7. So I get a list q=[0,1,2,3,4,5,6]. Now I want all the possible permutation of the elements of set q for 7 places. For example [1,1,1,4,6,3,1] is one of the possible permutation. Is there any inbuilt command in python for doing that? Actually I am working with bigger field where P is 127 (p=127).
Those aren't permutations because elements are repeated, this looks more like a product.
you can use itertools.product on repeated q lists (here for 3 elements):
import itertools
q=[0,1,2] # or q = list(range(3))
for z in itertools.product(*(q,)*len(q)): # using arg unpacking like if it was (q,q,q)
z = list(z) # to convert as list
print(z)
prints:
[0, 0, 0]
[0, 0, 1]
[0, 0, 2]
[0, 1, 0]
[0, 1, 1]
[0, 1, 2]
...snip...
[2, 2, 0]
[2, 2, 1]
[2, 2, 2]
for p=3 it prints 3**3 = 27 values. If p=127 well... sounds not reasonable.

Select numbers from a list with given probability p

Lets say I have a list of numbers [1, 2, 3, ..., 100]. Now I want to select numbers from the list where each number is either accepted or rejected with a given probability 0 < p < 1 . The accepted numbers are then stored in a separate list. How can I do that?
The main problem is choosing the number with probability p. Is there an inbuilt function for that?
The value of p is given by the user.
You can use random.random() and a list comprehension:
import random
l = [1,2,3,4,5,6,7,8,9]
k = [x for x in l if random.random() > 0.23] # supply user input value here as 0.23
print(l)
print(k)
Output:
[1, 2, 3, 4, 5, 6, 7, 8, 9]
[2, 3, 4, 5, 6, 7]
to check each element of the list if it has a probability of > 0.23 of staying in the list.
Sidenote:
random.choices() has the ability to accept weights:
random.choices(population, weights=None, *, cum_weights=None, k=1)
but those only change the probability inside the given list for drawing one of the elements (absolute or relative weights are possible) - thats not working for "independent" probabilities though.

Returning the N largest values' indices in a multidimensional array (can find solutions for one dimension but not multi-dimension)

I have a numpy array X, and I'd like to return another array Y whose entries are the indices of the n largest values of X i.e. suppose I have:
a =np.array[[1, 3, 5], [4, 5 ,6], [9, 1, 7]]
then say, if I want the first 5 "maxs"'s indices-here 9, 7 , 6 , 5, 5 are the maxs, and their indices are:
b=np.array[[2, 0], [2 2], [ 2 1], [1 1], [0 , 2])
I've been able to find some solutions and make this work for a one dimensional array like
c=np.array[1, 2, 3, 4, 5, 6]:
def f(a,N):
return np.argsort(a)[::-1][:N]
But have not been able to generate something that works in more than one dimension. Thanks!
Approach #1
Get the argsort indices on its flattened version and select the last N indices. Then, get the corresponding row and column indices -
N = 5
idx = np.argsort(a.ravel())[-N:][::-1] #single slicing: `[:N-2:-1]`
topN_val = a.ravel()[idx]
row_col = np.c_[np.unravel_index(idx, a.shape)]
Sample run -
# Input array
In [39]: a = np.array([[1,3,5],[4,5,6],[9,1,7]])
In [40]: N = 5
...: idx = np.argsort(a.ravel())[-N:][::-1]
...: topN_val = a.ravel()[idx]
...: row_col = np.c_[np.unravel_index(idx, a.shape)]
...:
In [41]: topN_val
Out[41]: array([9, 7, 6, 5, 5])
In [42]: row_col
Out[42]:
array([[2, 0],
[2, 2],
[1, 2],
[1, 1],
[0, 2]])
Approach #2
For performance, we can use np.argpartition to get top N indices without keeping sorted order, like so -
idx0 = np.argpartition(a.ravel(), -N)[-N:]
To get the sorted order, we need one more round of argsort -
idx = idx0[a.ravel()[idx0].argsort()][::-1]

Resources