I'm very new to spark and cassandra, got one sample from github and tried to run the application from the below link
spark-on-cassandra-quickstart
After jar file generated, Tried executing with the below syntax
C:\Users\user\Desktop\softwares\spark-2.4.3-bin-hadoop2.7\spark-2.4.3-bin-hadoop2.7\bin>spark-submit --class com.github.boneill42.JavaDemo --master spark://localhost:7077
C:\Users\user\git\spark-on-cassandra-quickstart\target/spark-on-cassandra-0.0.1-SNAPSHOT-jar-with-dependencies.jar spark://localhost:7077 localhost
Below is the issue I'm facing
19/06/08 22:59:49 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
Exception in thread "main" java.lang.IllegalStateException: Cannot retrieve files with 'spark' scheme without an active SparkEnv.
at org.apache.spark.util.Utils$.doFetchFile(Utils.scala:690)
at org.apache.spark.deploy.DependencyUtils$.downloadFile(DependencyUtils.scala:137)
at org.apache.spark.deploy.SparkSubmit$$anonfun$prepareSubmitEnvironment$7.apply(SparkSubmit.scala:367)
at org.apache.spark.deploy.SparkSubmit$$anonfun$prepareSubmitEnvironment$7.apply(SparkSubmit.scala:367)
at scala.Option.map(Option.scala:146)
at org.apache.spark.deploy.SparkSubmit.prepareSubmitEnvironment(SparkSubmit.scala:366)
at org.apache.spark.deploy.SparkSubmit.submit(SparkSubmit.scala:143)
at org.apache.spark.deploy.SparkSubmit.doSubmit(SparkSubmit.scala:86)
at org.apache.spark.deploy.SparkSubmit$$anon$2.doSubmit(SparkSubmit.scala:924)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:933)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Please help me in resolving the issue
In your case, It seems you want to start in standalone mode
spark://HOST:PORT Connect to the given Spark standalone cluster master.
The port must be whichever one your master is configured to use, which is 7077 by default.
Do you start spark master and worker first ?
launch master
./sbin/start-master.sh
launch worker
./bin/spark-class org.apache.spark.deploy.worker.Worker spark://localhost:7077 -c 1 -m 512M
After start master and worker, then you can submit your job again.
Related
I have created an EMR cluster (emr-5.36.0) in AWS with the default sparks components (Spark 2.4.8, Hive 2.3.9).
I have installed Pyspark (3.3.0) on an EC2, in an python virtual environment.
From there, I would like to run "spark-submit" commands to the EMR cluster.
To test the command, I am using python the code at the bottom of this page
To configured the YARN_CONF_DIR environment variable on the EC2, I copied the yarn-site.xml file from /etc/hadoop/conf.empty/ on the EMR's master node to a folder on the EC2.
But now, on the EC2, when I try to run spark-submit, I get:
$ export YARN_CONF_DIR=/home/me/spark/
$ spark-submit --master yarn --deploy-mode cluster spark_test.py
Exception in thread "main" java.lang.NoClassDefFoundError: org/apache/hadoop/shaded/javax/ws/rs/core/NoContentException
at org.apache.hadoop.yarn.util.timeline.TimelineUtils.<clinit>(TimelineUtils.java:60)
at org.apache.hadoop.yarn.client.api.impl.YarnClientImpl.serviceInit(YarnClientImpl.java:200)
at org.apache.hadoop.service.AbstractService.init(AbstractService.java:164)
at org.apache.spark.deploy.yarn.Client.submitApplication(Client.scala:191)
at org.apache.spark.deploy.yarn.Client.run(Client.scala:1327)
at org.apache.spark.deploy.yarn.YarnClusterApplication.start(Client.scala:1764)
at org.apache.spark.deploy.SparkSubmit.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:958)
at org.apache.spark.deploy.SparkSubmit.doRunMain$1(SparkSubmit.scala:180)
at org.apache.spark.deploy.SparkSubmit.submit(SparkSubmit.scala:203)
at org.apache.spark.deploy.SparkSubmit.doSubmit(SparkSubmit.scala:90)
at org.apache.spark.deploy.SparkSubmit$$anon$2.doSubmit(SparkSubmit.scala:1046)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:1055)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala) Caused by: java.lang.ClassNotFoundException: org.apache.hadoop.shaded.javax.ws.rs.core.NoContentException
at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:581)
at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522)
... 13 more 22/07/18 18:36:25 INFO ShutdownHookManager: Shutdown hook called
And from here I am basically lost. I tried to google the error but I am still not clear what the error is about. Did I miss a step? An environment variable maybe?
Ultimately, I want to use the SparkSubmitOperator in Airflow, but I figured I should get the "native" command to work first before using the operator (which is just a wrapper).
If you do YARN_CONF_DIR=/etc/hadoop_files/ locally, the content of the folder hadoop_files needs to be the content of the EMR's /etc/hadoop/ folder, not /etc/hadoop/conf.empty/.
Trying to run a simple Spark application using Kubernetes master. But I don't get the intended output/processing, neither do I see any error messages. The final pod phase is 'Failed' and the error code is 101. The pod logs show the usual log4j warnings, but nothing else.
Running minikube v1.0.1 on windows (amd64) on my office laptop using hyperv. Have already increased the #cpus and memory on minikube VM to 3 and 4 GB as recommended.
Made sure that the applications run fine with Spark Standalone. The first application 'Hello' is supposed to print a 'Hello' message. The second application 'Calculate Monthly Revenue' is supposed to read data from Teradata over JDBC, aggregate it and write the result back to Teradata table over JDBC.
Also made sure that 'hello minikube' works fine.
In all the code snippets below, ... indicates portions omitted for brevity, >>> indicates command prompt.
>>> spark-submit --master k8s://https://153.65.225.219:8443 --deploy-mode cluster --name Hello --class Hello --conf spark.executor.instances=1 --conf spark.kubernetes.container.image=rahulvkulkarni/default:spark-td-run --conf spark.kubernetes.container.image.pullSecrets=regcred local://hello_2.12-0.1.0-SNAPSHOT.jar
log4j:WARN No appenders could be found for logger (io.fabric8.kubernetes.client.Config).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
Using Spark's default log4j profile: org/apache/spark/log4j-defaults.properties
19/05/20 16:59:09 INFO LoggingPodStatusWatcherImpl: State changed, new state:
pod name: hello-1558351748442-driver
...
phase: Pending
status: []
...
19/05/20 16:59:13 INFO LoggingPodStatusWatcherImpl: State changed, new state:
pod name: hello-1558351748442-driver
...
phase: Failed
status: [ContainerStatus(containerID=docker://464c9c0e23d543f20954d373218c9cefefc31107711cbd2ada4d93bb31ce4d80, image=rahulvkulkarni/default:spark-td-run, imageID=docker-pullable://rahulvkulkarni/default#sha256:1de9951c4ac9f0b5f26efa3949e1effa779b0605066f2043738402ce20e8179b, lastState=ContainerState(running=null, terminated=null, waiting=null, additionalProperties={}), name=spark-kubernetes-driver, ready=false, restartCount=0, state=ContainerState(running=null, terminated=ContainerStateTerminated(containerID=docker://464c9c0e23d543f20954d373218c9cefefc31107711cbd2ada4d93bb31ce4d80, exitCode=101, finishedAt=2019-05-17T18:26:41Z, message=null, reason=Error, signal=null, startedAt=2019-05-17T18:26:40Z, additionalProperties={}), waiting=null, additionalProperties={}), additionalProperties={})]
19/05/20 16:59:13 INFO LoggingPodStatusWatcherImpl: Container final statuses:
Container name: spark-kubernetes-driver
Container image: rahulvkulkarni/default:spark-td-run
Container state: Terminated
Exit code: 101
19/05/20 16:59:13 INFO Client: Application Hello finished.
...
>>> kubectl logs hello-1558351748442-driver
++ id -u
...
+ CMD=("$SPARK_HOME/bin/spark-submit" --conf "spark.driver.bindAddress=$SPARK_DRIVER_BIND_ADDRESS" --deploy-mode client "$#")
+ exec /sbin/tini -s -- /opt/spark/bin/spark-submit --conf spark.driver.bindAddress=172.17.0.5 --deploy-mode client --properties-file /opt/spark/conf/spark.properties --class Hello spark-internal
19/05/17 18:26:41 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
log4j:WARN No appenders could be found for logger (org.apache.spark.deploy.SparkSubmit$$anon$2).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
What does exit code 101 mean? How to find the actual error?
Then I tried to configure log4j for detailed logging as described in How to stop INFO messages displaying on spark console?. Renamed and used the log4j.properties template provided in the conf directory. But spark-submit is not able to find the log4j.properties file that I have already included in the docker build.
>>> spark-submit --master k8s://https://153.65.225.219:8443 --deploy-mode cluster --files /opt/spark/conf/log4j.properties --conf "spark.driver.extraJavaOptions=-Dlog4j.configuration=file:/opt/spark/conf/log4j.properties" --conf "spark.executor.extraJavaOptions=-Dlog4j.configuration=file:/opt/spark/conf/log4j.properties" --name "Calculate Monthly Revenue" --class mthRev --conf spark.executor.instances=1 --conf spark.kubernetes.container.image=rahulvkulkarni/default:spark-td-run --conf spark.kubernetes.container.image.pullSecrets=regcred local://mthrev_2.10-0.1-SNAPSHOT.jar <username> <password> <server name>
19/05/20 20:02:50 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
19/05/20 20:02:52 INFO LoggingPodStatusWatcherImpl: State changed, new state:
pod name: calculate-monthly-revenue-1558362771110-driver
...
Container name: spark-kubernetes-driver
Container image: rahulvkulkarni/default:spark-td-run
Container state: Terminated
Exit code: 1
>>> kubectl logs -c spark-kubernetes-driver calculate-monthly-revenue-1558362771110-driver
++ id -u
...
log4j:ERROR Could not read configuration file from URL [file:/opt/spark/conf/log4j.properties].
java.io.FileNotFoundException: /opt/spark/conf/log4j.properties (No such file or directory)
...
log4j:ERROR Ignoring configuration file [file:/opt/spark/conf/log4j.properties].
19/05/17 21:30:24 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
Exception in thread "main" java.lang.IllegalArgumentException: java.net.URISyntaxException: Expected scheme-specific part at index 2: C:
at org.apache.hadoop.fs.Path.initialize(Path.java:205)
at org.apache.hadoop.fs.Path.<init>(Path.java:171)
at org.apache.hadoop.fs.Path.<init>(Path.java:93)
at org.apache.hadoop.fs.Globber.glob(Globber.java:211)
at org.apache.hadoop.fs.FileSystem.globStatus(FileSystem.java:1657)
at org.apache.spark.deploy.DependencyUtils$.org$apache$spark$deploy$DependencyUtils$$resolveGlobPath(DependencyUtils.scala:192)
at org.apache.spark.deploy.DependencyUtils$$anonfun$resolveGlobPaths$2.apply(DependencyUtils.scala:147)
at org.apache.spark.deploy.DependencyUtils$$anonfun$resolveGlobPaths$2.apply(DependencyUtils.scala:145)
at scala.collection.TraversableLike$$anonfun$flatMap$1.apply(TraversableLike.scala:241)
at scala.collection.TraversableLike$$anonfun$flatMap$1.apply(TraversableLike.scala:241)
at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
at scala.collection.mutable.WrappedArray.foreach(WrappedArray.scala:35)
at scala.collection.TraversableLike$class.flatMap(TraversableLike.scala:241)
at scala.collection.AbstractTraversable.flatMap(Traversable.scala:104)
at org.apache.spark.deploy.DependencyUtils$.resolveGlobPaths(DependencyUtils.scala:145)
at org.apache.spark.deploy.SparkSubmit$$anonfun$prepareSubmitEnvironment$4.apply(SparkSubmit.scala:355)
at org.apache.spark.deploy.SparkSubmit$$anonfun$prepareSubmitEnvironment$4.apply(SparkSubmit.scala:355)
at scala.Option.map(Option.scala:146)
at org.apache.spark.deploy.SparkSubmit.prepareSubmitEnvironment(SparkSubmit.scala:355)
at org.apache.spark.deploy.SparkSubmit.submit(SparkSubmit.scala:143)
at org.apache.spark.deploy.SparkSubmit.doSubmit(SparkSubmit.scala:86)
at org.apache.spark.deploy.SparkSubmit$$anon$2.doSubmit(SparkSubmit.scala:924)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:933)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.net.URISyntaxException: Expected scheme-specific part at index 2: C:
at java.net.URI$Parser.fail(URI.java:2848)
at java.net.URI$Parser.failExpecting(URI.java:2854)
at java.net.URI$Parser.parse(URI.java:3057)
at java.net.URI.<init>(URI.java:746)
at org.apache.hadoop.fs.Path.initialize(Path.java:202)
... 23 more
[INFO tini (1)] Main child exited normally (with status '1')
I tried several variations of specifying the log4j.properties file: local file on my Windows laptop (file:///C$/Users//spark-2.4.3-bin-hadoop2.7/conf/log4j.properties and file:///C:/Users//spark-2.4.3-bin-hadoop2.7/conf/log4j.properties), local file in the Linux container (file:///opt/spark/conf/log4j.properties). But I keep getting the message:
log4j:ERROR Could not read configuration file from URL [file:/C$/Users/<my-username>/spark-2.4.3-bin-hadoop2.7/conf/log4j.properties].
The IllegalArgumentException exception went away when I tried the path without the colon (C:), i.e. either the Linux path or the Windows path with C$.
But I still don't get the desired output of my program and don't know if/what is the error!
There was a typo in the spark-submit command in the specification of the application jar. I was using only two forward slashes: local://hello_2.12-0.1.0-SNAPSHOT.jar. Hence, Spark was not able to locate it and (I think) was ignoring it silently and then had no work to do. Hence, there was no message. I'd expect it to give a warning at least.
Changed it to three slashes and it moved ahead:
local:///hello_2.12-0.1.0-SNAPSHOT.jar
I now have another issue related to Kubernetes RBAC, which I will solve separately. The log4j issue still remains, but is not a concern for me now.
I solve this by deploying config file to blobs
https://$(container_name).blob.core.windows.net/jars/log4jconfig1
and give him config to spark-submit
--conf "spark.driver.extraJavaOptions=-Dlog4j.configuration=https://<container_name>.blob.core.windows.net/jars/log4jconfig1" \
--conf "spark.executor.extraJavaOptions=-Dlog4j.configuration=https://<container_name>.blob.core.windows.net/jars/log4jconfig1" \
I have tried to run pio train command in HDInsight Spark cluster using following command
pio train -- --deploy-mode cluster --master yarn
But there is following error have been provided
2018-11-05 11:40:05 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
Exception in thread "main" java.io.IOException: No FileSystem for scheme: wasb
at org.apache.hadoop.fs.FileSystem.getFileSystemClass(FileSystem.java:2660)
at org.apache.hadoop.fs.FileSystem.createFileSystem(FileSystem.java:2667)
at org.apache.hadoop.fs.FileSystem.access$200(FileSystem.java:94)
at org.apache.hadoop.fs.FileSystem$Cache.getInternal(FileSystem.java:2703)
at org.apache.hadoop.fs.FileSystem$Cache.get(FileSystem.java:2685)
at org.apache.hadoop.fs.FileSystem.get(FileSystem.java:373)
at org.apache.hadoop.fs.FileSystem.get(FileSystem.java:172)
at org.apache.spark.deploy.yarn.Client$$anonfun$5.apply(Client.scala:121)
at org.apache.spark.deploy.yarn.Client$$anonfun$5.apply(Client.scala:121)
at scala.Option.getOrElse(Option.scala:121)
at org.apache.spark.deploy.yarn.Client.<init>(Client.scala:121)
at org.apache.spark.deploy.yarn.YarnClusterApplication.start(Client.scala:1520)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:894)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:198)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:228)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:137)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
2018-11-05 11:40:07 INFO ShutdownHookManager:54 - Shutdown hook called
I use following script to test connection and there is no issue, script successful connect and return available items from Azure Storage
hadoop fs -ls wasb://my_container_name#my_blob_account_name.blob.core.windows.net
Has anyone ideas with solution of the issue?
Had the same issues, where hadoop would support the wasb:// protocole, but not pio According to https://github.com/hning86/articles/blob/master/hadoopAndWasb.md
You have to use the hadoop-azure-2.7.1.jar and azure-storage-2.0.0.jar in your CLASSPATH
To solve this issue, you need to add the two jars to the CLASSPATH of pio itself.
With PredictionIO 0.13.1, according to /usr/local/pio/bin/compute-classpath.sh, this can be acheived by adding the jar to the subdirectory plugins
ls /usr/local/pio/plugins/azure-storage-2.0.0.jar
ls /usr/local/pio/plugins/hadoop-azure-2.7.1.jar
I'm trying to launch a cluster using AWS Cli. I use the following command:
aws emr create-cluster --name "Config1" --release-label emr-5.0.0 --applications Name=Spark --use-default-role --log-uri 's3://aws-logs-813591802533-us-west-2/elasticmapreduce/' --instance-groups InstanceGroupType=MASTER,InstanceCount=1,InstanceType=m1.medium InstanceGroupType=CORE,InstanceCount=2,InstanceType=m1.medium
The cluster is created successfully. Then I add this command:
aws emr add-steps --cluster-id ID_CLUSTER --region us-west-2 --steps Name=SparkSubmit,Jar="command-runner.jar",Args=[spark-submit,--deploy-mode,cluster,--master,yarn,--executor-memory,1G,--class,Traccia2014,s3://tracceale/params/scalaProgram.jar,s3://tracceale/params/configS3.txt,30,300,2,"s3a://tracceale/Tempi1"],ActionOnFailure=CONTINUE
After some time, the step failed. This is the LOG file:
17/02/22 11:00:07 INFO RMProxy: Connecting to ResourceManager at ip-172-31- 31-190.us-west-2.compute.internal/172.31.31.190:8032
17/02/22 11:00:08 INFO Client: Requesting a new application from cluster with 2 NodeManagers
17/02/22 11:00:08 INFO Client: Verifying our application has not requested
Exception in thread "main" org.apache.spark.SparkException: Application application_1487760984275_0001 finished with failed status
at org.apache.spark.deploy.yarn.Client.run(Client.scala:1132)
at org.apache.spark.deploy.yarn.Client$.main(Client.scala:1175)
at org.apache.spark.deploy.yarn.Client.main(Client.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:729)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:185)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:210)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:124)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
17/02/22 11:01:02 INFO ShutdownHookManager: Shutdown hook called
17/02/22 11:01:02 INFO ShutdownHookManager: Deleting directory /mnt/tmp/spark-27baeaa9-8b3a-4ae6-97d0-abc1d3762c86
Command exiting with ret '1'
Locally (on SandBox Hortonworks HDP 2.5) I run:
./spark-submit --class Traccia2014 --master local[*] --executor-memory 2G /usr/hdp/current/spark2-client/ScalaProjects/ScripRapportoBatch2.1/target/scala-2.11/traccia-22-ottobre_2.11-1.0.jar "/home/tracce/configHDFS.txt" 30 300 3
and everything works fine.
I've already read something related to my problem, but I can't figure it out.
UPDATE
Checked into Application Master, I get this error:
17/02/22 15:29:54 ERROR ApplicationMaster: User class threw exception: java.io.FileNotFoundException: s3:/tracceale/params/configS3.txt (No such file or directory)
at java.io.FileInputStream.open0(Native Method)
at java.io.FileInputStream.open(FileInputStream.java:195)
at java.io.FileInputStream.<init>(FileInputStream.java:138)
at scala.io.Source$.fromFile(Source.scala:91)
at scala.io.Source$.fromFile(Source.scala:76)
at scala.io.Source$.fromFile(Source.scala:54)
at Traccia2014$.main(Rapporto.scala:40)
at Traccia2014.main(Rapporto.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.yarn.ApplicationMaster$$anon$2.run(ApplicationMaster.scala:627)
17/02/22 15:29:55 INFO ApplicationMaster: Final app status: FAILED, exitCode: 15, (reason: User class threw exception: java.io.FileNotFoundException: s3:/tracceale/params/configS3.txt (No such file or directory))
I pass the path mentioned "s3://tracceale/params/configS3.txt" from S3 to the function 'fromFile' like this:
for(line <- scala.io.Source.fromFile(logFile).getLines())
How could I solve it? Thanks in advance.
Because you are using cluster deploy mode, the logs you have included are not useful at all. They just say that the application failed but not why it failed. To figure out why it failed, you at least need to look at the Application Master logs, since that is where the Spark driver runs in cluster deploy mode, and it will probably give a better hint as to why the application failed.
Since you have configured your cluster with a --log-uri, you will find the logs for the Application Master underneath s3://aws-logs-813591802533-us-west-2/elasticmapreduce/<CLUSTER ID>/containers/<YARN Application ID>/ where the YARN Application ID is (based on the logs you included above) application_1487760984275_0001, and the container ID should be something like container_1487760984275_0001_01_000001. (The first container for an application is the Application Master.)
What you have there is a URL to an object store, reachable from the Hadoop filesystem APIs, and a stack trace coming from java.io.File, which can't read it because it doesn't refer to anything in the local disk.
Use SparkContext.hadoopRDD() as the operation to convert the path into an RDD
There is a probability of file missing in the location, may be you can see it after ssh into EMR cluster but still the steps command wouldn't be able to figure out by itself and starts throwing that file not found exception.
In this scenario what I did is :
Step 1: Checked for the file existence in the project directory which we copied to EMR.
for example mine was in `//usr/local/project_folder/`
Step 2: Copy the script which you're expecting to run on the EMR.
for example I copied from `//usr/local/project_folder/script_name.sh` to `/home/hadoop/`
Step 3: Then executed the script from /home/hadoop/ by passing the absolute path to the command-runner.jar
command-runner.jar bash /home/hadoop/script_name.sh
Thus I found my script running. Hope this may be helpful to someone
I'm trying to run a spark job with yarn using:
./bin/spark-submit --class "KafkaToMaprfs" --master yarn --deploy-mode client /home/mapr/kafkaToMaprfs/target/scala-2.10/KafkaToMaprfs.jar
But facing this error:
/opt/mapr/hadoop/hadoop-2.7.0 17/01/03 11:19:26 WARN NativeCodeLoader:
Unable to load native-hadoop library for your platform... using
builtin-java classes where applicable 17/01/03 11:19:38 ERROR
SparkContext: Error initializing SparkContext.
org.apache.spark.SparkException: Yarn application has already ended!
It might have been killed or unable to launch application master.
at org.apache.spark.scheduler.cluster.YarnClientSchedulerBackend.waitForApplication(YarnClientSchedulerBackend.scala:124)
at org.apache.spark.scheduler.cluster.YarnClientSchedulerBackend.start(YarnClientSchedulerBackend.scala:64)
at org.apache.spark.scheduler.TaskSchedulerImpl.start(TaskSchedulerImpl.scala:144)
at org.apache.spark.SparkContext.(SparkContext.scala:530)
at KafkaToMaprfs$.main(KafkaToMaprfs.scala:61)
at KafkaToMaprfs.main(KafkaToMaprfs.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:752)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:181)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:206)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:121)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala) 17/01/03 11:19:39 WARN MetricsSystem: Stopping a MetricsSystem that is
not running Exception in thread "main"
org.apache.spark.SparkException: Yarn application has already ended!
It might have been killed or unable to launch application master.
at org.apache.spark.scheduler.cluster.YarnClientSchedulerBackend.waitForApplication(YarnClientSchedulerBackend.scala:124)
at org.apache.spark.scheduler.cluster.YarnClientSchedulerBackend.start(YarnClientSchedulerBackend.scala:64)
at org.apache.spark.scheduler.TaskSchedulerImpl.start(TaskSchedulerImpl.scala:144)
at org.apache.spark.SparkContext.(SparkContext.scala:530)
at KafkaToMaprfs$.main(KafkaToMaprfs.scala:61)
at KafkaToMaprfs.main(KafkaToMaprfs.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:752)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:181)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:206)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:121)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
I have a multi node cluster, i'm deploying the application from a remote node.
I'm using spark 1.6.1 and hadoop 2.7.x versions.
I didn't set the cluster, so I couldn't find where the mistake lies.
Can anyone please help me fix this?
In my case i'm using MapR distribution.And i didn't configure the environment.
So, when i dug down to the all the conf folders.I made some changes in the below files,
1. In Spark-env.sh,Make sure these values are set right.
export SPARK_LOG_DIR=
export SPARK_PID_DIR=
export HADOOP_HOME=
export HADOOP_CONF_DIR=
export JAVA_HOME=
export SPARK_SUBMIT_OPTIONS=
2. yarn-env.sh.
Make sure the yarn_conf_dir, and java_home are set with correct values.
3. In spark-defaults.conf
1.spark.driver.extraClassPath
2.set value for HADOOP_CONF_DIR
4. HADOOP_CONF_DIR and JAVA_HOME in $SPARK_HOME/conf/spark-env.sh
1.export HADOOP_CONF_DIR=/opt/mapr/hadoop/hadoop-2.7.0/etc/hadoop
2.export JAVA_HOME =
5.spark assembly jar
1.Copy the following JAR file from the local file system to a world-readable location on MapR-FS: Substitute your Spark version and
specific JAR file name in the command.
/opt/mapr/spark/spark-/lib/spark-assembly--hadoop-mapr-.jar
Now i'm able to run my spark application as YARN-CLIENT smoothly using spark-submit.
These are basic essentials to make spark connect with yarn.
Correct me if i missed any other things.