Cygwin new user *how to generate an executable? - cygwin

Question

I just installed Cygwin -I’m new user. I’m following instructions, but I’m stuck.
I need to generate an executable of the software I want to use, which was made in c++. When I type”make” in the right directory I have a list of errors and I don’t know what they mean. It may be something with my makefile?
Here are the instructions:
“The enclosed makefile should allow Match to be built on any GNU-based compiler platform as well as many others. You may need to modify the makefile if your compiler is not named "c++" or requires different command line options. ”
Here the errors:
$ make
c++ -O4 -c match.cc -o match.o -Wall -g
In file included from match.cc:37:0:
series.hh: In member function ‘void core::insert(const point&, int)’:
series.hh:161:5: error: ‘memmove’ was not declared in this scope
memmove(&data[i+1], &data[i], sizeof(point)*(size-i-1));
^~~~~~~
series.hh:161:5: note: suggested alternative: ‘wmemmove’
memmove(&data[i+1], &data[i], sizeof(point)*(size-i-1));
^~~~~~~
wmemmove
series.hh: In member function ‘void core::erase(int)’:
series.hh:166:5: error: ‘memmove’ was not declared in this scope
memmove(&data[i], &data[i+1], sizeof(point)*(size-i-1));
^~~~~~~
series.hh:166:5: note: suggested alternative: ‘wmemmove’
memmove(&data[i], &data[i+1], sizeof(point)*(size-i-1));
^~~~~~~
wmemmove
series.hh: In member function ‘int core::averageduplicates()’:
series.hh:214:2: error: ‘memmove’ was not declared in this scope
memmove(&data[i+1],&data[j],sizeof(point)*(size-j));
^~~~~~~
series.hh:214:2: note: suggested alternative: ‘wmemmove’
memmove(&data[i+1],&data[j],sizeof(point)*(size-j));
^~~~~~~
wmemmove
series.hh: At global scope:
series.hh:239:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void build_labelmap() throw(format_error) {
^~~~~
series.hh:253:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
int lookup_label(int label, float depth) throw(format_error) {
^~~~~
series.hh:410:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addtiept(vector<tiept> &tiemap, tiept &t) throw(format_error) {
^~~~~
series.hh:433:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void buildmaps(series &s1, series &s2) throw(format_error) {
^~~~~
series.hh:474:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
tiepts read_tiefile(string name, ostream &log) throw(format_error);
^~~~~
series.hh:488:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void apply_gaps(series &s) throw(format_error) {
^~~~~
series.hh:539:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
gaps read_gapfile(string name) throw(format_error);
^~~~~
make: *** [Makefile:10: match.o] Error 1
Here the makefile:
VERSION=2.3
all: match
%: %.o
c++ $^ -o $# $(LDFLAGS)
.cc.o:
# c++ -c $< -o $# -Wall -g $(CFLAGS)
c++ -O4 -c $< -o $# -Wall -g $(CFLAGS)
match: match.o series.o config.o normalize.o floatnan.o
match.o: match.cc config.hh series.hh normalize.hh floatnan.hh
series.o: series.cc series.hh floatnan.hh
config.o: config.cc config.hh floatnan.hh
normalize.o: normalize.cc normalize.hh series.hh floatnan.hh
floatnan.o: floatnan.cc floatnan.hh
clean:
rm -f *.o match *~ match.exe match.log *.new xmatch score_matrix
tar:
sed '/\S/ ! d;s/^/Match-${VERSION}\//' ../manifest > ../manifest.tmp
tar -cz -C ../.. -f ../match-${VERSION}.tgz -T ../manifest.tmp
check-manifest:
cd .. && find . -type f | sed 's/^.\///' | grep -v ,v | sort > manifest.tmp
sort ../manifest > ../manifest.tmp1
diff ../manifest.tmp1 ../manifest.tmp; true
pwd | grep 'Match-${VERSION}/' > /dev/null || (echo version mismatch; false)
Following an advice as per comment below, in the file "series.hh", I replaced "memmove" by "std::memmove".
I type "make" again, and now I get this:
$ make
c++ -O4 -c match.cc -o match.o -Wall -g
In file included from match.cc:37:0:
series.hh:9:1: error: expected unqualified-id before string constant
"//This program is distributed in the hope that it will be useful,"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/fstream:42:0,
from series.hh:36,
from match.cc:37:
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/x86_64-pc-cygwin/bits/basic_file.h:57:7: error: ‘__c_file’ does not name a type; did you mean ‘__basic_file’?
__c_file* _M_cfile;
^~~~~~~~
__basic_file
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/x86_64-pc-cygwin/bits/basic_file.h:63:28: error: expected ‘)’ before ‘*’ token
__basic_file(__c_lock* __lock = 0) throw ();
^
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/x86_64-pc-cygwin/bits/basic_file.h:66:41: error: ‘__c_lock’ has not been declared
__basic_file(__basic_file&& __rv, __c_lock* __lock = 0) noexcept
^~~~~~~~
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/x86_64-pc-cygwin/bits/basic_file.h:88:7: error: expected ‘;’ at end of member declaration
sys_open(__c_file* __file, ios_base::openmode);
^~~~~~~~
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/x86_64-pc-cygwin/bits/basic_file.h:88:24: error: expected ‘)’ before ‘*’ token
sys_open(__c_file* __file, ios_base::openmode);
^
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/x86_64-pc-cygwin/bits/basic_file.h:91:60: error: ‘std::__basic_file<char>* std::__basic_file<char>::sys_open(int, std::ios_base::openmode)’ conflicts with a previous declaration
sys_open(int __fd, ios_base::openmode __mode) throw ();
^
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/x86_64-pc-cygwin/bits/basic_file.h:88:16: note: previous declaration ‘std::__basic_file<char>* std::__basic_file<char>::sys_open’
sys_open(__c_file* __file, ios_base::openmode);
^~~~~~~~
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/x86_64-pc-cygwin/bits/basic_file.h:102:21: error: ‘__c_file’ does not name a type; did you mean ‘__basic_file’?
_GLIBCXX_PURE __c_file*
^~~~~~~~
__basic_file
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/x86_64-pc-cygwin/bits/basic_file.h: In constructor ‘std::__basic_file<char>::__basic_file(std::__basic_file<char>&&, int*)’:
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/x86_64-pc-cygwin/bits/basic_file.h:67:9: error: class ‘std::__basic_file<char>’ does not have any field named ‘_M_cfile’
: _M_cfile(__rv._M_cfile), _M_cfile_created(__rv._M_cfile_created)
^~~~~~~~
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/x86_64-pc-cygwin/bits/basic_file.h:67:23: error: ‘class std::__basic_file<char>’ has no member named ‘_M_cfile’; did you mean ‘__basic_file’?
: _M_cfile(__rv._M_cfile), _M_cfile_created(__rv._M_cfile_created)
^~~~~~~~
__basic_file
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/x86_64-pc-cygwin/bits/basic_file.h:69:7: error: ‘class std::__basic_file<char>’ has no member named ‘_M_cfile’; did you mean ‘__basic_file’?
__rv._M_cfile = nullptr;
^~~~~~~~
__basic_file
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/x86_64-pc-cygwin/bits/basic_file.h: In member function ‘void std::__basic_file<char>::swap(std::__basic_file<char>&)’:
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/x86_64-pc-cygwin/bits/basic_file.h:79:12: error: ‘_M_cfile’ was not declared in this scope
std::swap(_M_cfile, __f._M_cfile);
^~~~~~~~
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/x86_64-pc-cygwin/bits/basic_file.h:79:12: note: suggested alternative: ‘_Setfill’
std::swap(_M_cfile, __f._M_cfile);
^~~~~~~~
_Setfill
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/x86_64-pc-cygwin/bits/basic_file.h:79:26: error: ‘class std::__basic_file<char>’ has no member named ‘_M_cfile’; did you mean ‘__basic_file’?
std::swap(_M_cfile, __f._M_cfile);
^~~~~~~~
__basic_file
In file included from series.hh:36:0,
from match.cc:37:
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/fstream: At global scope:
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/fstream:107:7: error: ‘__c_lock’ does not name a type; did you mean ‘__c_locale’?
__c_lock _M_lock;
^~~~~~~~
__c_locale
In file included from /usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/fstream:1081:0,
from series.hh:36,
from match.cc:37:
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/bits/fstream.tcc: In constructor ‘std::basic_filebuf<_CharT, _Traits>::basic_filebuf()’:
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/bits/fstream.tcc:80:43: error: class ‘std::basic_filebuf<_CharT, _Traits>’ does not have any field named ‘_M_lock’
basic_filebuf() : __streambuf_type(), _M_lock(), _M_file(&_M_lock),
^~~~~~~
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/bits/fstream.tcc:80:63: error: ‘_M_lock’ was not declared in this scope
basic_filebuf() : __streambuf_type(), _M_lock(), _M_file(&_M_lock),
^~~~~~~
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/bits/fstream.tcc:80:63: note: suggested alternative: ‘_M_seek’
basic_filebuf() : __streambuf_type(), _M_lock(), _M_file(&_M_lock),
^~~~~~~
_M_seek
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/bits/fstream.tcc: In constructor ‘std::basic_filebuf<_CharT, _Traits>::basic_filebuf(std::basic_filebuf<_CharT, _Traits>&&)’:
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/bits/fstream.tcc:97:5: error: class ‘std::basic_filebuf<_CharT, _Traits>’ does not have any field named ‘_M_lock’
_M_lock(), _M_file(std::move(__rhs._M_file), &_M_lock),
^~~~~~~
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/bits/fstream.tcc:97:51: error: ‘_M_lock’ was not declared in this scope
_M_lock(), _M_file(std::move(__rhs._M_file), &_M_lock),
^~~~~~~
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/include/c++/bits/fstream.tcc:97:51: note: suggested alternative: ‘_M_seek’
_M_lock(), _M_file(std::move(__rhs._M_file), &_M_lock),
^~~~~~~
_M_seek
In file included from match.cc:37:0:
series.hh: At global scope:
series.hh:43:1: error: expected unqualified-id before string constant
"#include ""assert.h"""
^~~~~~~~~~~
series.hh:62:1: error: expected unqualified-id before string constant
" float x, y;"
^~~~~~~~~~~~~~~
series.hh:67:1: error: expected unqualified-id before string constant
"static float intervalmap(float i1b, float i1e, float i2b, "
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
series.hh:70:1: error: expected declaration before ‘}’ token
}
^
make: *** [Makefile:10: match.o] Error 1
What should I do?
Alp