In spark batch jobs I usually have a JSON datasource written to a file and can use corrupt column features of the DataFrame reader to write the corrupt data out in a seperate location, and another reader to write the valid data both from the same job. ( The data is written as parquet )
But in Spark Structred Streaming I'm first reading the stream in via kafka as a string and then using from_json to get my DataFrame. Then from_json uses JsonToStructs which uses a FailFast mode in the parser and does not return the unparsed string to a column in the DataFrame. (see Note in Ref) Then how can I write corrupt data that doesn't match my schema and possibly invalid JSON to another location using SSS?
Finally in the batch job the same job can write both dataframes. But Spark Structured Streaming requires special handling for multiple sinks. Then in Spark 2.3.1 (my current version) we should include details about how to write both corrupt and invalid streams properly...
Ref: https://jaceklaskowski.gitbooks.io/mastering-spark-sql/spark-sql-Expression-JsonToStructs.html
val rawKafkaDataFrame=spark
.readStream
.format("kafka")
.option("kafka.bootstrap.servers", config.broker)
.option("kafka.ssl.truststore.location", path.toString)
.option("kafka.ssl.truststore.password", config.pass)
.option("kafka.ssl.truststore.type", "JKS")
.option("kafka.security.protocol", "SSL")
.option("subscribe", config.topic)
.option("startingOffsets", "earliest")
.load()
val jsonDataFrame = rawKafkaDataFrame.select(col("value").cast("string"))
// does not provide a corrupt column or way to work with corrupt
jsonDataFrame.select(from_json(col("value"), schema)).select("jsontostructs(value).*")
When you convert to json from string, and if it is not be able to parse with the schema provided, it will return null. You can filter the null values and select the string. Something like this.
val jsonDF = jsonDataFrame.withColumn("json", from_json(col("value"), schema))
val invalidJsonDF = jsonDF.filter(col("json").isNull).select("value")
I was just trying to figure out the _corrupt_record equivalent for structured streaming as well. Here's what I came up with; hopefully it gets you closer to what you're looking for:
// add a status column to partition our output by
// optional: only keep the unparsed json if it was corrupt
// writes up to 2 subdirs: 'out.par/status=OK' and 'out.par/status=CORRUPT'
// additional status codes for validation of nested fields could be added in similar fashion
df.withColumn("struct", from_json($"value", schema))
.withColumn("status", when($"struct".isNull, lit("CORRUPT")).otherwise(lit("OK")))
.withColumn("value", when($"status" <=> lit("CORRUPT"), $"value"))
.write
.partitionBy("status")
.parquet("out.par")
Related
I have a Spark Structured Streaming application. The application receives data from kafka, and should use these values as a parameter to process data from a cassandra database. My question is how do I use the data that is in the input dataframe (kafka), as "where" parameters in cassandra "select" without taking the error below:
Exception in thread "main" org.apache.spark.sql.AnalysisException: Queries with streaming sources must be executed with writeStream.start();
This is my df input:
val df = spark
.readStream
.format("kafka")
.options(
Map("kafka.bootstrap.servers"-> kafka_bootstrap,
"subscribe" -> kafka_topic,
"startingOffsets"-> "latest",
"fetchOffset.numRetries"-> "5",
"kafka.group.id"-> groupId
))
.load()
I get this error whenever I try to store the dataframe values in a variable to use as a parameter.
This is the method I created to try to convert the data into variables. With that the spark give the error that I mentioned earlier:
def processData(messageToProcess: DataFrame): DataFrame = {
val messageDS: Dataset[Message] = messageToProcess.as[Message]
val listData: Array[Message] = messageDS.collect()
listData.foreach(x => println(x.country))
val mensagem = messageToProcess
mensagem
}
When you need to use data in Kafka to query data in Cassandra, then such operation is a typical join between two datasets - you don't need to call .collect to find entries, you just do the join. And it's quite typical thing - to enrich data in Kafka with data from the external dataset, and Cassandra provides low-latency operations.
Your code could look as following (you'll need to configure so-called DirectJoin, see link below):
import spark.implicits._
import org.apache.spark.sql.cassandra._
val df = spark.readStream.format("kafka")
.options(Map(...)).load()
... decode data in Kafka into columns
val cassdata = spark.read.cassandraFormat("table", "keyspace").load
val joined = df.join(cassdata, cassdata("pk") === df("some_column"))
val processed = ... process joined data
val query = processed.writeStream.....output data somewhere...start()
query.awaitTermination()
I have detailed blog post on how to perform efficient joins with data in Cassandra.
As the error message suggest, you have to use writeStream.start() in order to execute a Structured Streaming query.
You can't use the same actions you use for batch dataframes (like .collect(), .show() or .count()) on streaming dataframes, see the Unsupported Operations section of the Spark Structured Streaming documentation.
In your case, you are trying to use messageDS.collect() on a streaming dataset, which is not allowed. To achieve this goal you can use a foreachBatch output sink to collect the rows you need at each microbatch:
streamingDF.writeStream.foreachBatch { (microBatchDf: DataFrame, batchId: Long) =>
// Now microBatchDf is no longer a streaming dataframe
// you can check with microBatchDf.isStreaming
val messageDS: Dataset[Message] = microBatchDf.as[Message]
val listData: Array[Message] = messageDS.collect()
listData.foreach(x => println(x.country))
// ...
}
In Structured Streaming, will the checkpoints keep track of which data has already been processed from a Delta Table?
def fetch_data_streaming(source_table: str):
print("Fetching now")
streamingInputDF = (
spark
.readStream
.format("delta")
.option("maxBytesPerTrigger",1024)
.table(source_table)
.where("measurementId IN (1351,1350)")
.where("year >= '2021'")
)
query = (
streamingInputDF
.writeStream
.outputMode("append")
.option("checkpointLocation", "/streaming_checkpoints/5")
.foreachBatch(customWriter)
.start()
.awaitTermination()
)
return query
def customWriter(batchDF,batchId):
print(batchId)
print(batchDF.count())
batchDF.show(10)
length = batchDF.count()
print("batchId,batch size:",batchId,length)
If I change the where clause in the streamingInputDF to add more measurentId, the structured streaming job doesn't always acknowledge the change and fetch the new data values. It continues to run as if nothing has changed, whereas at times it starts fetching new values.
Isn't the checkpoint supposed to identify the change?
Edit: Schema of delta table:
col_name
data_type
measurementId
int
year
int
time
timestamp
q
smallint
v
string
"In structured streaming, will the checkpoints will keep track of which data has already been processed?"
Yes, the Structured Streaming job will store the read version of the Delta table in its checkpoint files to avoid producing duplicates.
Within the checkpoint directory in the folder "offsets", you will see that Spark stored the progress per batchId. For example it will look like below:
v1
{"batchWatermarkMs":0,"batchTimestampMs":1619695775288,"conf":[...]}
{"sourceVersion":1,"reservoirId":"d910a260-6aa2-4a7c-9f5c-1be3164127c0","reservoirVersion":2,"index":2,"isStartingVersion":true}
Here, the important part is the "reservoirVersion":2 which tells you that the streaming job has consumed all data from the Delta Table as of version 2.
Re-starting your Structured Streaming query with an additional filter condition will therefore not be applied to historic records but only to those that were added to the Delta Table after version 2.
In order to see this behavior in action you can use below code and analyse the content in the checkpoint files.
val deltaPath = "file:///tmp/delta/table"
val checkpointLocation = "file:///tmp/checkpoint/"
// run the following two lines once
val deltaDf = Seq(("1", "foo1"), ("2", "foo2"), ("3", "foo2")).toDF("id", "value")
deltaDf.write.format("delta").mode("append").save(deltaPath)
// run this code for the first time, then add filter condition, then run again
val query = spark.readStream
.format("delta")
.load(deltaPath)
.filter(col("id").isin("1")) // in the second run add "2"
.writeStream
.format("console")
.outputMode("append")
.option("checkpointLocation", checkpointLocation)
.start()
query.awaitTermination()
Now, if you append some more data to the Delta table while the streaming query is shut down and then restart is with the new filter condition it will be applied to the new data.
I have a dataframe generated from Spark which I want to use for writeStream and also want to save in a database.
I have the following code:
output = (
spark_event_df
.writeStream
.outputMode('update')
.foreach(writerClass(**job_config_data))
.trigger(processingTime="2 seconds")
.start()
)
output.awaitTermination()
As I am using foreach(), writerClass gets a Row and I can not convert it into a dictionary in python.
How can I get a python datatype(preferably dictionary) from the Row in my writerClass so that I can manipulate that according to my needs and save into database?
If you're just looking to save to a database as part of your stream, you could do that using foreachBatch and the built-in JDBC writer. Just do your transformations to shape your data according to the desired output schema, then:
def writeBatch(input, batch_id):
(input
.write
.format("jdbc")
.option("url", url)
.option("dbtable", tbl)
.mode("append")
.save())
output = (spark_event_df
.writeStream
.foreachBatch(writeBatch)
.start())
output.awaitTermination()
If you absolutely need custom logic for writing to your database, that is not supported by the built-in JDBC writer, then you should use the DataFrame foreachPartition method to write your rows in bulk rather than one at a time. If you're using this method, then you can convert the Row objects into a dict by just calling asDict
I have a usecase in which I am consuming data from Kafka using spark structured streaming. I have multiple topics to subscribe and based on the topic name the dataframe should be dumped to a defined location(different location for different topics). I saw if this can be solved using some kind of split/filter function in spark dataframe but could not find any.
As of now I am only subscribed to one topic and I am using my own written method to dump the data into a location in parquet's format. Here is the code I am currently using :
def save_as_parquet(cast_dataframe: DataFrame,output_path:
String,checkpointLocation: String): Unit = {
val query = cast_dataframe.writeStream
.format("parquet")
.option("failOnDataLoss",true)
.option("path",output_path)
.option("checkpointLocation",checkpointLocation)
.start()
.awaitTermination()
}
When I will be subscribed to different topics, then this cast_dataframe will also have values from different topics. I wish to dump the data from a topic to only the location it is assigned location. How can this be done ?
As explained in the official documentation Dataset to be written might contain optional topic column, which can be used for message routing:
* The topic column is required if the “topic” configuration option is not specified.
The value column is the only required option. If a key column is not specified then a null valued key column will be automatically added (see Kafka semantics on how null valued key values are handled). If a topic column exists then its value is used as the topic when writing the given row to Kafka, unless the “topic” configuration option is set i.e., the “topic” configuration option overrides the topic column.
According to the documentation each Row from Kafka source has the following schema:
Column
Type
key
binary
value
binary
topic
string
...
...
Assuming you are reading from multiple topics using the source option
val kafkaInputDf = spark.readStream.format("kafka").[...]
.option("subscribe", "topic1, topic2, topic3")
.start()
.selectExpr("CAST(key AS STRING)", "CAST(value AS STRING)", "topic")
you can then apply a filter to on the column topic to split the data accordingly:
val df1 = kafkaInputDf.filter(col("topic") === "topic1")
val df2 = kafkaInputDf.filter(col("topic") === "topic2")
val df3 = kafkaInputDf.filter(col("topic") === "topic3")
Then you can sink those three streaming Dataframes df1, df2 and df3 into their required sinks. As this will create three in parallel running streaming queries it is important that each writeStream get its own checkpoint location.
I have a DataSet[Row] where each row is JSON string. I want to just print the JSON stream or count the JSON stream per batch.
Here is my code so far
val ds = sparkSession.readStream()
.format("kafka")
.option("kafka.bootstrap.servers",bootstrapServers"))
.option("subscribe", topicName)
.option("checkpointLocation", hdfsCheckPointDir)
.load();
val ds1 = ds.select(from_json(col("value").cast("string"), schema) as 'payload)
val ds2 = ds1.select($"payload.info")
val query = ds2.writeStream.outputMode("append").queryName("table").format("memory").start()
query.awaitTermination()
select * from table; -- don't see anything and there are no errors. However when I run my Kafka consumer separately (independent ofSpark I can see the data)
My question really is what do I need to do just print the data I am receiving from Kafka using Structured Streaming? The messages in Kafka are JSON encoded strings so I am converting JSON encoded strings to some struct and eventually to a dataset. I am using Spark 2.1.0
val ds1 = ds.select(from_json(col("value").cast("string"), schema) as payload).select($"payload.*")
That will print your data on the console.
ds1.writeStream.format("console").option("truncate", "false").start().awaitTermination()
Always use something like awaitTermination() or thread.Sleep(time in seconds) in these type of situations.