Python worker exited unexpectedly exception - when importing psycopyg within mapPartitions - apache-spark

I am new to spark. So bear with me.
Here is what I am trying to do:
I read entries from CSV file and check if the entry is present in the database and insert if not present. I don't want to use rdd.write.jdbc option because i think it will write entire dataframe.
I am using mapPartition and trying to initialise the postgres connection with psycopg2 library as follows:
def save_to_db(records):
import psycopg2
from psycopg2.extensions import AsIs
url = 'postgres://postgres:#127.0.0.1:5432/spark_learn'
conn = psycopg2.connect(url)
conn.autocommit = True
cursor = conn.cursor()
for record in records:
columns = record.keys()
values = [record[key] for key in columns]
cursor.execute("INSERT INTO heroes (%s) VALUES %s", (AsIs(','.join(columns)), tuple(values)))
return records
But I am getting the error as follows:
Caused by: org.apache.spark.SparkException: Python worker exited unexpectedly (crashed)
at org.apache.spark.api.python.BasePythonRunner$ReaderIterator$$anonfun$3.applyOrElse(PythonRunner.scala:486)
at org.apache.spark.api.python.BasePythonRunner$ReaderIterator$$anonfun$3.applyOrElse(PythonRunner.scala:475)
at scala.runtime.AbstractPartialFunction.apply(AbstractPartialFunction.scala:36)
at org.apache.spark.api.python.PythonRunner$$anon$1.read(PythonRunner.scala:593)
at org.apache.spark.api.python.PythonRunner$$anon$1.read(PythonRunner.scala:571)
at org.apache.spark.api.python.BasePythonRunner$ReaderIterator.hasNext(PythonRunner.scala:406)
at org.apache.spark.InterruptibleIterator.hasNext(InterruptibleIterator.scala:37)
at scala.collection.Iterator$class.foreach(Iterator.scala:891)
at org.apache.spark.InterruptibleIterator.foreach(InterruptibleIterator.scala:28)
at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48)
at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310)
at org.apache.spark.InterruptibleIterator.to(InterruptibleIterator.scala:28)
at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302)
at org.apache.spark.InterruptibleIterator.toBuffer(InterruptibleIterator.scala:28)
at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289)
at org.apache.spark.InterruptibleIterator.toArray(InterruptibleIterator.scala:28)
at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$13.apply(RDD.scala:945)
at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$13.apply(RDD.scala:945)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:121)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:402)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:408)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
... 1 more
Caused by: java.io.EOFException
at java.io.DataInputStream.readInt(DataInputStream.java:392)
at org.apache.spark.api.python.PythonRunner$$anon$1.read(PythonRunner.scala:578)
... 26 more
Pls help me in this.

Related

Py4JJavaError: An error occurred while calling z:org.apache.spark.api.python.PythonRDD.runJob. : org.apache.spark.SparkException

from pyspark import SparkConf,SparkContext
conf=SparkConf().setMaster("local").setAppName("my App")
sc=SparkContext(conf=conf)
lines = sc.textFile("C:/Users/user/Downloads/learning-spark-master/learning-spark-master/README.md")
pythonLines = lines.filter(lambda line: "Python" in line)
pythonLines
pythonLines.first()
I am new to pyspark. I was trying to execute above code and I am getting following error after executing pythonLines(). Any help would be appreciated.
Py4JJavaError: An error occurred while calling z:org.apache.spark.api.python.PythonRDD.runJob.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 3.0 failed 1 times, most recent failure: Lost task 0.0 in stage 3.0 (TID 3) (LAPTOP-GAN836TE.fios-router.home executor driver): org.apache.spark.SparkException: Python worker failed to connect back.
at org.apache.spark.api.python.PythonWorkerFactory.createSimpleWorker(PythonWorkerFactory.scala:182)
at org.apache.spark.api.python.PythonWorkerFactory.create(PythonWorkerFactory.scala:107)
at org.apache.spark.SparkEnv.createPythonWorker(SparkEnv.scala:119)
at org.apache.spark.api.python.BasePythonRunner.compute(PythonRunner.scala:145)
at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:65)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:373)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:337)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:131)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:497)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1439)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:500)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.net.SocketTimeoutException: Accept timed out
at java.net.DualStackPlainSocketImpl.waitForNewConnection(Native Method)
at java.net.DualStackPlainSocketImpl.socketAccept(DualStackPlainSocketImpl.java:131)
at java.net.AbstractPlainSocketImpl.accept(AbstractPlainSocketImpl.java:535)
at java.net.PlainSocketImpl.accept(PlainSocketImpl.java:189)
at java.net.ServerSocket.implAccept(ServerSocket.java:545)
at java.net.ServerSocket.accept(ServerSocket.java:513)
at org.apache.spark.api.python.PythonWorkerFactory.createSimpleWorker(PythonWorkerFactory.scala:174)
... 14 more
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.failJobAndIndependentStages(DAGScheduler.scala:2253)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2(DAGScheduler.scala:2202)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2$adapted(DAGScheduler.scala:2201)
at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62)
at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:2201)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1(DAGScheduler.scala:1078)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1$adapted(DAGScheduler.scala:1078)
at scala.Option.foreach(Option.scala:407)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:1078)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2440)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2382)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2371)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:868)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2202)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2223)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2242)
at org.apache.spark.api.python.PythonRDD$.runJob(PythonRDD.scala:166)
at org.apache.spark.api.python.PythonRDD.runJob(PythonRDD.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:282)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:238)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.SparkException: Python worker failed to connect back.
at org.apache.spark.api.python.PythonWorkerFactory.createSimpleWorker(PythonWorkerFactory.scala:182)
at org.apache.spark.api.python.PythonWorkerFactory.create(PythonWorkerFactory.scala:107)
at org.apache.spark.SparkEnv.createPythonWorker(SparkEnv.scala:119)
at org.apache.spark.api.python.BasePythonRunner.compute(PythonRunner.scala:145)
at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:65)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:373)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:337)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:131)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:497)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1439)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:500)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
... 1 more
Caused by: java.net.SocketTimeoutException: Accept timed out
at java.net.DualStackPlainSocketImpl.waitForNewConnection(Native Method)
at java.net.DualStackPlainSocketImpl.socketAccept(DualStackPlainSocketImpl.java:131)
at java.net.AbstractPlainSocketImpl.accept(AbstractPlainSocketImpl.java:535)
at java.net.PlainSocketImpl.accept(PlainSocketImpl.java:189)
at java.net.ServerSocket.implAccept(ServerSocket.java:545)
at java.net.ServerSocket.accept(ServerSocket.java:513)
at org.apache.spark.api.python.PythonWorkerFactory.createSimpleWorker(PythonWorkerFactory.scala:174)
... 14 more
Based on the code , am not seeing anything wrong . Still you can analysis this issue based on the following data related .
Make sure 4th line lines rdd has the data based on the collect().
make your after filter line #5 , you are not getting empty rdd by using of isEmpty(). ref : link
Same code I have ran for your reference as sample.
I ran into the same error in Chapter 7 in the "Data Science on GCP" book by author Valliappa Lakshmanan.
The author points this out in one of the logistic_regression.ipynb cells by writing "if this is empty, change the shard you are using", but it's not clear that above error could be an indication of that.
Following their tip, simply change
inputs = 'gs://{}/flights/tzcorr/all_flights-00000-*'.format(BUCKET)
to something like (note the 1 instead of the 0 to select a different shard)
inputs = 'gs://{}/flights/tzcorr/all_flights-00001-*'.format(BUCKET)
You'd have to make an equivalent change further down to not test the model on the same data as you trained it on.

Filter, map problem in DataSets using Spark and Jupyter Notebook

I am doing DataFrames and DataSets exercises with spark in Jupyter and I have run into a problem. When carrying out a filter for those houses with a price higher than $ 120,000 I find an error that only gives me when I run it through Jupyter with Spylon-Kernel (version 0.4.1) and it is that I don't lets apply the filter function receiving a house as a parameter while if I do it from the spark-shell terminal it works and I don't understand why. Attached images and code:
Code
case class House (id: Int, city: String, price: Int)
val houseDF = Seq(House(1,"Paris", 120000),
House(2,"Paris", 150000), House(3,"Berlin", 138000),
House(4,"Berlin", 160000), House(5,"Madrid", 110000),
House(6,"Madrid", 125000), House(7,"Paris", 140000),
House(8,"Madrid", 150000), House(9,"Berlin", 125000),
House(10,"Berlin", 132000)).toDF
val houseDS = houseDF.as[House]
houseDS.filter( houseDS("price") > 120000).show(5) // This work :)
houseDS.filter(house => house.price > 120000).show(5) // This not work :(
Error:
org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 0.0 failed 1 times, most recent failure: Lost task 0.0 in stage 0.0 (TID 0, 192.168.1.20, executor driver): java.lang.ClassCastException: $iw cannot be cast to $iw
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:729)
at org.apache.spark.sql.execution.SparkPlan.$anonfun$getByteArrayRdd$1(SparkPlan.scala:340)
at org.apache.spark.rdd.RDD.$anonfun$mapPartitionsInternal$2(RDD.scala:872)
at org.apache.spark.rdd.RDD.$anonfun$mapPartitionsInternal$2$adapted(RDD.scala:872)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:349)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:313)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:127)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.failJobAndIndependentStages(DAGScheduler.scala:2059)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2(DAGScheduler.scala:2008)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2$adapted(DAGScheduler.scala:2007)
at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62)
at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:2007)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1(DAGScheduler.scala:973)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1$adapted(DAGScheduler.scala:973)
at scala.Option.foreach(Option.scala:407)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:973)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2239)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2188)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2177)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:775)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2099)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2120)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2139)
at org.apache.spark.sql.execution.SparkPlan.executeTake(SparkPlan.scala:467)
at org.apache.spark.sql.execution.SparkPlan.executeTake(SparkPlan.scala:420)
at org.apache.spark.sql.execution.CollectLimitExec.executeCollect(limit.scala:47)
at org.apache.spark.sql.Dataset.collectFromPlan(Dataset.scala:3627)
at org.apache.spark.sql.Dataset.$anonfun$head$1(Dataset.scala:2697)
at org.apache.spark.sql.Dataset.$anonfun$withAction$1(Dataset.scala:3618)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withNewExecutionId$5(SQLExecution.scala:100)
at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:160)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withNewExecutionId$1(SQLExecution.scala:87)
at org.apache.spark.sql.SparkSession.withActive(SparkSession.scala:764)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:64)
at org.apache.spark.sql.Dataset.withAction(Dataset.scala:3616)
at org.apache.spark.sql.Dataset.head(Dataset.scala:2697)
at org.apache.spark.sql.Dataset.take(Dataset.scala:2904)
at org.apache.spark.sql.Dataset.getRows(Dataset.scala:300)
at org.apache.spark.sql.Dataset.showString(Dataset.scala:337)
at org.apache.spark.sql.Dataset.show(Dataset.scala:824)
at org.apache.spark.sql.Dataset.show(Dataset.scala:783)
... 37 elided
Caused by: java.lang.ClassCastException: $iw cannot be cast to $iw
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:729)
at org.apache.spark.sql.execution.SparkPlan.$anonfun$getByteArrayRdd$1(SparkPlan.scala:340)
at org.apache.spark.rdd.RDD.$anonfun$mapPartitionsInternal$2(RDD.scala:872)
at org.apache.spark.rdd.RDD.$anonfun$mapPartitionsInternal$2$adapted(RDD.scala:872)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:349)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:313)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:127)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
... 1 more
Screenshots
I don't know if it will be something from Jupyter, something from the Kernel (Spylon) or no idea.
Thank you very much to all!!
I've seen similar problems with regards to case classes that are defined directly in a cell.
try replacing the cell that defines House with:
object X {
case class House (id: Int, city: String, price: Int)
}
import X._
Alternatively, if you define House in a separate jar, and add that jar to the CLASSPATH, I think it will also work

Unable to read Parquet file with Spark, java.lang.ClassCastException: [B cannot be cast to java.lang.Long

I am trying to read parquet files from S3 with Spark. I tried both using Hive table or directly reading from S3.
Here is the stacktrace:
org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 83.0 failed 4 times, most recent failure: Lost task 0.3 in stage 83.0 (TID 17419, ip-10-23-0-40.ec2.internal, executor 82): org.apache.spark.sql.execution.QueryExecutionException: Encounter error while reading parquet files. One possible cause: Parquet column cannot be converted in the corresponding files. Details:
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:226)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:130)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:291)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:283)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:836)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:836)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:123)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.parquet.io.ParquetDecodingException: Can not read value at 1 in block 0 in file s3://path_to_my_file.snappy.parquet
at org.apache.parquet.hadoop.InternalParquetRecordReader.nextKeyValue(InternalParquetRecordReader.java:251)
at org.apache.parquet.hadoop.ParquetRecordReader.nextKeyValue(ParquetRecordReader.java:207)
at org.apache.spark.sql.execution.datasources.RecordReaderIterator.hasNext(RecordReaderIterator.scala:39)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:130)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:214)
... 21 more
Caused by: java.lang.ClassCastException: [B cannot be cast to java.lang.Long
at scala.runtime.BoxesRunTime.unboxToLong(BoxesRunTime.java:105)
at org.apache.spark.sql.catalyst.expressions.MutableLong.update(SpecificInternalRow.scala:148)
at org.apache.spark.sql.catalyst.expressions.SpecificInternalRow.update(SpecificInternalRow.scala:228)
at org.apache.spark.sql.execution.datasources.parquet.ParquetRowConverter$RowUpdater.set(ParquetRowConverter.scala:164)
at org.apache.spark.sql.execution.datasources.parquet.ParquetPrimitiveConverter.addBinary(ParquetRowConverter.scala:90)
at org.apache.parquet.column.impl.ColumnReaderImpl$2$6.writeValue(ColumnReaderImpl.java:317)
at org.apache.parquet.column.impl.ColumnReaderImpl.writeCurrentValueToConverter(ColumnReaderImpl.java:367)
at org.apache.parquet.io.RecordReaderImplementation.read(RecordReaderImplementation.java:406)
at org.apache.parquet.hadoop.InternalParquetRecordReader.nextKeyValue(InternalParquetRecordReader.java:226)
... 26 more
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:2041)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:2029)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:2028)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:2028)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:966)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:966)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:966)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2262)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2211)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2200)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:777)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2061)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2082)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2101)
at org.apache.spark.sql.execution.SparkPlan.executeTake(SparkPlan.scala:401)
at org.apache.spark.sql.execution.CollectLimitExec.executeCollect(limit.scala:38)
at org.apache.spark.sql.Dataset.org$apache$spark$sql$Dataset$$collectFromPlan(Dataset.scala:3389)
at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:2550)
at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:2550)
at org.apache.spark.sql.Dataset$$anonfun$52.apply(Dataset.scala:3370)
at org.apache.spark.sql.execution.SQLExecution$$anonfun$withNewExecutionId$1.apply(SQLExecution.scala:78)
at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:125)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:73)
at org.apache.spark.sql.Dataset.withAction(Dataset.scala:3369)
at org.apache.spark.sql.Dataset.head(Dataset.scala:2550)
at org.apache.spark.sql.Dataset.take(Dataset.scala:2764)
at org.apache.spark.sql.Dataset.getRows(Dataset.scala:254)
at org.apache.spark.sql.Dataset.showString(Dataset.scala:291)
at org.apache.spark.sql.Dataset.show(Dataset.scala:751)
at org.apache.spark.sql.Dataset.show(Dataset.scala:710)
at org.apache.spark.sql.Dataset.show(Dataset.scala:719)
... 49 elided
Caused by: org.apache.spark.sql.execution.QueryExecutionException: Encounter error while reading parquet files. One possible cause: Parquet column cannot be converted in the corresponding files. Details:
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:226)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:130)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:291)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:283)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:836)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:836)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:123)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
... 3 more
Caused by: org.apache.parquet.io.ParquetDecodingException: Can not read value at 1 in block 0 in file s3://path_to_my_file.snappy.parquet
at org.apache.parquet.hadoop.InternalParquetRecordReader.nextKeyValue(InternalParquetRecordReader.java:251)
at org.apache.parquet.hadoop.ParquetRecordReader.nextKeyValue(ParquetRecordReader.java:207)
at org.apache.spark.sql.execution.datasources.RecordReaderIterator.hasNext(RecordReaderIterator.scala:39)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:130)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:214)
... 21 more
Caused by: java.lang.ClassCastException: [B cannot be cast to java.lang.Long
at scala.runtime.BoxesRunTime.unboxToLong(BoxesRunTime.java:105)
at org.apache.spark.sql.catalyst.expressions.MutableLong.update(SpecificInternalRow.scala:148)
at org.apache.spark.sql.catalyst.expressions.SpecificInternalRow.update(SpecificInternalRow.scala:228)
at org.apache.spark.sql.execution.datasources.parquet.ParquetRowConverter$RowUpdater.set(ParquetRowConverter.scala:164)
at org.apache.spark.sql.execution.datasources.parquet.ParquetPrimitiveConverter.addBinary(ParquetRowConverter.scala:90)
at org.apache.parquet.column.impl.ColumnReaderImpl$2$6.writeValue(ColumnReaderImpl.java:317)
at org.apache.parquet.column.impl.ColumnReaderImpl.writeCurrentValueToConverter(ColumnReaderImpl.java:367)
at org.apache.parquet.io.RecordReaderImplementation.read(RecordReaderImplementation.java:406)
at org.apache.parquet.hadoop.InternalParquetRecordReader.nextKeyValue(InternalParquetRecordReader.java:226)
... 26 more
The strange thing when I read whole bucket with all partitions the error appears, but when I try to read just the file which resulted the issue, it is fine. The column has Long type. When I drop that column, everything works fine.
Any ideas?

Spark Graph : NullPointerException when do collectEdges and lookup

I have a code to analyze a graph to find all paths given starting vertex
I get NPE when try to find edges by dest vertex
Here is the full code : https://github.com/ssemichael/spark-play/blob/master/src/main/scala/org/heng/spark/graph/FindPath.scala
here is the method and the problem line is at //find neighbors
def findPath(graph: Graph[Long, String], result: Array[Path], currentLevel: RDD[Path]): Array[Path] = {
if (currentLevel.isEmpty()) {
return result
}
//find neighbors
val neighbors = currentLevel.map(t => PathForFilter(t.src, graph.collectEdges(EdgeDirection.Out).lookup(t.dest), t.path))
//if no more neighbors, put paths to result
val collected = neighbors.filter(t => t.dest.length == 0).map(t => Path(t.src, t.path.last, t.path))
val newResult = result ++ collected.collect()
//otherwise, find next level neighbors
val nextLevel = neighbors.filter(t => t.dest.length > 0 && !t.path.contains(t.dest(0)(0).dstId) ).map(
t => Path(t.src, t.dest(0)(0).dstId, t.path :+ t.dest(0)(0).dstId))
findPath(graph, newResult, nextLevel)
}
this is the stack trace
ERROR 2019-10-28 14:57:29,409 2478 org.apache.spark.executor.Executor [Executor task launch worker for task 24] Exception in task 3.0 in stage 8.0 (TID 24)
java.lang.NullPointerException
at org.apache.spark.graphx.impl.GraphImpl.aggregateMessagesWithActiveSet(GraphImpl.scala:194)
at org.apache.spark.graphx.Graph.aggregateMessages(Graph.scala:378)
at org.apache.spark.graphx.GraphOps.collectEdges(GraphOps.scala:178)
at org.heng.spark.graph.FindPath$$anonfun$1.apply(FindPath.scala:28)
at org.heng.spark.graph.FindPath$$anonfun$1.apply(FindPath.scala:28)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:463)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at scala.collection.Iterator$class.foreach(Iterator.scala:891)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1334)
at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48)
at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310)
at scala.collection.AbstractIterator.to(Iterator.scala:1334)
at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302)
at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1334)
at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289)
at scala.collection.AbstractIterator.toArray(Iterator.scala:1334)
at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$13.apply(RDD.scala:945)
at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$13.apply(RDD.scala:945)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:121)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)

Kafka Offsets out of range

I'm writing a program in scala for spark streaming connection with kafka and I'm getting the following error:
18/02/19 12:31:39 ERROR Executor: Exception in task 0.0 in stage 3.0 (TID 39)
org.apache.kafka.clients.consumer.OffsetOutOfRangeException: Offsets out of range with no configured reset policy for partitions: {prensa4-0=744}
at org.apache.kafka.clients.consumer.internals.Fetcher.parseFetchedData(Fetcher.java:588)
at org.apache.kafka.clients.consumer.internals.Fetcher.fetchedRecords(Fetcher.java:354)
at org.apache.kafka.clients.consumer.KafkaConsumer.pollOnce(KafkaConsumer.java:1000)
at org.apache.kafka.clients.consumer.KafkaConsumer.poll(KafkaConsumer.java:938)
at org.apache.spark.streaming.kafka010.CachedKafkaConsumer.poll(CachedKafkaConsumer.scala:99)
at org.apache.spark.streaming.kafka010.CachedKafkaConsumer.get(CachedKafkaConsumer.scala:70)
at org.apache.spark.streaming.kafka010.KafkaRDD$KafkaRDDIterator.next(KafkaRDD.scala:223)
at org.apache.spark.streaming.kafka010.KafkaRDD$KafkaRDDIterator.next(KafkaRDD.scala:189)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:409)
at scala.collection.Iterator$$anon$10.next(Iterator.scala:393)
at scala.collection.Iterator$class.foreach(Iterator.scala:893)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1336)
at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48)
at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310)
at scala.collection.AbstractIterator.to(Iterator.scala:1336)
at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302)
at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1336)
at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289)
at scala.collection.AbstractIterator.toArray(Iterator.scala:1336)
at org.apache.spark.rdd.RDD$$anonfun$take$1$$anonfun$29.apply(RDD.scala:1354)
at org.apache.spark.rdd.RDD$$anonfun$take$1$$anonfun$29.apply(RDD.scala:1354)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2069)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2069)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:108)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:338)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
18/02/19 12:31:39 ERROR TaskSetManager: Task 0 in stage 3.0 failed 1 times; aborting job
org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 3.0 failed 1 times, most recent failure: Lost task 0.0 in stage 3.0 (TID 39, localhost, executor driver): org.apache.kafka.clients.consumer.OffsetOutOfRangeException: Offsets out of range with no configured reset policy for partitions: {prensa4-0=744}
at org.apache.kafka.clients.consumer.internals.Fetcher.parseFetchedData(Fetcher.java:588)
at org.apache.kafka.clients.consumer.internals.Fetcher.fetchedRecords(Fetcher.java:354)
at org.apache.kafka.clients.consumer.KafkaConsumer.pollOnce(KafkaConsumer.java:1000)
at org.apache.kafka.clients.consumer.KafkaConsumer.poll(KafkaConsumer.java:938)
at org.apache.spark.streaming.kafka010.CachedKafkaConsumer.poll(CachedKafkaConsumer.scala:99)
at org.apache.spark.streaming.kafka010.CachedKafkaConsumer.get(CachedKafkaConsumer.scala:70)
at org.apache.spark.streaming.kafka010.KafkaRDD$KafkaRDDIterator.next(KafkaRDD.scala:223)
at org.apache.spark.streaming.kafka010.KafkaRDD$KafkaRDDIterator.next(KafkaRDD.scala:189)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:409)
at scala.collection.Iterator$$anon$10.next(Iterator.scala:393)
at scala.collection.Iterator$class.foreach(Iterator.scala:893)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1336)
at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48)
at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310)
at scala.collection.AbstractIterator.to(Iterator.scala:1336)
at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302)
at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1336)
at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289)
at scala.collection.AbstractIterator.toArray(Iterator.scala:1336)
at org.apache.spark.rdd.RDD$$anonfun$take$1$$anonfun$29.apply(RDD.scala:1354)
at org.apache.spark.rdd.RDD$$anonfun$take$1$$anonfun$29.apply(RDD.scala:1354)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2069)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2069)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:108)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:338)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1517)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1505)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1504)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1504)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:814)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:814)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:814)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1732)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1687)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1676)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:630)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2029)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2050)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2069)
at org.apache.spark.rdd.RDD$$anonfun$take$1.apply(RDD.scala:1354)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:362)
at org.apache.spark.rdd.RDD.take(RDD.scala:1327)
at org.apache.spark.rdd.RDD$$anonfun$isEmpty$1.apply$mcZ$sp(RDD.scala:1462)
at org.apache.spark.rdd.RDD$$anonfun$isEmpty$1.apply(RDD.scala:1462)
at org.apache.spark.rdd.RDD$$anonfun$isEmpty$1.apply(RDD.scala:1462)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:362)
at org.apache.spark.rdd.RDD.isEmpty(RDD.scala:1461)
at itcl.adquisicionDatos$$anonfun$main$3.apply(adquisicionDatos-gonvarri.scala:212)
at itcl.adquisicionDatos$$anonfun$main$3.apply(adquisicionDatos-gonvarri.scala:200)
at org.apache.spark.streaming.dstream.DStream$$anonfun$foreachRDD$1$$anonfun$apply$mcV$sp$3.apply(DStream.scala:628)
at org.apache.spark.streaming.dstream.DStream$$anonfun$foreachRDD$1$$anonfun$apply$mcV$sp$3.apply(DStream.scala:628)
at org.apache.spark.streaming.dstream.ForEachDStream$$anonfun$1$$anonfun$apply$mcV$sp$1.apply$mcV$sp(ForEachDStream.scala:51)
at org.apache.spark.streaming.dstream.ForEachDStream$$anonfun$1$$anonfun$apply$mcV$sp$1.apply(ForEachDStream.scala:51)
at org.apache.spark.streaming.dstream.ForEachDStream$$anonfun$1$$anonfun$apply$mcV$sp$1.apply(ForEachDStream.scala:51)
at org.apache.spark.streaming.dstream.DStream.createRDDWithLocalProperties(DStream.scala:416)
at org.apache.spark.streaming.dstream.ForEachDStream$$anonfun$1.apply$mcV$sp(ForEachDStream.scala:50)
at org.apache.spark.streaming.dstream.ForEachDStream$$anonfun$1.apply(ForEachDStream.scala:50)
at org.apache.spark.streaming.dstream.ForEachDStream$$anonfun$1.apply(ForEachDStream.scala:50)
at scala.util.Try$.apply(Try.scala:192)
at org.apache.spark.streaming.scheduler.Job.run(Job.scala:39)
at org.apache.spark.streaming.scheduler.JobScheduler$JobHandler$$anonfun$run$1.apply$mcV$sp(JobScheduler.scala:257)
at org.apache.spark.streaming.scheduler.JobScheduler$JobHandler$$anonfun$run$1.apply(JobScheduler.scala:257)
at org.apache.spark.streaming.scheduler.JobScheduler$JobHandler$$anonfun$run$1.apply(JobScheduler.scala:257)
at scala.util.DynamicVariable.withValue(DynamicVariable.scala:58)
at org.apache.spark.streaming.scheduler.JobScheduler$JobHandler.run(JobScheduler.scala:256)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.kafka.clients.consumer.OffsetOutOfRangeException: Offsets out of range with no configured reset policy for partitions: {prensa4-0=744}
at org.apache.kafka.clients.consumer.internals.Fetcher.parseFetchedData(Fetcher.java:588)
at org.apache.kafka.clients.consumer.internals.Fetcher.fetchedRecords(Fetcher.java:354)
at org.apache.kafka.clients.consumer.KafkaConsumer.pollOnce(KafkaConsumer.java:1000)
at org.apache.kafka.clients.consumer.KafkaConsumer.poll(KafkaConsumer.java:938)
at org.apache.spark.streaming.kafka010.CachedKafkaConsumer.poll(CachedKafkaConsumer.scala:99)
at org.apache.spark.streaming.kafka010.CachedKafkaConsumer.get(CachedKafkaConsumer.scala:70)
at org.apache.spark.streaming.kafka010.KafkaRDD$KafkaRDDIterator.next(KafkaRDD.scala:223)
at org.apache.spark.streaming.kafka010.KafkaRDD$KafkaRDDIterator.next(KafkaRDD.scala:189)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:409)
at scala.collection.Iterator$$anon$10.next(Iterator.scala:393)
at scala.collection.Iterator$class.foreach(Iterator.scala:893)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1336)
at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48)
at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310)
at scala.collection.AbstractIterator.to(Iterator.scala:1336)
at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302)
at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1336)
at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289)
at scala.collection.AbstractIterator.toArray(Iterator.scala:1336)
at org.apache.spark.rdd.RDD$$anonfun$take$1$$anonfun$29.apply(RDD.scala:1354)
at org.apache.spark.rdd.RDD$$anonfun$take$1$$anonfun$29.apply(RDD.scala:1354)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2069)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2069)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:108)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:338)
... 3 more
enable.auto.commit is True and auto.offset.reset is "latest".
Some time ago it was working fine, I tried to turn auto commit to false and use manual offset commit but I didn't manage to make it works so I return to this configurations but I'm also getting this error, so I figure it's not due to manual committing.
Some help about?
Thanks.
We had the same issue. For us the problem was:
master creates tasks like "read from that topic-partition form offset X
to offset Y" and passes that tasks to executors.
executor receives tasks and start consuming data form topic-partition. At that time, due to topic configuration (time or size retention) offset X become unavailable. KafkaConsumer that is created for consuming messages doesn't have offset reset policy.
result is exception you see
solution: you need to tune
your kafka topic config
speed of your spark job (i.e. decrease batch time, increase number of executors).

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