knitr: setting 'out.height' does suddenly not keep aspect ratio - graphics

by using knitr::include_graphics with option out.height='50px' in a rmarkdown ioslides presentation the aspect ratio is not kept on my machine. Does anyone has an idea how to solve this problem?
Interestingly, this morning it worked. But not after I installed the
R packages ggsn, ggmap, plotKML. Later I removed them, but the problem remains.
I use: Ubuntu 16.04.4, R version 3.4.4, current rmarkdown
Minimal example is:
---
title: "Untitled"
author: "Me"
date: "May 24, 2018"
output: ioslides_presentation
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo =T)
```
## R Markdown
setting out.height does NOT keep aspect ratio
```{r, out.height='50px', dpi=200}
knitr::include_graphics("rect_circ.png")
```
setting out.width keeps aspect ratio
```{r, out.width='50px', dpi=200}
knitr::include_graphics("rect_circ.png")
```

I guess you installed the png package by chance (it may be a dependency of the packages you mentioned). When png is available, include_graphics() will try to set the chunk option out.width to match your dpi setting. In your case, you set the out.height option, which leads to the problem of a distorted aspect ratio (the automatically calculated width is 96, and your manual height is 50).
If you have a desired figure size in the output, you may call
knitr::include_graphics("rect_circ.png", dpi = NA)
to avoid the automatic adjustment of out.width. If you have a desired DPI, you should leave out out.height, e.g.,
```{r}
knitr::include_graphics("rect_circ.png", dpi = 200)
``

Within in my ioslides_presentation I created a row of jpg-graphics. For this to look nice I needed to set the out.height option, so that the pictures build a rectangular block. Usually this worked:
```{r, out.height="200px",dpi=200}
maps=c("map_1.jpg","map_2.jpg","map_3.jpg")
knitr::include_graphics(maps)
```
But with the png package installed the aspect ratio of the pictures was not kept. Applying the above mentioned changes, the chunk which workes looks like this:
```{r, out.height="200px"}
maps=c("map_anthroms_full.jpg","map_anthroms_rangelands.jpg")
knitr::include_graphics(maps, dpi=NA)
```
Note: Setting a resolution within include_graphics() or ```{r, ...} produces the same error.

Related

Vuforia video playback with fixed dimension

I am using vuforia video playback demo with cloud recognition.
I have combined both projects and it is working properly. But currently video dimension is according to detected object. But i need fixed width and height when video plays.
Can anyone help me ?
Thanks in advance.
Well apparently Vuforia fixes the width and height at the start of the game no matter what the size of the object is. I could not find when exactly this operation is conducted but it is done at beginning of your game. When you change the size of the ImageTarget in runtime it is not fixed anymore. Add these lines to your OnTrackingFound function of DefaultTrackableEventHandler.cs
if (this.name == "WhateverTheNameOfYourRelatedImageTarget"&& !isScaled)
{
//Increase the size however you want i just added 1 to each dimension
this.transform.localScale += Vector3.one;
// make isScaled true not to scale every time it is found initially it shoud be false
isScaled = true;
}
Good luck!
What i usually do is , instead of Videoplayback , i play the video on canvas object and hook this object to Defaulttrackableeventhandler script. So when target is found, gameobject.setactive(true) and gameobject.setactive(false) when target is lost. By this method the size of the gameobject is fixed and it stays in a fixed location .
I just made an example you can get here (have to import it to any project and open the scene Assets/VideoExample/Examples). You can see there a bit clearer what the ScreenSpace - Overlay does ... it might be better to just switch to ScreenSpace - Camera in general

Error series vanishes on resizing window

Following plot has a error series Series2 which is not displayed on this chart, but legends says about its existence. This series needs to be displayed with minimum y value as infinity. But, Tee chart doesn't have any provision to specify -Infinity directly. So, we defined a huge negative number instead; which is significantly larger than the y axis to give an appearance of -Infinity to the user. But, if the chart area becomes too small compared to this huge negative number, the series (here series2) vanishes entirely.
Here is the series data used -
Series2 Points:
X-------------------->>Bar-------------------->>Std. Error
1432 --------->> -50.19380462 ----------->> 50.20619538
1797 ---------->> 50.19380462 ----------->> 50.20619538
2164 ---------->> -50.19380462 ----------->> 50.20619538
2529 --------->> -50.19380462 ----------->> 50.20619538
Can anyone please help to resolve this issue?
Thanking you.
The next release of TeeChart for .NET includes support for extended Axis ranges, from Double.MinValue to Double.MaxValue, and goes some way further to handle infinite value issues. That doesn't say for sure that it will resolve the issue you describe here. If you are able to send Steema Support a sample project that shows the issue we can test it with the new release.

Height of tab (JTabbedPane) does not change

As the title says, the height of my tabs is not increasing as it should, my code looks like this:
JTabbedPane jtp = new JTabbedPane();
JLabel iconInTab = new JLabel(new ImageIcon("myImage.png"));
iconInTab.setPreferredSize(new Dimension(100,80)); // is the size of my Image, I've also try to do this using getSize
jtp.addTab(null,new JPanel());
jtp.setTabComponentAt(0,iconInTab);
I've also try this using html but it did not work either:
jtp.addTab("<html><p><p><p></html>",new ImageIcon("myImage.png"),new JPanel());
with the first code the problem is not the change of the size horizontally (the width change correctly), the problem is only on the height, with the second code, if I add multiple lines inside the html code, the text appear incomplete (just show the middle line) (also the width behaves as expected, the problem is the height). . .
why is this happening? or how could I get this done?
Note: S.O.: Mac OS X 10.8.1
Solved!!! The problem was that the default UI over MAC OS X (com.apple.laf.AquaTabbedPaneContrastUI), you only need to change it to the basicTabbedPaneUI (or the one of your preference), in my particular case I need to extend this class (it was a pain in the *, because what I wanted was really complex) to get the look & feel that I was expecting, if you have the same trouble just do this before adding your tabs:
myTabbedPane.setUI(new BasicTabbedPaneUI());
Note: Checking the default UI of your TabbedPane, may solve many different problems.

When I load an image in OpenCV it is always darker than the original. Why?

So I load a color .png file that has been taken with an iphone using cvLoadImage. And after it's been loaded, when I immediately display it in my X11 terminal, the image is definitely darker than the original png file.
I currently use this to load the image:
IplImage *img3 = cvLoadImage( "bright.png", 1);
For the second parameter I have tried all of the following:
CV_LOAD_IMAGE_UNCHANGED
CV_LOAD_IMAGE_GRAYSCALE
CV_LOAD_IMAGE_COLOR
CV_LOAD_IMAGE_ANYDEPTH
CV_LOAD_IMAGE_ANYCOLOR
but none of these have worked. Grayscale definitely made the image grayscale. But as suggested from http://www.cognotics.com/opencv/docs/1.0/ref/opencvref_highgui.htm, even using CV_LOAD_IMAGE_ANYDEPTH | CV_LOAD_IMAGE_ANYCOLOR to load the image as truthfully as possible resulted in a darker image being displayed in the terminal.
Does anyone have any ideas on how to get the original image to display properly?
Thanks a lot in advance.
Yes, OpenCV does not apply Gamma correction.
// from: http://gegl.org/
// value: 0.0-1.0
static inline qreal
linear_to_gamma_2_2 (qreal value){
if (value > 0.0030402477)
return 1.055 * pow (value, (1.0/2.4)) - 0.055;
return 12.92 * value;
}
// from: http://gegl.org/
static inline qreal
gamma_2_2_to_linear (qreal value){
if (value > 0.03928)
return pow ((value + 0.055) / 1.055, 2.4);
return value / 12.92;
}
It only happens when you load it in OpenCV? Opening with any other viewer doesn't show a difference?
I can't confirm this without a few tests but I believe the iPhone display gamma is 1.8 (source: http://www.colorwiki.com/wiki/Color_on_iPhone#The_iPhone.27s_Display). Your X11 monitor probably is adjusted for 2.2 (like the rest of the world).
If this theory holds, yes, images are going to appear darker on X11 than on the iPhone. You may change your monitor calibration or do some image processing to account for the difference.
Edit:
I believe OpenCV really does not apply gamma correction. My reference to this is here:
http://permalink.gmane.org/gmane.comp.lib.opencv.devel/837
You might want to implement it yourself or "correct" it with ImageMagick. This page instructs you on how to do so:
http://www.4p8.com/eric.brasseur/gamma.html
I usually load an image with:
cvLoadImage("file.png", CV_LOAD_IMAGE_UNCHANGED);
One interesting test you could do to detect if OpenCV is really messing with the image data, is simply creating another image with cvCreateImage(), then copy the data to this newly created image and save it to another file with cvLoadImage().
Maybe, it's just a display error. Of course, I would suggest you to update to the most recent version of OpenCV.

In MATLAB, how do I plot to an image and save the result without displaying it?

This question kind of starts where this question ends up. MATLAB has a powerful and flexible image display system which lets you use the imshow and plot commands to display complex images and then save the result. For example:
im = imread('image.tif');
f = figure, imshow(im, 'Border', 'tight');
rectangle('Position', [100, 100, 10, 10]);
print(f, '-r80', '-dtiff', 'image2.tif');
This works great.
The problem is that if you are doing a lot of image processing, it starts to be real drag to show every image you create - you mostly want to just save them. I know I could start directly writing to an image and then saving the result. But using plot/rectangle/imshow is so easy, so I'm hoping there is a command that can let me call plot, imshow etc, not display the results and then save what would have been displayed. Anyone know any quick solutions for this?
Alternatively, a quick way to put a spline onto a bitmap might work...
When you create the figure you set the Visibile property to Off.
f = figure('visible','off')
Which in your case would be
im = imread('image.tif');
f = figure('visible','off'), imshow(im, 'Border', 'tight');
rectangle('Position', [100, 100, 10, 10]);
print(f, '-r80', '-dtiff', 'image2.tif');
And if you want to view it again you can do
set(f,'visible','on')
The simple answer to your question is given by Bessi and Mr Fooz: set the 'Visible' setting for the figure to 'off'. Although it's very easy to use commands like IMSHOW and PRINT to generate figures, I'll summarize why I think it's not necessarily the best option:
As illustrated by Mr Fooz's answer, there are many other factors that come into play when trying to save figures as images. The type of output you get is going to be dependent on many figure and axes settings, thus increasing the likelihood that you will not get the output you want. This could be especially problematic if you have your figures set to be invisible, since you won't notice some discrepancy that could be caused by a change in a default setting for the figure or axes. In short, your output becomes highly sensitive to a number of settings that you would then have to add to your code to control your output, as Mr Fooz's example shows.
Even if you're not viewing the figures as they are made, you're still probably making MATLAB do more work than is really necessary. Graphics objects are still created, even if they are not rendered. If speed is a concern, generating images from figures doesn't seem like the ideal solution.
My suggestion is to actually modify the image data directly and save it using IMWRITE. It may not be as easy as using IMSHOW and other plotting solutions, but I think it is more efficient and gives more robust and consistent results that are not as sensitive to various plot settings. For the example you give, I believe the alternative code for creating a black rectangle would look something like this:
im = imread('image.tif');
[r,c,d] = size(im);
x0 = 100;
y0 = 100;
w = 10;
h = 10;
x = [x0:x0+w x0*ones(1,h+1) x0:x0+w (x0+w)*ones(1,h+1)];
y = [y0*ones(1,w+1) y0:y0+h (y0+h)*ones(1,w+1) y0:y0+h];
index = sub2ind([r c],y,x);
im(index) = 0;
im(index+r*c) = 0;
im(index+2*r*c) = 0;
imwrite(im,'image2.tif');
I'm expanding on Bessi's solution here a bit. I've found that it's very helpful to know how to have the image take up the whole figure and to be able to tightly control the output image size.
% prevent the figure window from appearing at all
f = figure('visible','off');
% alternative way of hiding an existing figure
set(f, 'visible','off'); % can use the GCF function instead
% If you start getting odd error messages or blank images,
% add in a DRAWNOW call. Sometimes it helps fix rendering
% bugs, especially in long-running scripts on Linux.
%drawnow;
% optional: have the axes take up the whole figure
subplot('position', [0 0 1 1]);
% show the image and rectangle
im = imread('peppers.png');
imshow(im, 'border','tight');
rectangle('Position', [100, 100, 10, 10]);
% Save the image, controlling exactly the output
% image size (in this case, making it equal to
% the input's).
[H,W,D] = size(im);
dpi = 100;
set(f, 'paperposition', [0 0 W/dpi H/dpi]);
set(f, 'papersize', [W/dpi H/dpi]);
print(f, sprintf('-r%d',dpi), '-dtiff', 'image2.tif');
If you'd like to render the figure to a matrix, type "help #avifile/addframe", then extract the subfunction called "getFrameForFigure". It's a Mathworks-supplied function that uses some (currently) undocumented ways of extracting data from figure.
Here is a completely different answer:
If you want an image file out, why not just save the image instead of the entire figure?
im = magic(10)
imwrite(im/max(im(:)),'magic.jpg')
Then prove that it worked.
imshow('magic.jpg')
This can be done for indexed and RGB also for different output formats.
You could use -noFigureWindows to disable all figures.

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