I am running a spark streaming program that connects to a DatahighWay and it works fine if i run the program via Run. But if I create a jar and run the jar via spark-submit I get the following error. Does this mean there are some issues in spark connecting to one of it's executor nodes? It is run in local machine.
18/05/02 22:52:20 ERROR TaskSetManager: Task 0 in stage 1.0 failed 1 times; aborting job
18/05/02 22:52:20 ERROR ReceiverTracker: Receiver has been stopped. Try to restart it.
org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 1.0 failed 1 times, most recent failure: Lost task 0.0 in stage 1.0 (TID 1, localhost, executor driver): java.io.IOException: Failed to connect to /10.184.199.182:62431
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:232)
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:182)
at org.apache.spark.rpc.netty.NettyRpcEnv.downloadClient(NettyRpcEnv.scala:366)
at org.apache.spark.rpc.netty.NettyRpcEnv.openChannel(NettyRpcEnv.scala:332)
at org.apache.spark.util.Utils$.doFetchFile(Utils.scala:654)
at org.apache.spark.util.Utils$.fetchFile(Utils.scala:480)
at org.apache.spark.executor.Executor$$anonfun$org$apache$spark$executor$Executor$$updateDependencies$5.apply(Executor.scala:696)
at org.apache.spark.executor.Executor$$anonfun$org$apache$spark$executor$Executor$$updateDependencies$5.apply(Executor.scala:688)
at scala.collection.TraversableLike$WithFilter$$anonfun$foreach$1.apply(TraversableLike.scala:733)
at scala.collection.Iterator$class.foreach(Iterator.scala:893)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1336)
at scala.collection.IterableLike$class.foreach(IterableLike.scala:72)
at scala.collection.AbstractIterable.foreach(Iterable.scala:54)
at scala.collection.TraversableLike$WithFilter.foreach(TraversableLike.scala:732)
at org.apache.spark.executor.Executor.org$apache$spark$executor$Executor$$updateDependencies(Executor.scala:688)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:308)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: io.netty.channel.AbstractChannel$AnnotatedConnectException: Operation timed out: /10.184.199.182:62431
at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method)
at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:717)
at io.netty.channel.socket.nio.NioSocketChannel.doFinishConnect(NioSocketChannel.java:257)
at io.netty.channel.nio.AbstractNioChannel$AbstractNioUnsafe.finishConnect(AbstractNioChannel.java:291)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:631)
at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:566)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:480)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:442)
at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:131)
at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:144)
... 1 more
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1499)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1487)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1486)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1486)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:814)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:814)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:814)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1714)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1669)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1658)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
Caused by: java.io.IOException: Failed to connect to /10.184.199.182:62431
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:232)
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:182)
at org.apache.spark.rpc.netty.NettyRpcEnv.downloadClient(NettyRpcEnv.scala:366)
at org.apache.spark.rpc.netty.NettyRpcEnv.openChannel(NettyRpcEnv.scala:332)
at org.apache.spark.util.Utils$.doFetchFile(Utils.scala:654)
at org.apache.spark.util.Utils$.fetchFile(Utils.scala:480)
at org.apache.spark.executor.Executor$$anonfun$org$apache$spark$executor$Executor$$updateDependencies$5.apply(Executor.scala:696)
at org.apache.spark.executor.Executor$$anonfun$org$apache$spark$executor$Executor$$updateDependencies$5.apply(Executor.scala:688)
at scala.collection.TraversableLike$WithFilter$$anonfun$foreach$1.apply(TraversableLike.scala:733)
at scala.collection.Iterator$class.foreach(Iterator.scala:893)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1336)
at scala.collection.IterableLike$class.foreach(IterableLike.scala:72)
at scala.collection.AbstractIterable.foreach(Iterable.scala:54)
at scala.collection.TraversableLike$WithFilter.foreach(TraversableLike.scala:732)
at org.apache.spark.executor.Executor.org$apache$spark$executor$Executor$$updateDependencies(Executor.scala:688)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:308)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: io.netty.channel.AbstractChannel$AnnotatedConnectException: Operation timed out: /10.184.199.182:62431
at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method)
at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:717)
at io.netty.channel.socket.nio.NioSocketChannel.doFinishConnect(NioSocketChannel.java:257)
at io.netty.channel.nio.AbstractNioChannel$AbstractNioUnsafe.finishConnect(AbstractNioChannel.java:291)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:631)
at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:566)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:480)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:442)
at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:131)
at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:144)
... 1 more
It seems like a connection issue, not sure how it is happening.
Related
I am trying to load a data set with spark-redis, but the operation always fail. The spark dataframe that I am trying to write has 85 million rows, but the write operation roughly fails after 25 million rows in. I wonder how to solve this kind of problem.
Here are the operations that I execute in my Python script:
SPARK_JARS = ['/home/jovyan/jedis-3.6.0.jar', '/home/jovyan/spark-redis_2.12-2.6.0.jar']
spark = (SparkSession.builder.master(master_uri).appName('redis.test')
.config('spark.executor.memory', '28g')
.config('spark.cores.max', 16)
.config('spark.redis.host', REDIS_HOST)
.config('spark.redis.port', 6379)
.config('spark.redis.db', 0)
.config('spark.sql.debug.maxToStringFields', 65535)
.config('spark.jars', ','.join(SPARK_JARS)).enableHiveSupport().getOrCreate())
df = spark.sql('select * from input_table')
df.write.format("org.apache.spark.sql.redis").option("table", "output_table").option("key.column", "id").option("dbNum", 0).save();
I am trying to store information from an Iceberg table to a Redis hash. The version of spark-redis I am using is spark-redis_2.12-2.6.0.jar. I am running my script on Spark 3.1.1 and the Redis cluster I am trying to access uses version 6.0.4. When I run the script, it starts loading the data in the hash from for a couple of minutes. Then, a SocketTimeoutException is raised. But the data continues to be loaded in the hash. However, after 10 minutes (this varies from session to session), there is an additional failure and from this point, I cannot connect to the Redis data store anymore (connection refused). This connection refusal state is temporary, but can last a few hours.
Here is the log (I had to skip parts of it because it was too long to fit in a message):
ANTLR Tool version 4.8 used for code generation does not match the current runtime version 4.7.1ANTLR Runtime version 4.8 used for parser compilation does not match the current runtime version 4.7.1ANTLR Tool version 4.8 used for code generation does not match the current runtime version 4.7.1ANTLR Runtime version 4.8 used for parser compilation does not match 21/06/07 17:26:08 WARN SessionState: METASTORE_FILTER_HOOK will be ignored, since hive.security.authorization.manager is set to instance of HiveAuthorizerFactory.
21/06/07 17:30:07 WARN TaskSetManager: Lost task 13.0 in stage 2.0 (TID 16) (x.x.x.x executor 0): redis.clients.jedis.exceptions.JedisConnectionException: java.net.SocketTimeoutException: Read timed out
at redis.clients.jedis.util.RedisInputStream.ensureFill(RedisInputStream.java:205)
at redis.clients.jedis.util.RedisInputStream.readByte(RedisInputStream.java:43)
at redis.clients.jedis.Protocol.process(Protocol.java:158)
at redis.clients.jedis.Protocol.read(Protocol.java:223)
at redis.clients.jedis.Connection.readProtocolWithCheckingBroken(Connection.java:352)
at redis.clients.jedis.Connection.getMany(Connection.java:364)
at redis.clients.jedis.Pipeline.sync(Pipeline.java:98)
at com.redislabs.provider.redis.util.PipelineUtils$.$anonfun$foreachWithPipeline$1(PipelineUtils.scala:71)
at com.redislabs.provider.redis.util.PipelineUtils$.$anonfun$foreachWithPipeline$1$adapted(PipelineUtils.scala:67)
at scala.collection.IndexedSeqOptimized.foreach(IndexedSeqOptimized.scala:36)
at scala.collection.IndexedSeqOptimized.foreach$(IndexedSeqOptimized.scala:33)
at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:198)
at com.redislabs.provider.redis.util.PipelineUtils$.foreachWithPipeline(PipelineUtils.scala:67)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$8(RedisSourceRelation.scala:143)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$8$adapted(RedisSourceRelation.scala:141)
at scala.collection.Iterator.foreach(Iterator.scala:941)
at scala.collection.Iterator.foreach$(Iterator.scala:941)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1429)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$6(RedisSourceRelation.scala:141)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$6$adapted(RedisSourceRelation.scala:138)
at scala.collection.Iterator.foreach(Iterator.scala:941)
at scala.collection.Iterator.foreach$(Iterator.scala:941)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1429)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$5(RedisSourceRelation.scala:138)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$5$adapted(RedisSourceRelation.scala:136)
at org.apache.spark.rdd.RDD.$anonfun$foreachPartition$2(RDD.scala:1020)
at org.apache.spark.rdd.RDD.$anonfun$foreachPartition$2$adapted(RDD.scala:1020)
at org.apache.spark.SparkContext.$anonfun$runJob$5(SparkContext.scala:2242)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:131)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:497)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1439)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:500)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.net.SocketTimeoutException: Read timed out
at java.net.SocketInputStream.socketRead0(Native Method)
at java.net.SocketInputStream.socketRead(SocketInputStream.java:116)
at java.net.SocketInputStream.read(SocketInputStream.java:171)
at java.net.SocketInputStream.read(SocketInputStream.java:141)
at java.net.SocketInputStream.read(SocketInputStream.java:127)
at redis.clients.jedis.util.RedisInputStream.ensureFill(RedisInputStream.java:199)
… 35 more
21/06/07 17:41:57 WARN TaskSetManager: Lost task 19.0 in stage 2.0 (TID 22) (x.x.x.x executor 0): redis.clients.jedis.exceptions.JedisConnectionException: java.net.SocketTimeoutException: Read timed out
at redis.clients.jedis.util.RedisInputStream.ensureFill(RedisInputStream.java:205)
at redis.clients.jedis.util.RedisInputStream.readByte(RedisInputStream.java:43)
…
Caused by: java.net.SocketTimeoutException: Read timed out
at java.net.SocketInputStream.socketRead0(Native Method)
at java.net.SocketInputStream.socketRead(SocketInputStream.java:116)
at java.net.SocketInputStream.read(SocketInputStream.java:171)
at java.net.SocketInputStream.read(SocketInputStream.java:141)
at java.net.SocketInputStream.read(SocketInputStream.java:127)
at redis.clients.jedis.util.RedisInputStream.ensureFill(RedisInputStream.java:199)
… 35 more
21/06/07 17:52:54 WARN TaskSetManager: Lost task 4.2 in stage 2.0 (TID 42) (x.x.x.x executor 0): redis.clients.jedis.exceptions.JedisConnectionException: Unexpected end of stream.
at redis.clients.jedis.util.RedisInputStream.ensureFill(RedisInputStream.java:202)
at redis.clients.jedis.util.RedisInputStream.readByte(RedisInputStream.java:43)
…
21/06/07 17:52:54 WARN TaskSetManager: Lost task 2.1 in stage 2.0 (TID 46) (x.x.x.x executor 0): redis.clients.jedis.exceptions.JedisConnectionException: java.net.SocketException: Connection reset
at redis.clients.jedis.util.RedisInputStream.ensureFill(RedisInputStream.java:205)
…
Caused by: java.net.SocketException: Connection reset
at java.net.SocketInputStream.read(SocketInputStream.java:210)
at java.net.SocketInputStream.read(SocketInputStream.java:141)
at java.net.SocketInputStream.read(SocketInputStream.java:127)
at redis.clients.jedis.util.RedisInputStream.ensureFill(RedisInputStream.java:199)
… 35 more
21/06/07 17:52:56 WARN TaskSetManager: Lost task 4.3 in stage 2.0 (TID 52) (x.x.x.x executor 0): redis.clients.jedis.exceptions.JedisConnectionException: Could not get a resource from the pool
at redis.clients.jedis.util.Pool.getResource(Pool.java:84)
…
Caused by: redis.clients.jedis.exceptions.JedisConnectionException: Failed to create socket.
at redis.clients.jedis.DefaultJedisSocketFactory.createSocket(DefaultJedisSocketFactory.java:110)
at redis.clients.jedis.Connection.connect(Connection.java:226)
…
Caused by: java.net.ConnectException: Connection refused (Connection refused)
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:607)
at redis.clients.jedis.DefaultJedisSocketFactory.createSocket(DefaultJedisSocketFactory.java:80)
… 38 more
21/06/07 17:52:56 ERROR TaskSetManager: Task 4 in stage 2.0 failed 4 times; aborting job
Traceback (most recent call last):
File “redis_load.py”, line 106, in
df = spark.sql(‘select * from input_table’)
File “/opt/conda/lib/python3.8/site-packages/pyspark/sql/readwriter.py”, line 1107, in save
self._jwrite.save()
File “/opt/conda/lib/python3.8/site-packages/py4j/java_gateway.py”, line 1304, in call
return_value = get_return_value(
File “/opt/conda/lib/python3.8/site-packages/pyspark/sql/utils.py”, line 111, in deco
return f(*a, **kw)
File “/opt/conda/lib/python3.8/site-packages/py4j/protocol.py”, line 326, in get_return_value
raise Py4JJavaError(
py4j.protocol.Py4JJavaError: An error occurred while calling o90.save.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 4 in stage 2.0 failed 4 times, most recent failure: Lost task 4.3 in stage 2.0 (TID 52) (x.x.x.x executor 0): redis.clients.jedis.exceptions.JedisConnectionException: Could not get a resource from the pool
at redis.clients.jedis.util.Pool.getResource(Pool.java:84)
at redis.clients.jedis.JedisPool.getResource(JedisPool.java:366)
at com.redislabs.provider.redis.ConnectionPool$.connect(ConnectionPool.scala:35)
at com.redislabs.provider.redis.RedisEndpoint.connect(RedisConfig.scala:72)
at com.redislabs.provider.redis.RedisNode.connect(RedisConfig.scala:89)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$8(RedisSourceRelation.scala:142)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$8$adapted(RedisSourceRelation.scala:141)
at scala.collection.Iterator.foreach(Iterator.scala:941)
at scala.collection.Iterator.foreach$(Iterator.scala:941)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1429)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$6(RedisSourceRelation.scala:141)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$6$adapted(RedisSourceRelation.scala:138)
at scala.collection.Iterator.foreach(Iterator.scala:941)
at scala.collection.Iterator.foreach$(Iterator.scala:941)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1429)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$5(RedisSourceRelation.scala:138)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$5$adapted(RedisSourceRelation.scala:136)
at org.apache.spark.rdd.RDD.$anonfun$foreachPartition$2(RDD.scala:1020)
at org.apache.spark.rdd.RDD.$anonfun$foreachPartition$2$adapted(RDD.scala:1020)
at org.apache.spark.SparkContext.$anonfun$runJob$5(SparkContext.scala:2242)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:131)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:497)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1439)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:500)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: redis.clients.jedis.exceptions.JedisConnectionException: Failed to create socket.
at redis.clients.jedis.DefaultJedisSocketFactory.createSocket(DefaultJedisSocketFactory.java:110)
at redis.clients.jedis.Connection.connect(Connection.java:226)
at redis.clients.jedis.BinaryClient.connect(BinaryClient.java:135)
at redis.clients.jedis.BinaryJedis.connect(BinaryJedis.java:309)
at redis.clients.jedis.BinaryJedis.initializeFromClientConfig(BinaryJedis.java:87)
at redis.clients.jedis.BinaryJedis.(BinaryJedis.java:292)
at redis.clients.jedis.Jedis.(Jedis.java:167)
at redis.clients.jedis.JedisFactory.makeObject(JedisFactory.java:177)
at org.apache.commons.pool2.impl.GenericObjectPool.create(GenericObjectPool.java:889)
at org.apache.commons.pool2.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:424)
at org.apache.commons.pool2.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:349)
at redis.clients.jedis.util.Pool.getResource(Pool.java:75)
… 27 more
Caused by: java.net.ConnectException: Connection refused (Connection refused)
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:607)
at redis.clients.jedis.DefaultJedisSocketFactory.createSocket(DefaultJedisSocketFactory.java:80)
… 38 more
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.failJobAndIndependentStages(DAGScheduler.scala:2253)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2(DAGScheduler.scala:2202)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2$adapted(DAGScheduler.scala:2201)
at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62)
at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:2201)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1(DAGScheduler.scala:1078)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1$adapted(DAGScheduler.scala:1078)
at scala.Option.foreach(Option.scala:407)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:1078)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2440)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2382)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2371)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:868)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2202)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2223)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2242)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2267)
at org.apache.spark.rdd.RDD.$anonfun$foreachPartition$1(RDD.scala:1020)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:414)
at org.apache.spark.rdd.RDD.foreachPartition(RDD.scala:1018)
at org.apache.spark.sql.Dataset.$anonfun$foreachPartition$1(Dataset.scala:2906)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23)
at org.apache.spark.sql.Dataset.$anonfun$withNewRDDExecutionId$1(Dataset.scala:3676)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withNewExecutionId$5(SQLExecution.scala:103)
at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:163)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withNewExecutionId$1(SQLExecution.scala:90)
at org.apache.spark.sql.SparkSession.withActive(SparkSession.scala:772)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:64)
at org.apache.spark.sql.Dataset.withNewRDDExecutionId(Dataset.scala:3674)
at org.apache.spark.sql.Dataset.foreachPartition(Dataset.scala:2906)
at org.apache.spark.sql.redis.RedisSourceRelation.insert(RedisSourceRelation.scala:136)
at org.apache.spark.sql.redis.DefaultSource.createRelation(DefaultSource.scala:30)
at org.apache.spark.sql.execution.datasources.SaveIntoDataSourceCommand.run(SaveIntoDataSourceCommand.scala:46)
at org.apache.spark.sql.execution.command.ExecutedCommandExec.sideEffectResult$lzycompute(commands.scala:70)
at org.apache.spark.sql.execution.command.ExecutedCommandExec.sideEffectResult(commands.scala:68)
at org.apache.spark.sql.execution.command.ExecutedCommandExec.doExecute(commands.scala:90)
at org.apache.spark.sql.execution.SparkPlan.$anonfun$execute$1(SparkPlan.scala:180)
at org.apache.spark.sql.execution.SparkPlan.$anonfun$executeQuery$1(SparkPlan.scala:218)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:215)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:176)
at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:132)
at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:131)
at org.apache.spark.sql.DataFrameWriter.$anonfun$runCommand$1(DataFrameWriter.scala:989)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withNewExecutionId$5(SQLExecution.scala:103)
at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:163)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withNewExecutionId$1(SQLExecution.scala:90)
at org.apache.spark.sql.SparkSession.withActive(SparkSession.scala:772)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:64)
at org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:989)
at org.apache.spark.sql.DataFrameWriter.saveToV1Source(DataFrameWriter.scala:438)
at org.apache.spark.sql.DataFrameWriter.saveInternal(DataFrameWriter.scala:415)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:301)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:282)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:238)
at java.lang.Thread.run(Thread.java:748)
Caused by: redis.clients.jedis.exceptions.JedisConnectionException: Could not get a resource from the pool
at redis.clients.jedis.util.Pool.getResource(Pool.java:84)
at redis.clients.jedis.JedisPool.getResource(JedisPool.java:366)
at com.redislabs.provider.redis.ConnectionPool$.connect(ConnectionPool.scala:35)
at com.redislabs.provider.redis.RedisEndpoint.connect(RedisConfig.scala:72)
at com.redislabs.provider.redis.RedisNode.connect(RedisConfig.scala:89)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$8(RedisSourceRelation.scala:142)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$8$adapted(RedisSourceRelation.scala:141)
at scala.collection.Iterator.foreach(Iterator.scala:941)
at scala.collection.Iterator.foreach$(Iterator.scala:941)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1429)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$6(RedisSourceRelation.scala:141)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$6$adapted(RedisSourceRelation.scala:138)
at scala.collection.Iterator.foreach(Iterator.scala:941)
at scala.collection.Iterator.foreach$(Iterator.scala:941)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1429)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$5(RedisSourceRelation.scala:138)
at org.apache.spark.sql.redis.RedisSourceRelation.$anonfun$insert$5$adapted(RedisSourceRelation.scala:136)
at org.apache.spark.rdd.RDD.$anonfun$foreachPartition$2(RDD.scala:1020)
at org.apache.spark.rdd.RDD.$anonfun$foreachPartition$2$adapted(RDD.scala:1020)
at org.apache.spark.SparkContext.$anonfun$runJob$5(SparkContext.scala:2242)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:131)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:497)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1439)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:500)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
… 1 more
Caused by: redis.clients.jedis.exceptions.JedisConnectionException: Failed to create socket.
at redis.clients.jedis.DefaultJedisSocketFactory.createSocket(DefaultJedisSocketFactory.java:110)
at redis.clients.jedis.Connection.connect(Connection.java:226)
at redis.clients.jedis.BinaryClient.connect(BinaryClient.java:135)
at redis.clients.jedis.BinaryJedis.connect(BinaryJedis.java:309)
at redis.clients.jedis.BinaryJedis.initializeFromClientConfig(BinaryJedis.java:87)
at redis.clients.jedis.BinaryJedis.(BinaryJedis.java:292)
at redis.clients.jedis.Jedis.(Jedis.java:167)
at redis.clients.jedis.JedisFactory.makeObject(JedisFactory.java:177)
at org.apache.commons.pool2.impl.GenericObjectPool.create(GenericObjectPool.java:889)
at org.apache.commons.pool2.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:424)
at org.apache.commons.pool2.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:349)
at redis.clients.jedis.util.Pool.getResource(Pool.java:75)
… 27 more
Caused by: java.net.ConnectException: Connection refused (Connection refused)
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:607)
at redis.clients.jedis.DefaultJedisSocketFactory.createSocket(DefaultJedisSocketFactory.java:80)
… 38 more
21/06/07 17:52:57 WARN TaskSetManager: Lost task 15.2 in stage 2.0 (TID 67) (x.x.x.x executor 0): TaskKilled (Stage cancelled)
It looks like there is some connection pool that gets exhausted, but I have no idea how you can tell spark-redis how connections should be allocated and when to recycle them. I also do not know if the problem arise because of the network configuration or maybe the Redis server configuration. Any pointers on how to troubleshoot this problems would be appreciated.
I am also getting similar problems when I run python script of Java app that uses the Redis API to read and write to Redis using pipelines.
I am seeing many of these logs:
Asynchronous AOF fsync is taking too long (disk is busy?)
It looks like while performing the write, because I have enabled persistence in my Redis server, the server is periodically writing the hash to disk which causes a delay in response from time to time. The socket (read) timeout is 2 seconds by default I believe. It seems like the sevrer may not respond within this limit at times. I have increased this to a much higher value doing .config("spark.redis.timeout", DEFAULT_TIMEOUT) on the Spark context (I could have also set the timeout on the dataframe adding the following option to the write operation: .option("timeout", DEFAULT_TIMEOUT).
I have a 7 node cluster setup on CentOS VMs in on-prem fashion.
Earlier the VMs were co-located and everything used to work fine, but since yesterday as the VMs have been spread across the data centre (But in same rack), I am facing Connection refused and IOException: Failed to connect to errors.
Logs:
2019-05-24 03:33:37 INFO TorrentBroadcast:54 - Started reading broadcast variable 6
2019-05-24 03:33:37 ERROR RetryingBlockFetcher:143 - Exception while beginning fetch of 1 outstanding blocks
java.io.IOException: Failed to connect to <HOST/IP>:38000
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:245)
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:187)
at org.apache.spark.network.netty.NettyBlockTransferService$$anon$2.createAndStart(NettyBlockTransferService.scala:113)
at org.apache.spark.network.shuffle.RetryingBlockFetcher.fetchAllOutstanding(RetryingBlockFetcher.java:141)
at org.apache.spark.network.shuffle.RetryingBlockFetcher.start(RetryingBlockFetcher.java:121)
at org.apache.spark.network.netty.NettyBlockTransferService.fetchBlocks(NettyBlockTransferService.scala:123)
at org.apache.spark.network.BlockTransferService.fetchBlockSync(BlockTransferService.scala:98)
at org.apache.spark.storage.BlockManager.getRemoteBytes(BlockManager.scala:693)
at org.apache.spark.broadcast.TorrentBroadcast$$anonfun$org$apache$spark$broadcast$TorrentBroadcast$$readBlocks$1.apply$mcVI$sp(TorrentBroadcast.scala:162)
at org.apache.spark.broadcast.TorrentBroadcast$$anonfun$org$apache$spark$broadcast$TorrentBroadcast$$readBlocks$1.apply(TorrentBroadcast.scala:151)
at org.apache.spark.broadcast.TorrentBroadcast$$anonfun$org$apache$spark$broadcast$TorrentBroadcast$$readBlocks$1.apply(TorrentBroadcast.scala:151)
at scala.collection.immutable.List.foreach(List.scala:381)
at org.apache.spark.broadcast.TorrentBroadcast.org$apache$spark$broadcast$TorrentBroadcast$$readBlocks(TorrentBroadcast.scala:151)
at org.apache.spark.broadcast.TorrentBroadcast$$anonfun$readBroadcastBlock$1$$anonfun$apply$2.apply(TorrentBroadcast.scala:231)
at scala.Option.getOrElse(Option.scala:121)
at org.apache.spark.broadcast.TorrentBroadcast$$anonfun$readBroadcastBlock$1.apply(TorrentBroadcast.scala:211)
at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1347)
at org.apache.spark.broadcast.TorrentBroadcast.readBroadcastBlock(TorrentBroadcast.scala:207)
at org.apache.spark.broadcast.TorrentBroadcast._value$lzycompute(TorrentBroadcast.scala:66)
at org.apache.spark.broadcast.TorrentBroadcast._value(TorrentBroadcast.scala:66)
at org.apache.spark.broadcast.TorrentBroadcast.getValue(TorrentBroadcast.scala:96)
at org.apache.spark.broadcast.Broadcast.value(Broadcast.scala:70)
at org.apache.spark.sql.execution.datasources.text.TextFileFormat$$anonfun$readToUnsafeMem$1.apply(TextFileFormat.scala:125)
at org.apache.spark.sql.execution.datasources.text.TextFileFormat$$anonfun$readToUnsafeMem$1.apply(TextFileFormat.scala:124)
at org.apache.spark.sql.execution.datasources.FileFormat$$anon$1.apply(FileFormat.scala:148)
at org.apache.spark.sql.execution.datasources.FileFormat$$anon$1.apply(FileFormat.scala:132)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.org$apache$spark$sql$execution$datasources$FileScanRDD$$anon$$readCurrentFile(FileScanRDD.scala:128)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:182)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:109)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$10$$anon$1.hasNext(WholeStageCodegenExec.scala:614)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:461)
at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:461)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at scala.collection.Iterator$class.foreach(Iterator.scala:893)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1336)
at scala.collection.TraversableOnce$class.foldLeft(TraversableOnce.scala:157)
at scala.collection.AbstractIterator.foldLeft(Iterator.scala:1336)
at scala.collection.TraversableOnce$class.aggregate(TraversableOnce.scala:214)
at scala.collection.AbstractIterator.aggregate(Iterator.scala:1336)
at org.apache.spark.rdd.RDD$$anonfun$aggregate$1$$anonfun$21.apply(RDD.scala:1122)
at org.apache.spark.rdd.RDD$$anonfun$aggregate$1$$anonfun$21.apply(RDD.scala:1122)
at org.apache.spark.SparkContext$$anonfun$33.apply(SparkContext.scala:2130)
at org.apache.spark.SparkContext$$anonfun$33.apply(SparkContext.scala:2130)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:109)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: io.netty.channel.AbstractChannel$AnnotatedConnectException: Connection refused: <HOST/IP>:38000
at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method)
at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:717)
at io.netty.channel.socket.nio.NioSocketChannel.doFinishConnect(NioSocketChannel.java:323)
at io.netty.channel.nio.AbstractNioChannel$AbstractNioUnsafe.finishConnect(AbstractNioChannel.java:340)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:633)
at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:580)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:497)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:459)
at io.netty.util.concurrent.SingleThreadEventExecutor$5.run(SingleThreadEventExecutor.java:858)
at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:138)
... 1 more
Caused by: java.net.ConnectException: Connection refused
... 11 more
2019-05-24 03:33:37 INFO RetryingBlockFetcher:164 - Retrying fetch (1/3) for 1 outstanding blocks after 5000 ms
2019-05-24 03:33:42 ERROR RetryingBlockFetcher:143 - Exception while beginning fetch of 1 outstanding blocks (after 1 retries)
java.io.IOException: Failed to connect to <HOST/IP>:38000
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:245)
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:187)
at org.apache.spark.network.netty.NettyBlockTransferService$$anon$2.createAndStart(NettyBlockTransferService.scala:113)
at org.apache.spark.network.shuffle.RetryingBlockFetcher.fetchAllOutstanding(RetryingBlockFetcher.java:141)
at org.apache.spark.network.shuffle.RetryingBlockFetcher.lambda$initiateRetry$0(RetryingBlockFetcher.java:169)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:138)
at java.lang.Thread.run(Thread.java:748)
Caused by: io.netty.channel.AbstractChannel$AnnotatedConnectException: Connection refused: <HOST/IP>:38000
at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method)
at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:717)
at io.netty.channel.socket.nio.NioSocketChannel.doFinishConnect(NioSocketChannel.java:323)
at io.netty.channel.nio.AbstractNioChannel$AbstractNioUnsafe.finishConnect(AbstractNioChannel.java:340)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:633)
at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:580)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:497)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:459)
at io.netty.util.concurrent.SingleThreadEventExecutor$5.run(SingleThreadEventExecutor.java:858)
... 2 more
Caused by: java.net.ConnectException: Connection refused
... 11 more
2019-05-24 03:33:42 INFO RetryingBlockFetcher:164 - Retrying fetch (2/3) for 1 outstanding blocks after 5000 ms
2019-05-24 03:33:47 ERROR RetryingBlockFetcher:143 - Exception while beginning fetch of 1 outstanding blocks (after 2 retries)
java.io.IOException: Failed to connect to <HOST/IP>:38000
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:245)
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:187)
at org.apache.spark.network.netty.NettyBlockTransferService$$anon$2.createAndStart(NettyBlockTransferService.scala:113)
at org.apache.spark.network.shuffle.RetryingBlockFetcher.fetchAllOutstanding(RetryingBlockFetcher.java:141)
at org.apache.spark.network.shuffle.RetryingBlockFetcher.lambda$initiateRetry$0(RetryingBlockFetcher.java:169)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:138)
at java.lang.Thread.run(Thread.java:748)
Caused by: io.netty.channel.AbstractChannel$AnnotatedConnectException: Connection refused: <HOST/IP>:38000
at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method)
at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:717)
at io.netty.channel.socket.nio.NioSocketChannel.doFinishConnect(NioSocketChannel.java:323)
at io.netty.channel.nio.AbstractNioChannel$AbstractNioUnsafe.finishConnect(AbstractNioChannel.java:340)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:633)
at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:580)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:497)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:459)
at io.netty.util.concurrent.SingleThreadEventExecutor$5.run(SingleThreadEventExecutor.java:858)
... 2 more
Caused by: java.net.ConnectException: Connection refused
... 11 more
My theory is because the VMs have been spread, there may be delay in their communication and that delay may be overshooting the timeout and hence causing the connection refused or timeouts? Will it be correct to think that ways?
If not, what could be the issue here?
Thanks for the help!
Figured it out.
BlockManager service was running on 127.0.0.1 because of recent change to VMs.
Fixed that and spark cluster was back to being awsome!
I am running a job with 4000 executors to process 3 years of data ~ 1 Petabyte. I run one query per day and process 2-3 days at the same time. Approx after processing 700 days total (~ 7 hours) it fails with some shuffle exception.
Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 10259 in stage 447.0 failed 4 times, most recent failure: Lost task 10259.3 in stage 447.0 (TID 1691674, machine0689.datacenter.domain.com, executor 2647): java.io.FileNotFoundException: /data4/yarn/nm/usercache/my_application/appcache/application_1535740315164_66119/blockmgr-10614d00-de24-4b2c-8bd6-2463ab4b358c/2e/temp_shuffle_6d6bae3b-d4c4-44e7-b2de-e0cdd71d35e0 (Read-only file system)
Has anyone seen this error or help figure it out? Here's the spark configuration:
spark.network.timeout=300s
spark.executor.heartbeatInterval=60s
spark.shuffle.service.enabled=true
spark.executor.instances=4000
spark.executor.cores=4
spark.executor.memory=32G
spark.executor.memoryOverhead=4G
spark.driver.cores=8
spark.driver.memory=32G
spark.driver.memoryOverhead=4G
Full StackTrace:
User class threw exception: org.apache.spark.SparkException: Job aborted.
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:224)
at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand.run(InsertIntoHadoopFsRelationCommand.scala:154)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult$lzycompute(commands.scala:104)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult(commands.scala:102)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.doExecute(commands.scala:122)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:131)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:127)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:155)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:152)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:127)
at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:80)
at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:80)
at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:654)
at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:654)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:77)
at org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:654)
at org.apache.spark.sql.DataFrameWriter.saveToV1Source(DataFrameWriter.scala:273)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:267)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:225)
at org.apache.spark.sql.DataFrameWriter.parquet(DataFrameWriter.scala:547)
at com.mycompany.filter.Filter.process(Filter.scala:143)
at com.mycompany.filter.Filter$$anonfun$filterDataset$1.apply(Filter.scala:60)
at com.mycompany.filter.Filter$$anonfun$filterDataset$1.apply(Filter.scala:60)
at scala.collection.Iterator$class.foreach(Iterator.scala:893)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1336)
at scala.collection.parallel.ParIterableLike$Foreach.leaf(ParIterableLike.scala:972)
at scala.collection.parallel.Task$$anonfun$tryLeaf$1.apply$mcV$sp(Tasks.scala:49)
at scala.collection.parallel.Task$$anonfun$tryLeaf$1.apply(Tasks.scala:48)
at scala.collection.parallel.Task$$anonfun$tryLeaf$1.apply(Tasks.scala:48)
at scala.collection.parallel.Task$class.tryLeaf(Tasks.scala:51)
at scala.collection.parallel.ParIterableLike$Foreach.tryLeaf(ParIterableLike.scala:969)
at scala.collection.parallel.AdaptiveWorkStealingTasks$WrappedTask$class.internal(Tasks.scala:169)
at scala.collection.parallel.AdaptiveWorkStealingForkJoinTasks$WrappedTask.internal(Tasks.scala:443)
at scala.collection.parallel.AdaptiveWorkStealingTasks$WrappedTask$class.compute(Tasks.scala:149)
at scala.collection.parallel.AdaptiveWorkStealingForkJoinTasks$WrappedTask.compute(Tasks.scala:443)
at scala.concurrent.forkjoin.RecursiveAction.exec(RecursiveAction.java:160)
at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 10259 in stage 447.0 failed 4 times, most recent failure: Lost task 10259.3 in stage 447.0 (TID 1691674, machine0689.datacenter.domain.com, executor 2647): java.io.FileNotFoundException: /data4/yarn/nm/usercache/my_application/appcache/application_1535740315164_66119/blockmgr-10614d00-de24-4b2c-8bd6-2463ab4b358c/2e/temp_shuffle_6d6bae3b-d4c4-44e7-b2de-e0cdd71d35e0 (Read-only file system)
at java.io.FileOutputStream.open0(Native Method)
at java.io.FileOutputStream.open(FileOutputStream.java:270)
at java.io.FileOutputStream.<init>(FileOutputStream.java:213)
at org.apache.spark.storage.DiskBlockObjectWriter.initialize(DiskBlockObjectWriter.scala:103)
at org.apache.spark.storage.DiskBlockObjectWriter.open(DiskBlockObjectWriter.scala:116)
at org.apache.spark.storage.DiskBlockObjectWriter.write(DiskBlockObjectWriter.scala:237)
at org.apache.spark.shuffle.sort.BypassMergeSortShuffleWriter.write(BypassMergeSortShuffleWriter.java:151)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:96)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53)
at org.apache.spark.scheduler.Task.run(Task.scala:109)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
The driver stacktrace looks like:
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1602)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1590)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1589)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1589)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:831)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1823)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1772)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1761)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:642)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2034)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:194)
... 40 more
Caused by: java.io.FileNotFoundException: /data4/yarn/nm/usercache/my_application/appcache/application_1535740315164_66119/blockmgr-10614d00-de24-4b2c-8bd6-2463ab4b358c/2e/temp_shuffle_6d6bae3b-d4c4-44e7-b2de-e0cdd71d35e0 (Read-only file system)
at java.io.FileOutputStream.open0(Native Method)
at java.io.FileOutputStream.open(FileOutputStream.java:270)
at java.io.FileOutputStream.<init>(FileOutputStream.java:213)
at org.apache.spark.storage.DiskBlockObjectWriter.initialize(DiskBlockObjectWriter.scala:103)
at org.apache.spark.storage.DiskBlockObjectWriter.open(DiskBlockObjectWriter.scala:116)
at org.apache.spark.storage.DiskBlockObjectWriter.write(DiskBlockObjectWriter.scala:237)
at org.apache.spark.shuffle.sort.BypassMergeSortShuffleWriter.write(BypassMergeSortShuffleWriter.java:151)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:96)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53)
at org.apache.spark.scheduler.Task.run(Task.scala:109)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Supply below 2 properties to spark-submit-
spark.yarn.nodemanager.local-dirs=<fs path>
Spark.locak.dir=<fs path>
Read Spark WIKI for more details about these properties.
when I save pyspark Dataframe as parquet file, I got this error:
Py4JJavaError: An error occurred while calling o50.parquet.
: org.apache.spark.SparkException: Job aborted.
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:224)
at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand.run(InsertIntoHadoopFsRelationCommand.scala:154)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult$lzycompute(commands.scala:104)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult(commands.scala:102)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.doExecute(commands.scala:122)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:131)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:127)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:155)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:152)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:127)
at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:80)
at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:80)
at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:654)
at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:654)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:77)
at org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:654)
at org.apache.spark.sql.DataFrameWriter.saveToV1Source(DataFrameWriter.scala:273)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:267)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:225)
at org.apache.spark.sql.DataFrameWriter.parquet(DataFrameWriter.scala:547)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:282)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:214)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 3 in stage 1.0 failed 1 times, most recent failure: Lost task 3.0 in stage 1.0 (TID 4, localhost, executor driver): java.lang.UnsupportedOperationException: org.apache.parquet.column.values.dictionary.PlainValuesDictionary$PlainIntegerDictionary
at org.apache.parquet.column.Dictionary.decodeToLong(Dictionary.java:52)
at org.apache.spark.sql.execution.datasources.parquet.ParquetDictionary.decodeToLong(ParquetDictionary.java:36)
at org.apache.spark.sql.execution.vectorized.OnHeapColumnVector.getLong(OnHeapColumnVector.java:364)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$10$$anon$1.hasNext(WholeStageCodegenExec.scala:614)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:257)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:197)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:196)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:109)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1599)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1587)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1586)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1586)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:831)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1820)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1769)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1758)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:642)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2027)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:194)
... 31 more
Caused by: java.lang.UnsupportedOperationException: org.apache.parquet.column.values.dictionary.PlainValuesDictionary$PlainIntegerDictionary
at org.apache.parquet.column.Dictionary.decodeToLong(Dictionary.java:52)
at org.apache.spark.sql.execution.datasources.parquet.ParquetDictionary.decodeToLong(ParquetDictionary.java:36)
at org.apache.spark.sql.execution.vectorized.OnHeapColumnVector.getLong(OnHeapColumnVector.java:364)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$10$$anon$1.hasNext(WholeStageCodegenExec.scala:614)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:257)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:197)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:196)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:109)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
... 1 more
what is the reason and how can I overcome this error?
I am using Pyspark 2.3.0
The data frame has around 200 million Rows
Following is the configuration to run spark
pyspark --num-executors 20 --executor-memory 8G
--executor-cores 5 --driver-memory 10G --driver-cores 3
UnsupportedOperationException sounds like you have a version mismatch error. You should confirm that the spark version you are using is built against the same version of Hadoop you are using.
For the spark version look at what you downloaded from the spark website. They provide different binaries built for Hadoop 2.7 and Hadoop 2.6.
For the hadoop version you can run this command:
hadoop version
I am running a spark-streaming job to stream data from HDFS.
The job fails frequently once or twice a day, showing multiple errors in the log files.
I want to know, when does the spark-streaming job Fails/Exits, after so and so conditions/ retries are performed?
Exception in yarn log :-
16/05/10 02:22:35 ERROR RetryingBlockFetcher: Exception while beginning fetch of 1 outstanding blocks (after 3 retries)
java.io.IOException: Failed to connect to spark-prod-02-w-8.c.orion-0010.internal/10.240.0.255:41259
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:191)
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:156)
at org.apache.spark.network.netty.NettyBlockTransferService$$anon$1.createAndStart(NettyBlockTransferService.scala:78)
at org.apache.spark.network.shuffle.RetryingBlockFetcher.fetchAllOutstanding(RetryingBlockFetcher.java:140)
at org.apache.spark.network.shuffle.RetryingBlockFetcher.access$200(RetryingBlockFetcher.java:43)
at org.apache.spark.network.shuffle.RetryingBlockFetcher$1.run(RetryingBlockFetcher.java:170)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
at java.util.concurrent.FutureTask.run(FutureTask.java:262)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.net.ConnectException: Connection refused: spark-prod-02-w-8.c.orion-0010.internal/10.240.0.255:41259
at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method)
at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:744)
at io.netty.channel.socket.nio.NioSocketChannel.doFinishConnect(NioSocketChannel.java:208)
at io.netty.channel.nio.AbstractNioChannel$AbstractNioUnsafe.finishConnect(AbstractNioChannel.java:287)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:528)
at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:468)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:382)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354)
at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:116)
16/05/10 02:22:35 ERROR Executor: Exception in task 1.1 in stage 105394.0 (TID 762765)
java.lang.Exception: Could not compute split, block input-0-1462846937000 not found
at org.apache.spark.rdd.BlockRDD.compute(BlockRDD.scala:51)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:244)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:244)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:244)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:68)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.run(Task.scala:64)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:203)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)