Importing submodules - python-3.x

I am new to python and i m having a really bad time to overcome a problem with the importing system.
Lets say i have the file system presented below:
/src
/src/main.py
/src/submodules/
/src/submodules/submodule.py
/src/submodules/subsubmodules
/src/submodules/subsubmodules/subsubmodule.py
All the folders (src, submodules, subsubmodules) have and empty __init__.py file.
In submodule.py i have:
from subsubmodules import subsubmodule
In main.py i have:
from submodules import submodule
When i run submodule.py python accepts the import. But when i run main.py python raises error for the import of subsubmodule.py because /src/submodules/subsubmodules/ folder is not in the path.
Only solution is to change the import of submodule.py to
from submodules.subsubmodules import subsubmodule
This seems to me as an awful solution because after that i cannot run submodule.py and i m sure that something else is the key to that.
An other solution is to add the following code to the __init__.py file:
import os
import sys
import inspect
cmd_subfolder = os.path.split(inspect.getfile(inspect.currentframe()))[0]
if cmd_subfolder not in sys.path:
sys.path.insert(0, cmd_subfolder)
Is there any way to do this using just the importing system of python and not other methods that do it manually using, for example sys.path or other modules like os, inspect etc..?
How can i import modules without caring about the modules they import?

You can run subsubmodule.py as
python3 -m submodule.subsubmodules.subsubmodule
If you want a shorter way to invoke it, you're free to add a shell or Python script for that on the top level of your package.
This is how imports work in Python 3; there are reasons for that.

You can avoid this issue by using sys.path in your program.
sys.path.insert(0, './lib')
import subsubmodule
For this code, you can put all your imports to a lib folder.
You can read the official documentation on Python packages where this is explained in depth.

Related

Using python __init__.py to import common modules of multiple sripts

I have a python package i'm working on with the below structure:
package/
__init__.py
script1.py
script2.py
script3.py
all 3 scripts have common imports for example:
import sys
import socket
import subprocess
i think it would be more efficient and also 'prettier' if those common imports could be done in the __init__.py module rather being imported time after time in each script. I've tried to move those imports to the init module , but then they're no longer recognized in their respective python scripts.
What would be the best approach to unify common imports for a python package?

Sublime Text 3 + Build (ctrl + b) [duplicate]

I am running Python 2.5.
This is my folder tree:
ptdraft/
nib.py
simulations/
life/
life.py
(I also have __init__.py in each folder, omitted here for readability)
How do I import the nib module from inside the life module? I am hoping it is possible to do without tinkering with sys.path.
Note: The main module being run is in the ptdraft folder.
You could use relative imports (python >= 2.5):
from ... import nib
(What’s New in Python 2.5) PEP 328: Absolute and Relative Imports
EDIT: added another dot '.' to go up two packages
I posted a similar answer also to the question regarding imports from sibling packages. You can see it here.
Solution without sys.path hacks
Summary
Wrap the code into one folder (e.g. packaged_stuff)
Create a setup.py script where you use setuptools.setup().
Pip install the package in editable state with pip install -e <myproject_folder>
Import using from packaged_stuff.modulename import function_name
Setup
I assume the same folder structure as in the question
.
└── ptdraft
├── __init__.py
├── nib.py
└── simulations
├── __init__.py
└── life
├── __init__.py
└── life.py
I call the . the root folder, and in my case it is located in C:\tmp\test_imports.
Steps
Add a setup.py to the root folder
--
The contents of the setup.py can be simply
from setuptools import setup, find_packages
setup(name='myproject', version='1.0', packages=find_packages())
Basically "any" setup.py would work. This is just a minimal working example.
Use a virtual environment
If you are familiar with virtual environments, activate one, and skip to the next step. Usage of virtual environments are not absolutely required, but they will really help you out in the long run (when you have more than 1 project ongoing..). The most basic steps are (run in the root folder)
Create virtual env
python -m venv venv
Activate virtual env
. venv/bin/activate (Linux) or ./venv/Scripts/activate (Win)
Deactivate virtual env
deactivate (Linux)
To learn more about this, just Google out "python virtualenv tutorial" or similar. You probably never need any other commands than creating, activating and deactivating.
Once you have made and activated a virtual environment, your console should give the name of the virtual environment in parenthesis
PS C:\tmp\test_imports> python -m venv venv
PS C:\tmp\test_imports> .\venv\Scripts\activate
(venv) PS C:\tmp\test_imports>
pip install your project in editable state
Install your top level package myproject using pip. The trick is to use the -e flag when doing the install. This way it is installed in an editable state, and all the edits made to the .py files will be automatically included in the installed package.
In the root directory, run
pip install -e . (note the dot, it stands for "current directory")
You can also see that it is installed by using pip freeze
(venv) PS C:\tmp\test_imports> pip install -e .
Obtaining file:///C:/tmp/test_imports
Installing collected packages: myproject
Running setup.py develop for myproject
Successfully installed myproject
(venv) PS C:\tmp\test_imports> pip freeze
myproject==1.0
Import by prepending mainfolder to every import
In this example, the mainfolder would be ptdraft. This has the advantage that you will not run into name collisions with other module names (from python standard library or 3rd party modules).
Example Usage
nib.py
def function_from_nib():
print('I am the return value from function_from_nib!')
life.py
from ptdraft.nib import function_from_nib
if __name__ == '__main__':
function_from_nib()
Running life.py
(venv) PS C:\tmp\test_imports> python .\ptdraft\simulations\life\life.py
I am the return value from function_from_nib!
Relative imports (as in from .. import mymodule) only work in a package.
To import 'mymodule' that is in the parent directory of your current module:
import os
import sys
import inspect
currentdir = os.path.dirname(os.path.abspath(inspect.getfile(inspect.currentframe())))
parentdir = os.path.dirname(currentdir)
sys.path.insert(0, parentdir)
import mymodule
edit: the __file__ attribute is not always given. Instead of using os.path.abspath(__file__) I now suggested using the inspect module to retrieve the filename (and path) of the current file
It seems that the problem is not related to the module being in a parent directory or anything like that.
You need to add the directory that contains ptdraft to PYTHONPATH
You said that import nib worked with you, that probably means that you added ptdraft itself (not its parent) to PYTHONPATH.
You can use OS depending path in "module search path" which is listed in sys.path .
So you can easily add parent directory like following
import sys
sys.path.insert(0,'..')
If you want to add parent-parent directory,
sys.path.insert(0,'../..')
This works both in python 2 and 3.
Don't know much about python 2.
In python 3, the parent folder can be added as follows:
import sys
sys.path.append('..')
...and then one is able to import modules from it
If adding your module folder to the PYTHONPATH didn't work, You can modify the sys.path list in your program where the Python interpreter searches for the modules to import, the python documentation says:
When a module named spam is imported, the interpreter first searches for a built-in module with that name. If not found, it then searches for a file named spam.py in a list of directories given by the variable sys.path. sys.path is initialized from these locations:
the directory containing the input script (or the current directory).
PYTHONPATH (a list of directory names, with the same syntax as the shell variable PATH).
the installation-dependent default.
After initialization, Python programs can modify sys.path. The directory containing the script being run is placed at the beginning of the search path, ahead of the standard library path. This means that scripts in that directory will be loaded instead of modules of the same name in the library directory. This is an error unless the replacement is intended.
Knowing this, you can do the following in your program:
import sys
# Add the ptdraft folder path to the sys.path list
sys.path.append('/path/to/ptdraft/')
# Now you can import your module
from ptdraft import nib
# Or just
import ptdraft
Here is an answer that's simple so you can see how it works, small and cross-platform.
It only uses built-in modules (os, sys and inspect) so should work
on any operating system (OS) because Python is designed for that.
Shorter code for answer - fewer lines and variables
from inspect import getsourcefile
import os.path as path, sys
current_dir = path.dirname(path.abspath(getsourcefile(lambda:0)))
sys.path.insert(0, current_dir[:current_dir.rfind(path.sep)])
import my_module # Replace "my_module" here with the module name.
sys.path.pop(0)
For less lines than this, replace the second line with import os.path as path, sys, inspect,
add inspect. at the start of getsourcefile (line 3) and remove the first line.
- however this imports all of the module so could need more time, memory and resources.
The code for my answer (longer version)
from inspect import getsourcefile
import os.path
import sys
current_path = os.path.abspath(getsourcefile(lambda:0))
current_dir = os.path.dirname(current_path)
parent_dir = current_dir[:current_dir.rfind(os.path.sep)]
sys.path.insert(0, parent_dir)
import my_module # Replace "my_module" here with the module name.
It uses an example from a Stack Overflow answer How do I get the path of the current
executed file in Python? to find the source (filename) of running code with a built-in tool.
from inspect import getsourcefile
from os.path import abspath
Next, wherever you want to find the source file from you just use:
abspath(getsourcefile(lambda:0))
My code adds a file path to sys.path, the python path list
because this allows Python to import modules from that folder.
After importing a module in the code, it's a good idea to run sys.path.pop(0) on a new line
when that added folder has a module with the same name as another module that is imported
later in the program. You need to remove the list item added before the import, not other paths.
If your program doesn't import other modules, it's safe to not delete the file path because
after a program ends (or restarting the Python shell), any edits made to sys.path disappear.
Notes about a filename variable
My answer doesn't use the __file__ variable to get the file path/filename of running
code because users here have often described it as unreliable. You shouldn't use it
for importing modules from parent folder in programs used by other people.
Some examples where it doesn't work (quote from this Stack Overflow question):
• it can't be found on some platforms • it sometimes isn't the full file path
py2exe doesn't have a __file__ attribute, but there is a workaround
When you run from IDLE with execute() there is no __file__ attribute
OS X 10.6 where I get NameError: global name '__file__' is not defined
Here is more generic solution that includes the parent directory into sys.path (works for me):
import os.path, sys
sys.path.append(os.path.join(os.path.dirname(os.path.realpath(__file__)), os.pardir))
The pathlib library (included with >= Python 3.4) makes it very concise and intuitive to append the path of the parent directory to the PYTHONPATH:
import sys
from pathlib import Path
sys.path.append(str(Path('.').absolute().parent))
In a Jupyter Notebook (opened with Jupyter LAB or Jupyter Notebook)
As long as you're working in a Jupyter Notebook, this short solution might be useful:
%cd ..
import nib
It works even without an __init__.py file.
I tested it with Anaconda3 on Linux and Windows 7.
I found the following way works for importing a package from the script's parent directory. In the example, I would like to import functions in env.py from app.db package.
.
└── my_application
└── alembic
└── env.py
└── app
├── __init__.py
└── db
import os
import sys
currentdir = os.path.dirname(os.path.realpath(__file__))
parentdir = os.path.dirname(currentdir)
sys.path.append(parentdir)
Above mentioned solutions are also fine. Another solution to this problem is
If you want to import anything from top level directory. Then,
from ...module_name import *
Also, if you want to import any module from the parent directory. Then,
from ..module_name import *
Also, if you want to import any module from the parent directory. Then,
from ...module_name.another_module import *
This way you can import any particular method if you want to.
Two line simplest solution
import os, sys
sys.path.insert(0, os.getcwd())
If parent is your working directory and you want to call another child modules from child scripts.
You can import all child modules from parent directory in any scripts and execute it as
python child_module1/child_script.py
For me the shortest and my favorite oneliner for accessing to the parent directory is:
sys.path.append(os.path.dirname(os.getcwd()))
or:
sys.path.insert(1, os.path.dirname(os.getcwd()))
os.getcwd() returns the name of the current working directory, os.path.dirname(directory_name) returns the directory name for the passed one.
Actually, in my opinion Python project architecture should be done the way where no one module from child directory will use any module from the parent directory. If something like this happens it is worth to rethink about the project tree.
Another way is to add parent directory to PYTHONPATH system environment variable.
Though the original author is probably no longer looking for a solution, but for completeness, there one simple solution. It's to run life.py as a module like this:
cd ptdraft
python -m simulations.life.life
This way you can import anything from nib.py as ptdraft directory is in the path.
I think you can try this in that specific example, but in python 3.6.3
import sys
sys.path.append('../')
same sort of style as the past answer - but in fewer lines :P
import os,sys
parentdir = os.path.dirname(__file__)
sys.path.insert(0,parentdir)
file returns the location you are working in
In a Linux system, you can create a soft link from the "life" folder to the nib.py file. Then, you can simply import it like:
import nib
I have a solution specifically for git-repositories.
First I used sys.path.append('..') and similar solutions. This causes especially problems if you are importing files which are themselves importing files with sys.path.append('..').
I then decided to always append the root directory of the git repository. In one line it would look like this:
sys.path.append(git.Repo('.', search_parent_directories=True).working_tree_dir)
Or in more details like this:
import os
import sys
import git
def get_main_git_root(path):
main_repo_root_dir = git.Repo(path, search_parent_directories=True).working_tree_dir
return main_repo_root_dir
main_repo_root_dir = get_main_git_root('.')
sys.path.append(main_repo_root_dir)
For the original question: Based on what the root directory of the repository is, the import would be
import ptdraft.nib
or
import nib
Our folder structure:
/myproject
project_using_ptdraft/
main.py
ptdraft/
__init__.py
nib.py
simulations/
__init__.py
life/
__init__.py
life.py
The way I understand this is to have a package-centric view.
The package root is ptdraft, since it's the top most level that contains __init__.py
All the files within the package can use absolute paths (that are relative to package root) for imports, for example
in life.py, we have simply:
import ptdraft.nib
However, to run life.py for package dev/testing purposes, instead of python life.py, we need to use:
cd /myproject
python -m ptdraft.simulations.life.life
Note that we didn't need to fiddle with any path at all at this point.
Further confusion is when we complete the ptdraft package, and we want to use it in a driver script, which is necessarily outside of the ptdraft package folder, aka project_using_ptdraft/main.py, we would need to fiddle with paths:
import sys
sys.path.append("/myproject") # folder that contains ptdraft
import ptdraft
import ptdraft.simulations
and use python main.py to run the script without problem.
Helpful links:
https://tenthousandmeters.com/blog/python-behind-the-scenes-11-how-the-python-import-system-works/ (see how __init__.py can be used)
https://chrisyeh96.github.io/2017/08/08/definitive-guide-python-imports.html#running-package-initialization-code
https://stackoverflow.com/a/50392363/2202107
https://stackoverflow.com/a/27876800/2202107
Work with libraries.
Make a library called nib, install it using setup.py, let it reside in site-packages and your problems are solved.
You don't have to stuff everything you make in a single package. Break it up to pieces.
I had a problem where I had to import a Flask application, that had an import that also needed to import files in separate folders. This is partially using Remi's answer, but suppose we had a repository that looks like this:
.
└── service
└── misc
└── categories.csv
└── test
└── app_test.py
app.py
pipeline.py
Then before importing the app object from the app.py file, we change the directory one level up, so when we import the app (which imports the pipeline.py), we can also read in miscellaneous files like a csv file.
import os,sys,inspect
currentdir = os.path.dirname(os.path.abspath(inspect.getfile(inspect.currentframe())))
parentdir = os.path.dirname(currentdir)
sys.path.insert(0,parentdir)
os.chdir('../')
from app import app
After having imported the Flask app, you can use os.chdir('./test') so that your working directory is not changed.
It's seems to me that you don't really need to import the parent module. Let's imagine that in nib.py you have func1() and data1, you need to use in life.py
nib.py
import simulations.life.life as life
def func1():
pass
data1 = {}
life.share(func1, data1)
life.py
func1 = data1 = None
def share(*args):
global func1, data1
func1, data1 = args
And now you have the access to func1 and data in life.py. Of course you have to be careful to populate them in life.py before you try to use them,
I made this library to do this.
https://github.com/fx-kirin/add_parent_path
# Just add parent path
add_parent_path(1)
# Append to syspath and delete when the exist of with statement.
with add_parent_path(1):
# Import modules in the parent path
pass
This is the simplest solution that works for me:
from ptdraft import nib
After removing some sys path hacks, I thought it might be valuable to add
My preferred solution.
Note: this is a frame challenge - it's not necessary to do in-code.
Assuming a tree,
project
└── pkg
└── test.py
Where test.py contains
import sys, json; print(json.dumps(sys.path, indent=2))
Executing using the path only includes the package directory
python pkg/test.py
[
"/project/pkg",
...
]
But using the module argument includes the project directory
python -m pkg.test
[
"/project",
...
]
Now, all imports can be absolute, from the project directory. No further skullduggery required.
Although it is against all rules, I still want to mention this possibility:
You can first copy the file from the parent directory to the child directory. Next import it and subsequently remove the copied file:
for example in life.py:
import os
import shutil
shutil.copy('../nib.py', '.')
import nib
os.remove('nib.py')
# now you can use it just fine:
nib.foo()
Of course there might arise several problems when nibs tries to import/read other files with relative imports/paths.
This works for me to import things from a higher folder.
import os
os.chdir('..')

Problem importing python file from folder above

I know theres heaps of questions and answers for this, I tried multitude stackoverflow links but none of these seem to help.
My project structure is:
volume_price_analysis/
README.md
TODO.md
build/
docs/
requirements.txt
setup.py
vpa/
__init__.py
database_worker.py
utils.py
test/
__init__.py
test_utils.py
input/
input_file.txt
I want to load utils.py inside test_utils.py
my test_utils.py is:
import unittest
import logging
import os
from .vpa import utils
class TestUtils(unittest.TestCase):
def test_read_file(self):
input_dir = os.path.join(os.path.join(os.getcwd()+"/test/input"))
file_name = "input_file.txt"
with open(os.path.join(input_dir+"/"+file_name)) as f:
file_contents = f.read()
f.close()
self.assertEqual(file_contents, "Hello World!\n")
if __name__ == '__main__':
unittest.main()
I want to run (say inside test folder):
python3 -m test_utils.py
I can not do that, I get a bunch of errors regarding imports of utils (tried many iterations of . , no ., from this import that etc.. etc..
Why is this so bloody complicated?
I am using Python 3.7 if that helps.
As per this answer, you can do it using importlib,
in spec = importlib.util.spec_from_file_location("module.name", "/path/to/file.py") ,instead of path/to/file, you can use ../utils.py. Also, since you are already importing a package named utils (from importlib), you should call one of them by other name, ie. dont keep module.name as utils or import importlib.utils as something else.
I figured it out, turns out python prefers you to run your code from top level folder, in my case volume_price_analysis folder, all I had to do was make a shell script that calls
python3 -m unittest vpa.test.test_utils
And inside test_utils I can import whatever I want as long as I remember that I am executing the code from main folder so loading utils.py would be
from vpa import utils inside test_utils

AttributeError when packaging python library

I'm in the process of learning how to package a python library using the official guide. I've started cloning the minimal sample package suggested in the guide here. I've then added the file my_module.py inside the folder sampleproject storing a simple power function. Another function is also stored in /sampleproject/sampleproject/__init__.py. The resulting structure of the library is the following
Finally, I've used pip to successfully install the package in the interpreter. The only thing left is to make sure that I'm able to run the functions stored in the subfolder sampleproject.
import sampleproject
sampleproject.main()
# Output
"Call your main application code here"
This is great. The package is able to run the function in __init__.py. However, the package is not able to find module.py:
import sampleproject
sampleproject.module
# Output
AttributeError: module 'sampleproject' has no attribute 'module'
I've tried to add __init__.py in the main folder and to change the settings in entry_points in setup.py without success. What should I let sampleproject to be able to find the function in module.py?
Your sampleproject.module is a function you would like to execute?
In this case, do as for the sampleproject, add () to execute it:
sampleproject.module()
Otherwise, you can import your package like this:
import sampleproject.module
or:
from sampleproject import module
To be clearer, you would have to import module in your sampleproject __init__.py. Then, when you want to use the package, import it (is some py file at root):
import sampleproject # is enough as it's going to import everything you stated in __init__.py
After that, you can start to use what's in the package you imported with maybe module() if you have a function called module in your package.
init.py discussions
it seems,
you are in sampleproject->module.py
so you need to try,
from sampleproject import module

ModuleNotFoundError: No module named '__main__.xxxx'; '__main__' is not a package

Currently trying to work in Python3 and use absolute imports to import one module into another but I get the error ModuleNotFoundError: No module named '__main__.moduleB'; '__main__' is not a package. Consider this project structure:
proj
__init__.py3 (empty)
moduleA.py3
moduleB.py3
moduleA.py3
from .moduleB import ModuleB
ModuleB.hello()
moduleB.py3
class ModuleB:
def hello():
print("hello world")
Then running python3 moduleA.py3 gives the error. What needs to be changed here?
.moduleB is a relative import. Relative only works when the parent module is imported or loaded first. That means you need to have proj imported somewhere in your current runtime environment. When you are are using command python3 moduleA.py3, it is getting no chance to import parent module. You can:
from proj.moduleB import moduleB OR
You can create another script, let's say run.py, to invoke from proj import moduleA
Good luck with your journey to the awesome land of Python.
Foreword
I'm developing a project which in fact is a Python package that can be installed through pip, but it also exposes a command line interface. I don't have problems running my project after installing it with pip install ., but hey, who does this every time after changing something in one of the project files? I needed to run the whole thing through simple python mypackage/main.py.
/my-project
- README.md
- setup.py
/mypackage
- __init__.py
- main.py
- common.py
The different faces of the same problem
I tried importing a few functions in main.py from my common.py module. I tried different configurations that gave different errors, and I want to share with you with my observations and leave a quick note for future me as well.
Relative import
The first what I tried was a relative import:
from .common import my_func
I ran my application with simple: python mypackage/main.py. Unfortunately this gave the following error:
ModuleNotFoundError: No module named '__main__.common'; '__main__' is not a package
The cause of this problem is that the main.py was executed directly by python command, thus becoming the main module named __main__. If we connect this information with the relative import we used, we get what we have in the error message: __main__.common. This is explained in the Python documentation:
Note that relative imports are based on the name of the current module. Since the name of the main module is always __main__, modules intended for use as the main module of a Python application must always use absolute imports.
When I installed my package with pip install . and then ran it, it worked perfectly fine. I was also able to import mypackage.main module in a Python console. So it looks like there's a problem only with running it directly.
Absolute import
Let's follow the advise from the documentation and change the import statement to something different:
from common import my_func
If we now try to run this as before: python mypackage/main.py, then it works as expected! But, there's a caveat when you, like me, develop something that need to work as a standalone command line tool after installing it with pip. I installed my package with pip install . and then tried to run it...
ModuleNotFoundError: No module named 'common'
What's worse, when I opened a Python console, and tried to import the main module manually (import mypackage.main), then I got the same error as above. The reason for that is simple: common is no longer a relative import, so Python tries to find it in installed packages. We don't have such package, that's why it fails.
The solution with an absolute import works well only when you create a typical Python app that is executed with a python command.
Import with a package name
There is also a third possibility to import the common module:
from mypackage.common import my_func
This is not very different from the relative import approach, as long as we do it from the context of mypackage. And again, trying to run this with python mypackage/main.py ends similar:
ModuleNotFoundError: No module named 'mypackage'
How irritating that could be, the interpreter is right, you don't have such package installed.
The solution
For simple Python apps
Just use absolute imports (without the dot), and everything will be fine.
For installable Python apps in development
Use relative imports, or imports with a package name on the beginning, because you need them like this when your app is installed. When it comes to running such module in development, Python can be executed with the -m option:
-m mod : run library module as a script (terminates option list)
So instead of python mypackage/main.py, do it like this: python -m mypackage.main.
In addition to md-sabuj-sarker's answer, there is a really good example in the Python modules documentation.
This is what the docs say about intra-package-references:
Note that relative imports are based on the name of the current module. Since the name of the main module is always "__main__", modules intended for use as the main module of a Python application must always use absolute imports.
If you run python3 moduleA.py3, moduleA is used as the main module, so using the absolute import looks like the right thing to do.
However, beware that this absolute import (from package.module import something) fails if, for some reason, the package contains a module file with the same name as the package (at least, on my Python 3.7). So, for example, it would fail if you have (using the OP's example):
proj/
__init__.py (empty)
proj.py (same name as package)
moduleA.py
moduleB.py
in which case you would get:
ModuleNotFoundError: No module named 'proj.moduleB'; 'proj' is not a package
Alternatively, you could remove the . in from .moduleB import, as suggested here and here, which seems to work, although my PyCharm (2018.2.4) marks this as an "Unresolved reference" and fails to autocomplete.
Maybe you can do this before importing the module:
moduleA.py3
import os
import sys
sys.path.append(os.path.dirname(os.path.abspath(__file__)))
from moduleB import ModuleB
ModuleB.hello()
Add the current directory to the environment directory
Just rename the file from where you run the app to main.py:
from app import app
if __name__ == '__main__':
app.run()
import os
import sys
sys.path.append(os.path.dirname(os.path.abspath(__file__)))
will solve the issue of import path issue.

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