Basically in python 3.0 I tried to use two %s string substitutes and concatenate it. However, it seems to produce an error.
CODE
print "%s"+"%s" %("John", "rows")
I am new to programming so I would be thankful if I could get a simple explanation.
Thanks
In python-2.x, which appears to be the language that line of code was written in (you treated print as a statement), you will get an error TypeError: not all arguments converted during string formatting.
This is because the interpreter attempts to put both of the arguments into the latter string, due to the order of operations. Thus, simply wrap the string with parentheses and the code will run:
>>> print ("%s"+"%s") %("John", "rows")
Johnrows
>>>
Related
I want to write out some data into a file. I saved the filename as a variable. I wan to use % mode to substitude the variable to the text, but it gives an error:
IndentationError: unindent does not match any outer indentation level
writeafile = open('N:\myfile\%s.txt' , "a") % (variable)
Assuming we are talking about Python here, you should move variable next to the
'N:\\myfile\\%s.txt' string for correct syntax, like so:
writeafile = open("N:\\myfile\\%s.txt" % variable, "a")
However, using this style of formatting is not recommended by Pydocs:
The formatting operations described here exhibit a variety of quirks that lead to a number of common errors (such as failing to display tuples and dictionaries correctly). Using the newer formatted string literals, the str.format() interface, or template strings may help avoid these errors. Each of these alternatives provides their own trade-offs and benefits of simplicity, flexibility, and/or extensibility.
Source
So, I'd suggest using f-strings, which have been available in Python since 3.6. The double \\ is intentional here, otherwise Python will treat it as an escape character and you'll get undesired results.
writeafile = open(f"N:\\myfile\\{variable}.txt", "a")
Alternatively, you could also use str.format():
writeafile = open("N:\\myfile\\{name}.txt".format(name=variable), "a")
Trying to understand how "%s%s" %(a,a) is working in below code I have only seen it inside print function thus far.Could anyone please explain how it is working inside int()?
a=input()
b=int("%s%s" %(a,a))
this "%s" format has been borrowed from C printf format, but is much more interesting because it doesn't belong to print statement. Note that it involves just one argument passed to print (or to any function BTW):
print("%s%s" % (a,a))
and not (like C) a variable number of arguments passed to some functions that accept & understand them:
printf("%s%s,a,a);
It's a standalone way of creating a string from a string template & its arguments (which for instance solves the tedious issue of: "I want a logger with formatting capabilities" which can be achieved with great effort in C or C++, using variable arguments + vsprintf or C++11 variadic recursive templates).
Note that this format style is now considered legacy. Now you'd better use format, where the placeholders are wrapped in {}.
One of the direct advantages here is that since the argument is repeated you just have to do:
int("{0}{0}".format(a))
(it references twice the sole argument in position 0)
Both legacy and format syntaxes are detailed with examples on https://pyformat.info/
or since python 3.6 you can use fstrings:
>>> a = 12
>>> int(f"{a}{a}")
1212
% is in a way just syntactic sugar for a function that accepts a string and a *args (a format and the parameters for formatting) and returns a string which is the format string with the embedded parameters. So, you can use it any place that a string is acceptable.
BTW, % is a bit obsolete, and "{}{}".format(a,a) is the more 'modern' approach here, and is more obviously a string method that returns another string.
I've started work on a Variable banner program, and I've hit a "phantom" syntax error.
name = input('Type here: ')
namelist = list(namelist)
print(namelist)
length_of_name=len(namelist)
asterisk=('*')
for length_of_name:
print (asterisk)
it throws up a syntax error, as I mentioned, but can anyone spot what I did wrong?
The SyntaxError is coming from your for statement. A for statement has to look like for variable in sequence_object:. Here sequence_object is any type that can be iterated, such as a list or tuple, but in your particular case for i in range(0,length_of_name): will make the code syntactically correct. But don't use this because there is a faster way which makes exactly the same output.
Instead of printing a single character in a loop, set asterisk to '*\n' and use print(asterisk*length_of_name, end=''). This prints the same output as the for loop but this multiplies the asterisk character by an integer to make a string that is repeated that many times. That way, you only print once. Setting end to an empty string ensures that a blank line is not printed.
I am parsing a .fasta-File containing one big sequence into python by using:
for rec in SeqIO.parse(faFile, "fasta"):
identifier=(rec.id)
sequence=(rec.seq)
Then, I am building a dictionary:
d={identifier:sequence}
When printing sequence only, I get the following result:
CAGCCAGATGGGGGGAGGGGTGAGCGCTCTCCCGCTCAAAACCTCCAGCACTTT...CAT
Note: All letters are printed, I made dots to shorten this
When printing the dictionary, I get:
{'NC_003047.1': Seq('CAGCCAGATGGGGGGAGGGGTGAGCGCTCTCCCGCTCAAAACCTCCAGCACTTT...CAT', SingleLetterAlphabet())}
Where does the "Seq" and the SingleLetter alphabet come from?
Desired result would be:
{'NC_003047.1':'CAGCCAGATGGGGGGAGGGGTGAGCGCTCTCCCGCTCAAAACCTCCAGCACTTT...CAT'}
Update1:
following the link in the comments, I tried
input_file=open(faFile)
d=SeqIO.to_dict(SeqIO.parse(faFile,"fasta"))
resulting in:
{'NC_003047.1': SeqRecord(seq=Seq('CAGCCAGATGGGGGGAGGGGTGAGCGCTCTCCCGCTCAAAACCTCCAGCACTTT...CAT', SingleLetterAlphabet()), id='NC_003047.1', name='NC_003047.1', description='NC_003047.1 Sinorhizobium meliloti 1021 chromosome, complete genome', dbxrefs=[])}
So, sadly, this does not help :(
Thanks in advance for your time and effort :)
SeqIO doesn't return a string, it returns an object. When you print it, you print the object's string representation, which in this case is not just the data contained in (some attribute of) the object.
(Some objects are designed so that printing the object will print just the data inside it. This depends on how the library is put together and how the programmer designed its __str__() method. This is probably not useful for you at this point, but might help you understand other related resources you find if you pursue this further.)
I'm not familiar with SeqIO but quick googling suggests you probably want
d={identifier: sequence.seq}
to put just the SeqIO object's seq attribute as the value for this identifier.
this is my first time asking a question so let me know if I am doing something wrong (post wise)
I am trying to create a function that writes into a .txt but i seem to get two very different results between calling it from within a module, and writing the same loop in the shell directly. The code is as follows:
def function(para1, para2): #para1 is a string that i am searching for within para2. para2 is a list of strings
with open("str" + para1 +".txt", 'a'. encoding = 'utf-8') as file:
#opens a file with certain naming convention
n = 0
for word in para2:
if word == para1:
file.write(para2[n-1]+'\n')
print(para2[n-1]) #intentionally included as part of debugging
n+=1
function("targetstr". targettext)
#target str is the phrase I am looking for, targettext is the tokenized text I am
#looking through. this is in the form of a list of strings, that is the output of
#another function, and has already been 'declared' as a variable
when I define this function in the shell, I get the correct words appearing. However, when i call this same function through a module(in the shell), nothing appears in the shell, and the text file shows a bunch of numbers (eg: 's93161), and no new lines.
I have even gone to the extent of including a print statement right after declaration of the function in the module, and commented everything but the print statement, and yet nothing appears in the shell when I call it. However, the numbers still appear in the text file.
I am guessing that there is a problem with how I have defined the parameters or how i cam inputting the parameters when I call the function.
As a reference, here is the desired output:
‘She
Ashley
there
Kitty
Coates
‘Let
let
that
PS: Sorry if this is not very clear as I have very limited knowledge on speaking python
I have found the solution to issue. Turns out that I need to close the shell and restart everything before the compiler recognizes the changes made to the function in the module. Thanks to those who took a look at the issue, and those who tried to help.