Trying to install fftw to use GADGET2, and after running the following command:
./configure --enable-mpi --enable-type-prefix --enable-float
I get the message:
checking for mpicc... mpicc
checking for MPI_Init... no
checking for MPI_Init in -lmpi... no
checking for MPI_Init in -lmpich... no
configure: error: couldn't find mpi library for --enable-mpi
Now I have installed openMPI already, so it seems to be the case that it just can't find it. There was a similar question posted a while ago with different mpi software. I think the problem is that my openMPI and other compilers might be in different folders? This brings me to a more general question (I have tried googling this but can't find anything that explains it well):
If I extract a tar and use ./configure without any prefix, where will the program install to? And is this is an issue that my openMPI has for some reason installed to a different place?
Thanks!
edit: found a solution for this from this question, where just running
sudo ldconfig
seemed to fix it and now it compiles fine.
Related
If you have an answer for this, or further information, I'd welcome it. I'm following advice from here, to offer some unsolicited help by posting this question then an answer I've already found for it.
I have a bare-metal ARM board for which I'm building a cross-toolchain, from sources for GNU binutils, gcc and gdb, and for SourceWare's Newlib. I got those four working and cross-built a DoNothing.c into an ELF file - but I couldn't disassemble it with this:
$ arm-none-eabi-objdump -S DoNothing.elf
The error was:
$ arm-none-eabi-objdump: error while loading shared libraries: libdebuginfod.so.1: cannot open shared object file: No such file or directory
I'll follow up with a solution.
The error was correct - my system didn't have libdebuginfod.so.1 installed - but I have another cross-binutils, installed from binary for a different target, and its objdump -S works fine on the same host. Why would one build of objdump complain about missing that shared library, when clearly not all builds of objdump need it?
First I tried rebuilding cross binutils, specifying --without-debuginfod as a configure option. No change, which seems odd: surely that should build tools that not only don't use debuginfod but which don't depend on it in any way. (If someone can answer that, or point out what I've misunderstood, it may help people.)
Next I figured debuginfod was inescapable (for my cross-tools built from source at least), so I'd install it to get rid of the error. It's a component of the elfutils package, but installing the latest elfutils available for my Ubuntu 20.04 system didn't bring libdebuginfod.so.1 with it.
I found a later one, for Arch Linux, whose package contents suggested it would - but its package format doesn't match Ubuntu's and installing it was going to involve a lot of work. Instead I opted to build it from the Arch Linux source package. However, running ./configure on that gave a couple of infuriatingly similar errors:
configure: checking libdebuginfod dependencies, --disable-libdebuginfod or --enable-libdebuginfo=dummy to skip
...
configure: error: dependencies not found, use --disable-libdebuginfod to disable or --enable-libdebuginfod=dummy to build a (bootstrap) dummy library.
No combination of those suggestions would allow configure for elfutils-0.182 to run to completion.
The problem of course was my own lack of understanding. The solution came from the Linux From Scratch project: what worked was to issue configure with both of the suggested options, like this:
$ ./configure --prefix=/usr \
--disable-debuginfod \
--enable-libdebuginfod=dummy \
--libdir=/lib
That gave a clean configure; make worked first time, as did make check and then sudo make install which of course installed libdebuginfod.so.1 as required. I then had an arm-none-eabi-objdump which disassembles cross-compiled ELF files without complaining.
I am trying to install the MPI FFTW2 libraries (fftw2.1.5) as I need them for a program that only works with that version. The specific library I need is "drfftw_mpi.h" so I try the followed:
./configure --enable-mpi --enable-type-prefix
But it always gives me the following error:
configure: error: couldn't find mpi library for --enable-mpi
In a previous question they solve it by running sudo ldconfig before, but for me it does not work giving the same error. For other mpi software they solve it in this post by passing mpicc as the right compiler to ./configure, with the CC flag CC=mpicc, something that does not work for me.
I have installed Open MPI version 4.0.3 on a Ubuntu 20.04 LTS, and when --enable-mpi is not used I was able to install "dfftw.h" "drfftw.h" "fftw.h" and "rfftw.h", do you have an idea of what I am doing wrong or what should I do to install "drfftw_mpi.h"?
I'm trying to install gcc4.9 on a SUSE system without an internet connection. I compiled gcc on an Ubuntu machine and installed it into a prefix, then copied the prefix folder to the SUSE machine. When I tried to run it gcc complained about not finding GLIBC_2_14, so I downloaded an rpm for libc6 online and included it into the prefix folders. my LD_LIBRARY_PATH includes prefix/lib and prefix/lib64. When I try to run any program now (ls, cp, cat, etc) I get the error error while loading shared libraries: /home/***/prefix/lib64/libc.so.6: unexpected reloc type 0x25.
Is there any way I can fix this so that I can get gcc4.9 up and running on this system?
As an alternative, is it possible to build gcc staticaly so that I don't have to worry about linking at all when I transfer it between computers?
my LD_LIBRARY_PATH includes prefix/lib and prefix/lib64
See this answer for explanation of why this can't work.
Is there any way I can fix this so that I can get gcc4.9 up and running on this system?
Your best bet is to install whatever GCC package comes with the SuSE system, then use that GCC to configure and install gcc-4.9 on it.
If for some reason you can't do that, this answer has some of the ways in which you can build gcc-4.9 on a newer system and have it still work on an older one.
is it possible to build gcc staticaly so that I don't have to worry about linking at all when I transfer it between computers?
Contrary to popular belief, fully-static binaries are generally less portable then dynamic ones on Linux.
I'm attempting to compile a relatively simple Fortran executable so that it can be passed around to other Windows users that don't have Cygwin (or something of the sort) installed, however, I'm unable to get the executable to operate as a standalone. I've tried gfortran -static file.f and gfortran -static-libgfortran file.f, however other users always encounter this error:
The program can’t start because cygwin1.dll is missing from your computer. Try reinstalling the program to fix this problem.
From what I've read online (e.g. here), the -static option should be sufficient. I have verified that running the executable from my machine (DOS prompt) does work.
I have gcc (gfortran) version 4.7.3. I should also point out this is my first attempt at compiling portable Fortran.
Update
After realizing that this isn't a gfortran-specific issue (thanks to replies here), searches led me to related posts here and here
This is partially explained in the Cygwin FAQ. The solution is to install the mingw64-i686-gcc-fortran package with its dependencies, and cross-compile your code with i686-w64-mingw32-gfortran -static.
Just package the cygwin1.dll along with your binary file (both in the same folder) then it will run just fine.
I am trying to compile a library using android-ndk-r5 standalone toolchain and autotools. When doing a ./configure, it fails with:
$ ./configure --host=arm-linux-androideabi
...snip...
checking host system type... Invalid configuration `arm-linux-androideabi': system `androideabi' not recognized
configure: error: /bin/sh ./config.sub arm-linux-androideabi failed
Explicitly setting CC and CXX does not work either (configure says to use --host).
The NDK docs and various materials online seems to indicate that using the standalone toolchain in this manner should be possible. What is wrong here? and how can I resolve it? (besides simply ditching autoconf and going back to Android.mk)
You might need a newer config.sub and config.guess, 2010-05-20 or later.
You can get the newer config.sub and config.guess from here
I took the newest from both, but that lead to errors, so I took the mentioned ones of Peter Eisentraut's date.
You can also grab config.sub and config.guess from the Ubuntu autotools-dev package:
sudo apt-get install autotools-dev
cp /usr/share/misc/config.{sub,guess} .