Python- how to install pyvttbl in jupyter notebook - python-3.x

I tried installing it using !pip install
!pip install pyvttbl
and it gives me this message
Requirement already satisfied: pyvttbl
Requirement already satisfied: dictset
Requirement already satisfied: pystaggrelite3
However, when I import it as
import pyvttbl as pt
it gives me
ModuleNotFoundError Traceback (most recent call last)
<ipython-input-7-89ef5f67d382> in <module>()
----> 1 import pyvttbl as pt
D:\Anaconda3\lib\site-packages\pyvttbl\__init__.py in <module>()
8 # This software is funded in part by NIH Grant P20 RR016454.
9
---> 10 from base import PyvtTbl, DataFrame
11
12 from misc import *
ModuleNotFoundError: No module named 'base'
When I try to install base as
!pip install base
it gives me this
Collecting base
Using cached base-1.0.4.tar.gz
Complete output from command python setup.py egg_info:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\User\AppData\Local\Temp\pip-build-u1xkw0lp\base\setup.py", line 40, in <module>
LONG_DESCRIPTION = read("README.rst")
File "C:\Users\User\AppData\Local\Temp\pip-build-u1xkw0lp\base\setup.py", line 21, in read
return codecs.open(os.path.join(os.path.dirname(__file__), fname)).read()
File "D:\Anaconda3\lib\encodings\cp1252.py", line 23, in decode
return codecs.charmap_decode(input,self.errors,decoding_table)[0]
UnicodeDecodeError: 'charmap' codec can't decode byte 0x81 in position 5: character maps to <undefined>
Can someone help me understand the problem?

Background
Pyvttbl is no longer actively maintained which is why you are having some difficulty.
I assume that you are using python 3.x and it seems to me that pyvttbl will only work for python 2.7 right now.
Solution
NOTE: only applies to systems running jupyter notebook through Anaconda.
I managed to get this to work in my python 2.7 environment. However I could not reproduce a working install for in a new env. So I exported my py27 env as a .yml file that you can clone through these steps;
1) Download and unzip the .yml env from this gist
2) cd to the location of the unzipped .yml file.
3) Create the clone of my py27 env using the following command;
conda env create -f py27.yml
4) Once conda finishes the install then activate the env;
activate py27
5) Then this env to your list of jupyter notebook kernels with the following;
ipython kernel install --name py27
Now when you start jupyter notebook you can choose to create a py27 notebook when you click the new button. After that you should be able to run pyttbl.
Please comment below if you are still having issues.

Related

64bit MacOs After succesfully installing Pygame: ModuleNotFoundError: No module named 'pygame'

Python noob here. I've been trying to install pygame and pandas for a few hours now. Even with Conda I did not succeed. I have Python 3.8.5 installed.
I eventually tried through the terminal with these commands:
python -m pip install pygame==2.0.0.dev6
and
python -m pip install pandas
(this was a total guess by the way, but apparently it did something)
Results were succesfull:
Requirement already satisfied: pygame==2.0.0.dev6 in /opt/miniconda3/lib/python3.8/site-packages (2.0.0.dev6)
and
Successfully installed numpy-1.19.2 pandas-1.1.2 python-dateutil-2.8.1 pytz-2020.1
But, when I try to import either modules, I still get errors. Any ideas?
import pygame
Traceback (most recent call last):
File "<pyshell#1>", line 1, in <module>
import pygame
ModuleNotFoundError: No module named 'pygame'
import pandas
Traceback (most recent call last):
File "<pyshell#2>", line 1, in <module>
import pandas
ModuleNotFoundError: No module named 'pandas'
Do I need to move the modules to the script folder or something? Or what do I even move? Thanks!
Ok.. Got it thanks to #matt.. after succesfully installing pygame, find the environment in which pygame is installed by entering 'which python'.
In my case it returned:
/opt/miniconda3/bin/python
Now I needed to make sure the VS console was pointing at the same environment, by checking which python interpreter it was using and selecting the correct one. More info:
how to check and change environment in VS Code

I tried pip installing spyder terminal in windows and now spyder 4.1.3 won't open

I have used matlab, but I am only 2 weeks into Python. I downloaded anaconda 3.7 and am using spyder 4.1.3. I was following a youtube tutorial on python. I was doing well until the guy access the cmd prompt (I use Windows 10) from within his IDE.
I didn't know how to so I googled it and to do so I found on pypi.org that all I had to do was run pip install spyder-terminal in the cmd prompt. I tried this but at the end it said that I had a permissions error and to try the --user option. I copied and pasted the exact error and saw on git hub, to create an environment or run python -m pip install --user [INSERT PACKAGE NAME].
I don't really understand hat an environment is so I did the second --user way. I ran python -m pip install --user spyder terminal I got an error about a location not being in the path variable, so i just copied the file location that it referenced and copied it the the path. I then went to open up spyder 4.1.3 and i got the error
Traceback (most recent call last):
File "C:\Users\Aaron\anaconda3\lib\site-packages\qtpy\__init__.py", line 204, in
from PySide import __version__ as PYSIDE_VERSION # analysis:ignore
ModuleNotFoundError: No module named 'PySide'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Users\Aaron\anaconda3\Scripts\spyder-script.py", line 10, in
sys.exit(main())
File "C:\Users\Aaron\anaconda3\lib\site-packages\spyder\app\start.py", line 201, in main
from spyder.app import mainwindow
File "C:\Users\Aaron\anaconda3\lib\site-packages\spyder\app\mainwindow.py", line 53, in
requirements.check_qt()
File "C:\Users\Aaron\anaconda3\lib\site-packages\spyder\requirements.py", line 41, in check_qt
import qtpy
File "C:\Users\Aaron\anaconda3\lib\site-packages\qtpy\__init__.py", line 210, in
raise PythonQtError('No Qt bindings could be found')
qtpy.PythonQtError: No Qt bindings could be found"
I tried opening it again and got the same error. I then tried uninstalling an dre-installing spyder in the anaconda navigator and got the same error. I tried removing the location I added to path and running "pip uninstall spyder-terminal", it said it was removed and I go the same error.
If possible, I am seeking specific steps in layman's terms, because all my knowledge thus far has come from the first 2 hours of a "cool things in python" type video.

ImportError while importing sklearn

I am using python 3.7
Recently I started getting this error while importing sklearn module.
I get the same error in Jupyter Notebook, Python IDLE, Pycharm virtual environment
>>> import sklearn
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "C:\Users\aditya\AppData\Roaming\Python\Python37\site-packages\sklearn\__init__.py", line 75, in <module>
from .utils._show_versions import show_versions
File "C:\Users\aditya\AppData\Roaming\Python\Python37\site-packages\sklearn\utils\_show_versions.py", line 12, in <module>
from ._openmp_helpers import _openmp_parallelism_enabled
ImportError: DLL load failed: The specified module could not be found.
I have tried reinstalling too.
After that I copied contents of sklearn of venv of another project which had no issues. This thing worked for couple of times. But now it's not working again
Note: pandas, numpy, scipy etc are installed and working absolutely fine. Sklearn was also working fine few days back
This is an issue in the packaging in scikit-learn 0.22.0 which will be solved in 0.22.1 (released next week). The issue is tracked at: github.com/scikit-learn/scikit-learn/issues/15899. There are 2 possible workarounds:
Install scikit-learn from conda-forge (conda include the missing dll) by default: conda install conda-forge::scikit-learn
Install VC++ which will have the openmp library (https://support.microsoft.com/en-us/help/2977003/the-latest-supported-visual-c-downloads)

pip failed with error code 1 while installing pyzmail

I'm trying to send Gmail through python3. I can use the email and smptlib, but I wanted to try out pyzmail.
However, when I try to install pyzmail, I get this:
$ pip3 install pyzmail
Collecting pyzmail
Using cached https://files.pythonhosted.org/packages/23/9a/c8709821fa15cec44f825fba884284b261a06d8a0033a16f4c35470eb26a/pyzmail-1.0.3.tar.gz
Collecting distribute (from pyzmail)
Using cached https://files.pythonhosted.org/packages/5f/ad/1fde06877a8d7d5c9b60eff7de2d452f639916ae1d48f0b8f97bf97e570a/distribute-0.7.3.zip
Complete output from command python setup.py egg_info:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/private/var/folders/8r/50c4fq6j70q0qmhvwxvr00fw0000gn/T/pip-install-v4ervkb7/distribute/setuptools/__init__.py", line 2, in <module>
from setuptools.extension import Extension, Library
File "/private/var/folders/8r/50c4fq6j70q0qmhvwxvr00fw0000gn/T/pip-install-v4ervkb7/distribute/setuptools/extension.py", line 5, in <module>
from setuptools.dist import _get_unpatched
File "/private/var/folders/8r/50c4fq6j70q0qmhvwxvr00fw0000gn/T/pip-install-v4ervkb7/distribute/setuptools/dist.py", line 7, in <module>
from setuptools.command.install import install
File "/private/var/folders/8r/50c4fq6j70q0qmhvwxvr00fw0000gn/T/pip-install-v4ervkb7/distribute/setuptools/command/__init__.py", line 8, in <module>
from setuptools.command import install_scripts
File "/private/var/folders/8r/50c4fq6j70q0qmhvwxvr00fw0000gn/T/pip-install-v4ervkb7/distribute/setuptools/command/install_scripts.py", line 3, in <module>
from pkg_resources import Distribution, PathMetadata, ensure_directory
File "/private/var/folders/8r/50c4fq6j70q0qmhvwxvr00fw0000gn/T/pip-install-v4ervkb7/distribute/pkg_resources.py", line 1518, in <module>
register_loader_type(importlib_bootstrap.SourceFileLoader, DefaultProvider)
AttributeError: module 'importlib._bootstrap' has no attribute 'SourceFileLoader'
----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /private/var/folders/8r/50c4fq6j70q0qmhvwxvr00fw0000gn/T/pip-install-v4ervkb7/distribute/
I tested installing a different pip module but everything seemed to be in order.
I also tried easy_install but it installed for python 2.7, and not 3.
I think it might be something about my setuptools, but I don't know what needs to be done.
The pyzmail packages seems to be inactive now as the last commit and the last release were made 4 years ago. It does not seem to be updated for Python 3.6+.
There was an issue posted on the package's github page with the same error as yours: https://github.com/aspineux/pyzmail/issues/15. Someone posted a patch as a workaround but the best solution is to use pyzmail36 instead:
Tagging #cfenollosa #GheloAce in case you're still using this library
and are looking for a more maintainable way forward.
This repository unfortunately seems inactive, so I created a new
package on PyPI that includes all the fixes to make pyzmail
pip-installable on Python 3.6.
The name of the new package is pyzmail36. You can just update your
requirements.txt file to list pyzmail36 instead of pyzmail and all of
the rest of your code shouldn't need to change.
So just try with:
pip3 install pyzmail36
There are several ways to install pyzmail such as:
Try to use " pip install pyzmail36" by installing Python 3.6 first on your device.
Try to update the setup-tools by typing "pip install setuptools==20.1.1" and then install pyzmail.
Try to search for easy_install on Python 3.x, I have found several links for that.
Good luck.

installed tesserocr(python) can't see leptonica

I have installed leptonica and tesseract in $HOME/local and tesseract is working properly, then tesserocr python package with:
CPPFLAGS="-I/home/user/local/include /home/user/local/lib" pip install tesserocr
and when I want to invoke it I get this:
$ python3 extract.py
Traceback (most recent call last):
File "extract.py", line 4, in <module>
from tesserocr import PyTessBaseAPI, RIL, PyLTRResultIterator, iterate_level
ImportError: liblept.so.5: cannot open shared object file: No such file or directory
please help
As mentioned in my comment on the original post, the proper installation command should be:
CPPFLAGS="-I/home/user/local/include -L/home/user/local/lib" pip install tesserocr

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