I am trying to plot two data series plotted in one graph (histogram) using gnuplot. One is Baseline data and other one is Optimized. The script looks like this currently.
n=50
max=0.07946462
min=0.0
reset
width=(max-min)/n #interval width
hist(x,width)=width*floor(x/width)+width/2.0 #function used to map a value
to the intervals
set term png #output terminal and file
set output "histogram.png"
set xrange [min:max]
set yrange [0:]
set style fill solid 0.5 #fillstyle
set termopt enhanced # turn on enhanced text mode
set xlabel "PowerDensity(mA/um2)"
set ylabel "Area(um2)"
set title 'Power Density Histogram'
plot 'power_density_oxili_sptp.txt' u (hist($2,width)):($1) smooth frequency
w boxes lc rgb"blue" title 'Baseline', 'power_density_oxili_sptp.txt' u
(hist($3,width)):($1) smooth frequency w boxes lc rgb"red" title 'Optimized'
The output of this will be as given
enter image description here
The problem here, I am not able to see baseline data (blue) completely,since it is hiding below the optimized data.Either I need to see both data or I need to plot histogram separately in the same graph.
Br
Sree
It looks like you want the two histograms to be transparent. For that you should set the transparent flag in your fillstyle (see help fillstyple):
set style fill transparent solid 0.5
In addition, you need to specify truecolor to get transparent areas from the standard png terminal (see help png):
set term png truecolor
Alternatively you can use the pngcairo terminal.
Related
Hello fellow stackers,
So I am a gnuplot afficcionado and I keep trying to use gnuplot to draw all sorts of things (including molecules) using it. These days I decided that it would be awesome if I could draw polyhedran in it with this beautiful thining-edge occlusion effect that we see in the interactive javascript polyhedral images here. See how the backside of the polyhedron is drawn differently from the front side and how they change dynamically as you rotate the solid? How can I do that in gnuplot?
I agree that is a really nice representation. Gnuplot cannot currently do the equivalent of "draw the inside edges using thinner lines", but the combination of partial transparency and using the background color as the fill color for the faces creates almost the same effect.
# Generation of polyhedral vertices and faces not shown.
# Each face is an object of type polygon, e.g.
# set object 1 polygon from ... to ... to ...
# make all the faces semi-transparent
set for [i=1:20] object i fillstyle transparent solid 0.6 fillcolor bgnd border lw 2
# use pm3d depthorder sorting to render the objects
# NB: gnuplot version 5.3 required
set for [i=1:20] object i polygon depthorder
set xrange [-2:2]; set yrange [-2:2]; set zrange [-2:2]
set view equal xyz
set view 30,30,1.5
unset border
unset tics
unset key
unset label
splot NaN
Results shown below for a cube and for an icosahedron. You can rotate them interactively as with any other splot.
I'm trying to use multiplot to stack two image plots on top of one another, in a column. When I try to test this with x11 terminal, the images are produced separately, only one visible at a time. When I use the epslatex terminal, which is what I want, then the text is drawn correctly within the LaTeX document, but the EPS portion of the plot is produced as two separate pages, resulting in a figure that is missing a lower half.
Here's the multiplot section of my script:
set multiplot 2,1
set cbrange [-0.4:0.4]
set cbtics -0.4,0.2,0.4
unset xlabel
set tmargin at screen 0.95
set bmargin at screen 0.60
plot data u 1:2:3 with image notitle
set cbrange [-0.1:0.1]
set cbtics -0.1,0.05,0.1
set xlabel "$x$"
set tmargin at screen 0.50
set bmargin at screen 0.15
plot data u 1:2:3 with image notitle
unset multiplot
unset output
What results in the document is this:
I have tried enlarging the vertical size of the plotting area(per this question), but what this does is increase size of each page in the EPS file. To be clear, the product of plotting with epslatex is an EPS file containing two pages, the first with the first plot at the position that I want (near the top), and the second with the second plot at the position that I want (near the bottom).
This normally happens when you are not in multiplot mode. For me, set multiplot 2,1 gives an error message "only valid in the context of an auto-layout command". The command set multiplot layout 2,1 works with Gnuplot 5.0 and 4.6.
As a side note: This behavior can be used to produce animated gifs with set terminal gif animate, each plot command creates a new frame.
I am trying to plot a function of two variables represented in tabular form. I would like to label my color bar while representing this as a heatmap. No matter how much I rescale, no luck, and I don't even see the colorbar label appearing. Here is my gnuplot script:
set title "Flux in core vs radius and height"
set view map
set cblabel "Neutron flux (cm^-2 s^-1)"
set xlabel "Radius (cm)"
set ylabel "Axial distance from center (cm)"
splot "flux.out" using 1:2:3 with image
And the result looks like this, lacking a colorbar label:
The cblabel is printed outside the picture. You can manually adjust the margins to make some space for the label:
set lmargin at screen 0.1
set rmargin at screen 0.7
I used at screen because else the picture would be cropped again. And I also set lmargin because else in my test the ylabel would not fit on the page.
Tested with Gnuplot 4.6.
I am making a video for my simulation, where each each frame is a picture of the simulation, and a graph. I'm making the graph with gnuplot, and I first run the simulation to determine the x and y ranges to use and then hardcode the range into the plot script. It works okay, but the plot does not use up the entire surface, there is a ton of white space, and the plot is only about 1/4 of the total area. Is there a way to make the plot expand closer to the edges of the boundary, or a way to control the plot placement?
Script:
set term postscript eps color enhanced "Helvetica" 36
set output 'image.eps'
set size ratio 0.8
set logscale x
set xlabel 'Time(Arb. Units)'
set xrange [10:100000]
set yrange [0:1.6]
set y2range [0:0.5]
set ylabel 'Absorption(%)'
set y2label 'Emission'
set format x '%.0e'
set xtics 10, 100, 100000
set key noautotitles
plot 'absorption.dat' axes x1y1 w lines lt 3 lw 5, 'emission.dat' axes x1y2 w lines lt 1 lw 5
Here is what comes out:
I set a grey background so you can see what space is being wasted.
Edit: I've also tried the png terminal, but that seems to make the problem even worse. The plot is shrunk even further. I replaced the top two lines of the script with:
set term png font Helvetica 36
set output 'image.png'
Then this is what comes out:
There are several things involved in the computation of the plot size:
Different terminals have different default canvas sizes. If the defaults don't fit your needs, change the size set terminal ... size ...
The canvas has a fixed aspect ratio (given by the terminals size settings) and you impose an additional constraint with set size ratio... which affects only the plot but not the canvas size. So, if you need this size ratio you must adapt the plot canvas to it.
A third parameter are the margins. Since gnuplot don't exactly know how the labels will be rendered by the terminal, the margins cannot be exact. You can set margins manually with set bmargin ... (for the bottom margin) and equivalently for the other margins.
I would suggest to use a terminal that accept the crop flag
e.g. png, gif, jpeg but also epscairo
I'm trying to model a certain progress through some environment. The x axis would represent the location (based on x coordinate) in the environment.
In order to make this clear, I'd like an image of the environment (based on a .png) on the x axis (the environment is rather wide and not that high, so it should look good) of my plot, basically as an xtics/x-axis label.
Do you have any suggestions on how to approach this?
Thanks in advance!
You can either plot both the image and the data in one plot command, or with multiplot. The first variant is easier, but the image is inside the plot, the other is a bit more complicated, but allows arbitrary positioning of the "axis image".
The dummy image "gradient.png" for the axis is
One plot command:
set yrange[0:1]
set xrange[0:1]
plot 'gradient.png' binary filetype=png dx=0.0015 dy=0.002 with rgbimage t '',\
x**2
The result is:
Using multiplot
set yrange[0:1]
set xrange[0:1]
set lmargin at screen 0.1
set rmargin at screen 0.98
set tmargin at screen 0.98
set bmargin at screen 0.2
set xtics offset 0,-1.5
set xlabel 'xlabel' offset 0,-1.5
set ylabel 'ylabel'
set multiplot
plot x**2
set tmargin at screen 0.2
set bmargin at screen 0.15
unset border
unset tics
unset xlabel
unset ylabel
unset key
set autoscale xy
plot 'gradient.png' binary filetype=png with rgbimage
unset multiplot
As you can see, this requires a bit more effort. To explain the details:
You must set explicit margins so that the axis image can be placed exactly below the main plot.
Before plotting the axis image, you must remove tics, labels, reset ranges to autoscale etc. (Therefore you must also set fixed lmargin and rmargin).
To plot the image itself, use the plotting style with rgbimage.
You must fine-tune the xtics and xlabel offset, as well as the marings.
The resulting image is: