Cannot execute binary file when calling its whole path [duplicate] - linux

This question already has answers here:
"cannot execute binary file" when trying to run a shell script on linux
(6 answers)
Closed 4 years ago.
I am trying to use the bison utility in Linux Ubuntu 16. The binary file is located at /usr/bin/bison set by the sudo apt-get bison command.
However, when I call bison from bash it looks like it works, but if I call the bison using its path, I get the following error (can be seen in screenshot)
Cannot execute binary file
Note that the path of the binary is gotten with *type -a bison*
Also, alongside the bison binary in /usr/bin, there is another file called bison.yacc which contains:
#! /bin/sh
exec '/usr/bin/bison' -y "$#"
Is there any reason to that problem? Any solution?

You cannot use . (or its effective alias, source) with binaries.
. / source is intended for executing shell code in the context of the current shell.
Binaries can only run in a child process, so you invoke them directly:
/usr/bin/bison
exec also creates a new process, but it replaces the current shell.

Related

How to run bash file with one word [duplicate]

This question already has answers here:
How do I run a shell script without using "sh" or "bash" commands?
(13 answers)
Closed 1 year ago.
Issue
I want to run a bash file more easily, I've seen some applications where you only need to type word to execute the script.
Instead of typing ~/folder/file.sh in the terminal,
I only have to type a_word to run the file.
Is this possible with bash?
And also, this is on RPiOS's terminal, not sure if it differs.
Save your file to a location named in PATH. /usr/local/bin/a_word (no .sh) is a great example of such a location. Make sure it has executable permissions and starts with a shebang (like #!/usr/bin/env bash).
When you want to install something just for your own account, it's common practice to create a ~/bin directory and add it to your PATH (as by adding something like PATH=$PATH:$HOME/bin in ~/.bash_profile).
You have to define a so called alias.
Edit the file $HOME/.bashrc and add alias a_word = '$HOME/folder/file.sh', then logout and logon again.

Why does a bash script require an execute bit if a windows batch script can just be executed?

Yesterday I ran into the git execute bit bash script quirk - the one that requires:
git update-index --add --chmod=+x scriptname.sh
and it seemed strange to me that it was even possible to get stuck in this situation. (Ie having created a script file that you don't have permission to run).
If I have created a shell script - surely I can run it under the permissions of the shell execute permissions. Why would it need it's own execute permission bit?
My question is: Why does a bash script require an execute bit if a windows batch script can just be executed?
To run a script you have two options in unix like systems. First Option is to use a direct interpreter call with the script as parameter.
# run a bash script
bash test.sh
# run a python scripts
python test.py
The second option is mark your file as executable, with the execute bit and after a call like this ...
# sample bash
./test.sh
# sample python
./test.py
... your system tries to find the right interpreter for you. For this the first line 'shebang' of the script is used.
Bash example:
#!/bin/bash
# points to the installed bash interpreter - bash example
Python example:
#!/usr/bin/python
# points to the installed python interpreter
To your question windows only use the file extension to detect a executable file.
Well, Linux is not Windows. Linux/Unix file systems support the executable bit to distinguish executable from pure data files, and to control exec permissions for user|group|others. You can still run the script if you prefix it with the name of the shell/binary you want to start it with, but if you want to do ./scriptname.sh or execute it from the path it needs to be flagged as executable for you as the onwer|a group member|some other user, and for scripts usually the shebang in the first line that defines the interpreter to start the script with: #!/bin/bash.

What exactly does "/usr/bin/env node" do at the beginning of node files?

I had seen this line #!/usr/bin/env node at the beginning of some examples in nodejs and I had googled without finding any topic that could answer the reason for that line.
The nature of the words makes search it not that easy.
I'd read some javascript and nodejs books recently and I didn't remember seeing it in any of them.
If you want an example, you could see the RabbitMQ official tutorial, they have it in almost all of their examples, here is one of them:
#!/usr/bin/env node
var amqp = require('amqplib/callback_api');
amqp.connect('amqp://localhost', function(err, conn) {
conn.createChannel(function(err, ch) {
var ex = 'logs';
var msg = process.argv.slice(2).join(' ') || 'Hello World!';
ch.assertExchange(ex, 'fanout', {durable: false});
ch.publish(ex, '', new Buffer(msg));
console.log(" [x] Sent %s", msg);
});
setTimeout(function() { conn.close(); process.exit(0) }, 500);
});
Could someone explain me what is the meaning of this line?
What is the difference if I put or remove this line? In what cases do I need it?
#!/usr/bin/env node is an instance of a shebang line: the very first line in an executable plain-text file on Unix-like platforms that tells the system what interpreter to pass that file to for execution, via the command line following the magic #! prefix (called shebang).
Note: Windows does not support shebang lines, so they're effectively ignored there; on Windows it is solely a given file's filename extension that determines what executable will interpret it. However, you still need them in the context of npm.[1]
The following, general discussion of shebang lines is limited to Unix-like platforms:
In the following discussion I'll assume that the file containing source code for execution by Node.js is simply named file.
You NEED this line, if you want to invoke a Node.js source file directly, as an executable in its own right - this assumes that the file has been marked as executable with a command such as chmod +x ./file, which then allows you to invoke the file with, for instance, ./file, or, if it's located in one of the directories listed in the $PATH variable, simply as file.
Specifically, you need a shebang line to create CLIs based on Node.js source files as part of an npm package, with the CLI(s) to be installed by npm based on the value of the "bin" key in a package's package.json file; also see this answer for how that works with globally installed packages. Footnote [1] shows how this is handled on Windows.
You do NOT need this line to invoke a file explicitly via the node interpreter, e.g., node ./file
Optional background information:
#!/usr/bin/env <executableName> is a way of portably specifying an interpreter: in a nutshell, it says: execute <executableName> wherever you (first) find it among the directories listed in the $PATH variable (and implicitly pass it the path to the file at hand).
This accounts for the fact that a given interpreter may be installed in different locations across platforms, which is definitely the case with node, the Node.js binary.
By contrast, the location of the env utility itself can be relied upon to be in the same location across platforms, namely /usr/bin/env - and specifying the full path to an executable is required in a shebang line.
Note that POSIX utility env is being repurposed here to locate by filename and execute an executable in the $PATH.
The true purpose of env is to manage the environment for a command - see env's POSIX spec and Keith Thompson's helpful answer.
It's also worth noting that Node.js is making a syntax exception for shebang lines, given that they're not valid JavaScript code (# is not a comment character in JavaScript, unlike in POSIX-like shells and other interpreters).
[1] In the interest of cross-platform consistency, npm creates wrapper *.cmd files (batch files) on Windows when installing executables specified in a package's package.json file (via the "bin" property). Essentially, these wrapper batch files mimic Unix shebang functionality: they invoke the target file explicitly with the executable specified in the shebang line - thus, your scripts must include a shebang line even if you only ever intend to run them on Windows - see this answer of mine for details.
Since *.cmd files can be invoked without the .cmd extension, this makes for a seamless cross-platform experience: on both Windows and Unix you can effectively invoke an npm-installed CLI by its original, extension-less name.
Scripts that are to be executed by an interpreter normally have a shebang line at the top to tell the OS how to execute them.
If you have a script named foo whose first line is #!/bin/sh, the system will read that first line and execute the equivalent of /bin/sh foo. Because of this, most interpreters are set up to accept the name of a script file as a command-line argument.
The interpreter name following the #! has to be a full path; the OS won't search your $PATH to find the interpreter.
If you have a script to be executed by node, the obvious way to write the first line is:
#!/usr/bin/node
but that doesn't work if the node command isn't installed in /usr/bin.
A common workaround is to use the env command (which wasn't really intended for this purpose):
#!/usr/bin/env node
If your script is called foo, the OS will do the equivalent of
/usr/bin/env node foo
The env command executes another command whose name is given on its command line, passing any following arguments to that command. The reason it's used here is that env will search $PATH for the command. So if node is installed in /usr/local/bin/node, and you have /usr/local/bin in your $PATH, the env command will invoke /usr/local/bin/node foo.
The main purpose of the env command is to execute another command with a modified environment, adding or removing specified environment variables before running the command. But with no additional arguments, it just executes the command with an unchanged environment, which is all you need in this case.
There are some drawbacks to this approach. Most modern Unix-like systems have /usr/bin/env, but I worked on older systems where the env command was installed in a different directory. There might be limitations on additional arguments you can pass using this mechanism. If the user doesn't have the directory containing the node command in $PATH, or has some different command called node, then it could invoke the wrong command or not work at all.
Other approaches are:
Use a #! line that specifies the full path to the node command itself, updating the script as needed for different systems; or
Invoke the node command with your script as an argument.
See also this question (and my answer) for more discussion of the #!/usr/bin/env trick.
Incidentally, on my system (Linux Mint 17.2), it's installed as /usr/bin/nodejs. According to my notes, it changed from /usr/bin/node to /usr/bin/nodejs between Ubuntu 12.04 and 12.10. The #!/usr/bin/env trick won't help with that (unless you set up a symlink or something similar).
UPDATE: A comment by mtraceur says (reformatted):
A workaround for the nodejs vs node problem is to start the file with
the following six lines:
#!/bin/sh -
':' /*-
test1=$(nodejs --version 2>&1) && exec nodejs "$0" "$#"
test2=$(node --version 2>&1) && exec node "$0" "$#"
exec printf '%s\n' "$test1" "$test2" 1>&2
*/
This will first try nodejs and then try node, and only
print the error messages if both of them are not found. An explanation
is out of scope of these comments, I'm just leaving it here in case it
helps anyone deal with the problem since this answer brought the
problem up.
I haven't used NodeJS lately. My hope is that the nodejs vs. node issue has been resolved in the years since I first posted this answer. On Ubuntu 18.04, the nodejs package installs /usr/bin/nodejs as a symlink to /usr/bin/node. On some earlier OS (Ubuntu or Linux Mint, I'm not sure which), there was a nodejs-legacy package that provided node as a symlink to nodejs. No guarantee that I have all the details right.
The exec system call of the Linux kernel understands shebangs (#!) natively
When you do on bash:
./something
on Linux, this calls the exec system call with the path ./something.
This line of the kernel gets called on the file passed to exec: https://github.com/torvalds/linux/blob/v4.8/fs/binfmt_script.c#L25
if ((bprm->buf[0] != '#') || (bprm->buf[1] != '!'))
It reads the very first bytes of the file, and compares them to #!.
If the comparison is true, then the rest of the line is parsed by the Linux kernel, which makes another exec call with:
executable: /usr/bin/env
first argument: node
second argument: script path
therefore equivalent to:
/usr/bin/env node /path/to/script.js
env is an executable that searches PATH to e.g. find /usr/bin/node, and then finally calls:
/usr/bin/node /path/to/script.js
The Node.js interpreter does see the #! line in the file, but it must be programmed to ignore that line even though # is not in general a valid comment character in Node (unlike many other languages such as Python where it is), see also: Pound Sign (#) As Comment Start In JavaScript?
And yes, you can make an infinite loop with:
printf '#!/a\n' | sudo tee /a
sudo chmod +x /a
/a
Bash recognizes the error:
-bash: /a: /a: bad interpreter: Too many levels of symbolic links
#! just happens to be human readable, but that is not required.
If the file started with different bytes, then the exec system call would use a different handler. The other most important built-in handler is for ELF executable files: https://github.com/torvalds/linux/blob/v4.8/fs/binfmt_elf.c#L1305 which checks for bytes 7f 45 4c 46 (which also happens to be human readable for .ELF). Let's confirm that by reading the 4 first bytes of /bin/ls, which is an ELF executable:
head -c 4 "$(which ls)" | hd
output:
00000000 7f 45 4c 46 |.ELF|
00000004
So when the kernel sees those bytes, it takes the ELF file, puts it into memory correctly, and starts a new process with it. See also: How does kernel get an executable binary file running under linux?
Finally, you can add your own shebang handlers with the binfmt_misc mechanism. For example, you can add a custom handler for .jar files. This mechanism even supports handlers by file extension. Another application is to transparently run executables of a different architecture with QEMU.
I don't think POSIX specifies shebangs however: https://unix.stackexchange.com/a/346214/32558 , although it does mention in on rationale sections, and in the form "if executable scripts are supported by the system something may happen". macOS and FreeBSD also seem to implement it however.
PATH search motivation
Likely, one big motivation for the existence of shebangs is the fact that in Linux, we often want to run commands from PATH just as:
basename-of-command
instead of:
/full/path/to/basename-of-command
But then, without the shebang mechanism, how would Linux know how to launch each type of file?
Hardcoding the extension in commands:
basename-of-command.js
or implementing PATH search on every interpreter:
node basename-of-command
would be a possibility, but this has the major problem that everything breaks if we ever decide to refactor the command into another language.
Shebangs solve this problem beautifully.
Short answer:
It is the path to the interpreter.
EDIT (Long Answer):
The reason there is no slash before "node" is because you can not always guarantee the reliability of #!/bin/ . The "/env" bit makes the program more cross-platform by running the script in a modified environment and more reliably being able to find the interpreter program.
You do not necessarily need it, but it is good to use to ensure portability (and professionalism)

Cannot run a shell script created on Windows [duplicate]

This question already has an answer here:
Why is a shell script giving syntax errors when the same code works elsewhere? [duplicate]
(1 answer)
Closed 7 years ago.
I seem to be having a weird problem, the solution for which might be dead simple and I am just being blind.
My development environment is Windows. I create a deployment archive file, within which contains a shell script file (called install.sh). I sftp this archive over to a linux environment, untar it and try to run execute the script (after chmod to make it executable) and I get this error:
syntax error: unexpected end of file
I don't notice any errors in the file. I delete this file, create a new install.sh, copy over the exact contents from my Windows env, chmod it again, run it again and this time it runs fine!
I have no idea why it does not run the first time I untar it. Any help appreciated!
Check your file:
cat --show-nonprinting file
Remove carriage returns from Windows/DOS:
tr -d "\r" < file > fixed_file
Linux and Windows uses different end of line (CL or CLRF), or maybe it's an encoding problem. You should check the differences between the running sh and the non-running one.

executing windows command line operation from python [duplicate]

This question already has answers here:
Closed 10 years ago.
Possible Duplicate:
How to call external command in Python
I want to execute a windows command line operation using python. To execute the command I have to go to a particular directory within my system and then execute the command.
for example
1) Go to a particular directory c:\some\directory
2) then use command somecommand -x -y
I saw some posts on this topic but I was not able to figure them out properly.
Thanks
I assume you want to change the working directory then execute a command. So:
os.chdir(DIRECTORY);
os.system(COMMAND);
os.chdir - Set the current working directory.
os.system - Execute a "system" command.
If setting the working directory is not required you could just specify the full path to os.system.
Also, you might want to check out subprocess as it might be more what you're looking for.

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