ImportError:'save_weights' requires h5py - keras

When I save weights during training my CNN model using keras, it says ImportError:'save_weights' requires h5py, but I have already installed h5py.
I would greatly appreciate if someone could explain how to fix this issue.

Just install necessary packages
sudo apt-get install libhdf5-dev
pip install h5py

If you are using windows and python IDE, open cmd and input following commands:
pip install h5py
pip install cython
I hope it helps.

I was getting the same error as you.
I installed all the requirements listed here: https://github.com/fchollet/keras/issues/3426
Finally just needed to reboot and it started working.

As suggested by others:
pip install h5py
Note that this may not immediately resolve the issue in your active session and you may need to reload keras.models either through the following commands or by just creating a new session/re-opening your jupyter notebook.
In Python3:
from importlib import reload
reload(keras.models)
In Python2:
use importlib.import_module instead. See docs for a reference.
These additional steps may be necessary because of the try/except ImportError in keras sourcecode that assigns h5py = None when it's unable to locate it the first time it's executed.

In my case, re-installing did the trick:
pip uninstall -y cython h5py
pip install cython h5py
(Windows 10, Conda, Keras 2.4.3)

I think you may miss this
from keras.applications import imagenet_utils

I got the same problem even though I have imported the h5py.
It is the load error with the keras. It has to be reloaded.
import keras
from importlib import reload
reload(keras.models)
It has worked for me.

h5py==2.10.0 works well with TF >= 2.1 so try 'pip install h5py==2.10.0'

Have you tried directly installing h5py? http://docs.h5py.org/en/latest/build.html
Try running:
pip install h5py
or
sudo apt-get install libhdf5

Related

ModuleNotFoundError: No module named sklearn

Please help me for making a good solutions of my problems. I don't work for these issue.
Below the code:
from sklearn import datasets
Below the error:
ModuleNotFoundError: No module named 'sklearn'
You may also try to install: scikit-learn
pip install scikit-learn
or via Conda:
conda install scikit-learn
you basically not installed sklearn library.. so first install sklearn with below command.
pip install sklearn
and then run the code it will resolve your issue.
If PIP is already installed on you PC, its just a matter of running a single command pip install sklearn and it will install the sklearn module easily. You can refer to https://scikit-learn.org/stable/install.html.
else you will need to install pip. Refer https://phoenixnap.com/kb/install-pip-windows for PIP installation.

Can't import ToTensorV2 in Colab

from albumentations.pytorch.transforms import ToTensorV2
I used the above code, and it doesn't work.
Just add a code block with the line
! pip install albumentations==0.4.6
above the block where you do the import. I tried installing it without the specific version and it failed.
When i did not specify the version number in pip install, version 0.1.12 was installed which does not contain ToTensorV2.
Ensure that you have the latest version
!pip install --upgrade --force-reinstall --no-deps albumentations
Get albumentations from Github.
Usage on Colab Example
!pip install -U git+https://github.com/albu/albumentations > /dev/null

<Import statement issue>ImportError: Missing required dependencies ['numpy'] [duplicate]

Since yesterday I've had this error when I try to import packages on anaconda :
ImportError: Missing required dependencies ['numpy']
I have tried un-installing Anaconda and Python, switching to Python 2.7 but nothing works it's still the same error, here is the code I get :
Any help is really appreciated thanks !
I had this same issue immediately after upgrading pandas to 0.19.2. I fixed it with the following install/uninstall sequence from the windows cmd line:
pip uninstall pandas -y
pip uninstall numpy -y
pip install pandas
pip install numpy
This also broke my matplotlib install so I uninstalled/installed that as well.
Very odd behavior for a seemingly routine upgrade.
What happens if you try to import numpy?
Have you tried'
pip install --upgrade numpy
pip install --upgrade pandas
I had to install this other package:
sudo apt-get install libatlas-base-dev
Seems like it is a dependency for numpy but the pip or apt-get don't install it automatically for whatever reason.
I had this problem with last version of numpy 1.16.x
Problem resolved with
python3 -m pip uninstall numpy
python3 -m pip install numpy==1.14.0
Did you install miniconda and pandas without dependencies?
Try installing numpy first with conda install numpy or pip install numpy.
If you're on Windows you can get pre-compiled versions of most libraries that require compilation from here.
On Windows 10 Anaconda3-5.3.0-Windows-x86_64 I had the Missing required dependencies ['numpy'] error when running scripts as so, %HOMEPATH%\AppData\Local\Continuum\anaconda3\python.exe pandas_script_foo.py.
In my case the error was caused by missing Anaconda package PATH definitions when running Anaconda python.exe in a windows cmd.exe session. The numpy package is not missing. It just can't be found on the PATH.
The Anaconda installation includes windows shortcuts that give examples of configuring the PATH per script run. See the shortcuts in the %HOMEPATH%\AppData\Roaming\Microsoft\Windows\Start Menu\Programs\Anaconda3 (64-bit) directory for examples.
See the %HOMEPATH%\AppData\Local\Continuum\anaconda3\cwp.py script to see how Anaconda configures PATH.
Below is an example windows BAT file that calls cwp.py to setup PATH, and then run a python script. Its a copy of the commands the Anaconda jupyter-lab shortcut executes.
%HOMEPATH%\AppData\Local\Continuum\anaconda3\python.exe ^
%HOMEPATH%\AppData\Local\Continuum\anaconda3\cwp.py ^
%HOMEPATH%\AppData\Local\Continuum\anaconda3 ^
%HOMEPATH%\AppData\Local\Continuum\anaconda3\python.exe ^
%HOMEPATH%\AppData\Local\Continuum\anaconda3\Scripts\jupyter-lab-script.py
If you need to execute python scripts on Anaconda with the conveniance of running a BAT file, the above BAT file example should do the trick.
The data manipulation capabilities of pandas are built on top of the numpy library. In a way, numpy is a dependency of the pandas library. If you want to use pandas, you have to make sure you also have numpy. When you install pandas using pip, it automatically installs numpy. If it doesn't, try the following
pip install -U numpy pandas
For conda
conda install numpy pandas
I also faced the same issue. It happened to me after I upgraded my numpy library.
It was resolved in my case by upgrading my pandas library as well after upgrading my numpy library using the below command:
pip install --upgrade pandas
Try:
sudo apt-get install libatlas-base-dev
It should work now.
Else, try uninstall and reinstall numpy and pandas.
I had the same issue. It was because I had multiple versions of numpy installed. Remove all versions by repeatedly using:
pip uninstall numpy
Then re-install it with the command:
pip install numpy
First, try to import numpy on it's own, like so:
import numpy as np
I got this message:
ImportError: Something is wrong with the numpy installation. While importing
we detected an older version of numpy in
['/home/michael/.local/lib/python3.6/site-packages/numpy']. One method of
fixing this is to repeatedly uninstall numpy until none is found, then
reinstall this version.
So do what it says, keep uninstalling numpy until there is none, and then reinstall.
This worked for me.
I had the same issue while using Microsoft Visual Code with Python 3.7.3 64-bit('base':conda)as my python interpreter. Before running any code type the following three commands:
C:/ProgramData/Anaconda3/Scripts/activate #activate conda Scripts directory
conda activate base #activate conda
& C:/ProgramData/Anaconda3/python.exe #to run python
I have same problem.
I have got two version of numpy 1.16.6 and 1.15.4, fresh installed pandas did not work correctly.
I fixed it by uninstalling all versions of numpy and pandas and install the last versions.
$ pip uninstall numpy pandas -y
Uninstalling numpy-1.16.6:
Successfully uninstalled numpy-1.16.6
Uninstalling pandas-0.24.2:
Successfully uninstalled pandas-0.24.2
$ pip uninstall numpy pandas -y
Uninstalling numpy-1.15.4:
Successfully uninstalled numpy-1.15.4
Cannot uninstall requirement pandas, not installed
$ pip uninstall numpy pandas -y
Cannot uninstall requirement numpy, not installed
$ pip install numpy pandas
I had the same issue with anaconda package, it got updated.
anaconda {4.3.1 -> custom} ## I am not sure if this was the issue
Hit below command to know
conda list --revisions
what i did is just uninstall pandas with conda and re-install it
conda install pandas
Some new libs may also get installed with it.
It worked for me hope will do the same for you.
Uninstall all pip packages that you're having problems with. Manually remove all site-packages files. If you're using MacPorts, sudo port clean .
Then try reinstalling. Sometimes, there are files that should have been removed, but weren't if the installation was abruptly interrupted or something.
There could be an issue with conflicting versions of the package(s), as well as potentially issues with Pathing. Are you sure you've set the correct Path for your binaries? (/opt/local/bin, /anaconda2/bin, etc.)
Another issue could be some PYTHONPATH that's explicitly looking in the wrong place for the file.
I had a same issue recently with Anaconda with Python 3.7.
I solved this problem by downgrading python version to 3.6:
conda install python=3.6
and then by updating all the packages:
conda update --all
pandas is built on top of numpy so you need to have numpy to use the data manipulation feature, so install numpy first.
pip install numpy
This worked in my anaconda environment, but I do not know why conda does not work. For some reason conda uninstall was not sufficient. This only worked with conda remove.
conda remove pandas
conda remove numpy
conda install pip
pip install pandas
*With help from this answer
This raises the following import warning in python 3.6 and 3.7:
ImportWarning: can't resolve package from __spec__ or __package__, falling back on __name__ and __path__
If you with to ignore this warning (and maybe other ImportWarnings), add the following to your script before importing pandas:
import warnings
warnings.filterwarnings('ignore', category=ImportWarning, module='_bootstrap.py')
In my case even though I was using the above options of uninstall and installing using pip the code was still giving me same errors.
Finally, I created a vritual environment and Installed numpy and pandas using pip in my virtual env. Now the code is running.
Steps: for Anaconda3 - Please change according to your installation type:
[if you dont have virtual env package installed]
$ pip install virtualenv
[from command prompt go to the directory by c:\anadonda3\scripts
[write the following command to use virtual env to create a virtual env for you in your desired location]
$virtualenv c:\anaconda3\envs\my_virtual_env
[once created you will have to activate your virtual env]
$c:\anaconda3\envs\my_virtual_env\scripts activate
[now pip install numpy and pandas and other required packages using pip]
[once installations are done exit from the virtual env]
$c:\anaconda3\envs\my_virtual_env\scripts deactivate
now use the python.exe inside your virtual env folder to run the script and it will run even with python 3.7.
I am using Win10 and Conda, and this issue just append to me when upgrading python 3.7.2-h8c8aaf0_0 --> 3.7.2-h8c8aaf0_2.
I solved it by return to the previous version with
conda install python=3.7.2=h8c8aaf0_0
If you're running your program on PyCharm on Windows, there is a known bug, because PyCharm simply doesn't add env-related paths to PATH.
The issue is fixed in the 2019.1 Early Access Preview (EAP) build.
For me installing the EAP fixed the issue.
nothing worked for me ... except when I found this
I suspect that you have a local file called unittest.py that is getting imported instead of the standard module.
I was trying to upgrade my anaconda 2 with anaconda 3. I tried installing Anaconda3-2018.12-Windows-x86 and Anaconda3-2019.03-Windows-x86_64 on my Windows 10 machine and failed with this error. For me, using Anaconda3-4.4.0-Windows-x86_64 for anaconda 3 worked the trick after trying everything listed in answers here.
I fixed this using Anaconda by going to Environments > base(root), searching for numpy in the installed modules and clicking the tickbox alongside it and choosing > Mark for specific version installation > 1.14.0 (as suggested by another user on this thread). Then clicking Apply. Once it downgraded numpy I stopped getting errors when running py files on the command line.
Throughout this saga, I was still able to use https://pypi.org/project/auto-py-to-exe/ even when I was getting the numpy errors on the command line, but it was a hassle to create an exe every time I wanted to test a change. It's all sorted now. I guess there was a problem with numpy 1.16.4.
Anyway, I hope this helps someone who's using Anaconda as well.
The following worked for me.
Deleted the folders for numpy and pandas together with their contents completely from the site-packages folder. Check depending on whether you are using python2 or python3. Check the exact path as per your machine.
N.B handle with care "rm -rf" command. If you are not sure of what you are doing, please do it manually using any file explorer of your choice!!
rm -rf ~/anaconda2/envs/myenv/lib/pythonX/site-packages/pandas*
rm -rf ~/anaconda2/envs/myenv/lib/pythonX/site-packages/numpy*
Then i installed clean packages for pandas and numpy as usual with
pip install numpy
pip install pandas
I've got the same error recently. Before applying uninstall or install tools, try to update your Jupyter.
How? Go to 'Environments' and type on the Search Packages box 'pandas'. Afterwards, check the version (if that column shows a blue number with a diagonal arrow, it means that your pandas is out of date). Click on 'pandas' and a option will pop up (choose 'Apply' and wait for a couple of minutes to update the package). And then, make a quick test on any notebook to make sure that your Jupyter is running smoothly.
For those who couldn't solve with the above answers:
Ensure that you are running python3 with
$ python version
If not, install python3.
Then change default python to python3 with
$ alias python=python3
Next, close your jupyter lab/notebook environment and re-launch it with default python being python3.
build_exe_options = {"packages": ["os",'pandas','numpy']}
It works.
you are running python 3.7
create environment for python 3.6
python3.6 filename.py

NLTK - AttributeError: module 'nltk' has no attribute 'data'

I used nltk in my code for a few days, but now, when I try to import nltk, I get the error:
File "C:\Users\Nada\Anaconda\lib\site-packages\nltk\corpus\reader\plaintext.py", line 42, in PlaintextCorpusReader
sent_tokenizer=nltk.data.LazyLoader(
AttributeError: module 'nltk' has no attribute 'data'
I installed weka package yesterday but it didn't work, I don't know in this has anything to do with that...
I tried to update it, but the error keeps showing up.
I was getting the same issue. I uninstalled and re-installed it completely. it worked for me.
pip uninstall nltk
Then I installed it again
pip install -U nltk
Ref: http://www.nltk.org/install.html
Shutting down the kernel and restarting fixed my issue.
I performed the same steps as above and it worked :
Uninstall - pip uninstall nltk
Install - pip install -U nltk
Close Spyder
Re-open Spyder.
To check if nltk is working - in Ipython Console type:**import nltk**
Just to add more information. I'm facing this issue when I have two notebooks and one of them is actively using NLTK. When I try to import NLTK on the other notebook, I get that error. So my answer is to look at other processes and make sure that nothing is using NLTK in the background.
i get the same issue, restarting the kernel fixed my issue
For Kaggle kernel restarting it fixed the issue.
I performed the same steps as above and it worked :
Uninstall - pip uninstall nltk
Install - pip install -U nltk
Close Spyder
Re-open Spyder.
Try putting the name of the model as a parameter of the download() function. e.g.
import nltk
nltk.download('punkt')

Build numpy with ucs4 issue

I've installed successfully python2.7 with ucs4 format.
If I install the numpy with: sudo pip install --upgrade numpy, it works and I can use it, but installing by this way only put numpy in my dist-packages, however it's needed to be in site-packages. (because Jepp can find them only there)
Thus I downloaded the numpy tar file, I buildt it (sudo python setup.py build) and installed it (sudo python setup.py install), but it gives me undefined symbol: PyUnicodeUCS2_FromUnicode. It seems for me, it installed numpy with ucs2.
How could I force to install numpy with ucs4?
(I've read this article: Numpy needs the ucs2 but EPD is not the solution for me)
Any idea may help me!
Thanks in advance.
I simply copied the installed files from dist-packages to site packages. If someone has a better solution, please inform me.

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