Need to delete first N lines of grep result files - linux

I'm trying to get rid of a hacker issue on some of my wordpress installs.
This guy puts 9 lines of code in the head of multiple files on my server... I'm trying to use grep and sed to solve this.
Im trying:
grep -r -l "//360cdn.win/c.css" | xargs -0 sed -e '1,9d' < {}
But nothing is happening, if I remove -0 fromxargs, the result of the files found are clean, but they are not overwriting the origin file with thesed` result, can anyone help me with that?
Many thanks!

You should use --null option in grep command to output a NUL byte or \0 after each filename in the grep output. Also use -i.bak in sed for inline editing of each file:
grep -lR --null '//360cdn.win/c\.css' . | xargs -0 sed -i.bak '1,9d'

What's wrong with iterating over the files directly¹?
And you might want to add the -i flat to sed so that files are edited in-place
grep -r -l "//360cdn.win/c.css" | while read f
do
sed -e '1,9d' -i "${f}"
done
¹ well, you might get problems if your files contain newlines and the like.
but then...if your website contains files with newlines, you probably have other problems anyhow...

Related

Move a file list based upon grep pattern in command line [duplicate]

I want to pass each output from a command as multiple argument to a second command, e.g.:
grep "pattern" input
returns:
file1
file2
file3
and I want to copy these outputs, e.g:
cp file1 file1.bac
cp file2 file2.bac
cp file3 file3.bac
How can I do that in one go? Something like:
grep "pattern" input | cp $1 $1.bac
You can use xargs:
grep 'pattern' input | xargs -I% cp "%" "%.bac"
You can use $() to interpolate the output of a command. So, you could use kill -9 $(grep -hP '^\d+$' $(ls -lad /dir/*/pid | grep -P '/dir/\d+/pid' | awk '{ print $9 }')) if you wanted to.
In addition to Chris Jester-Young good answer, I would say that xargs is also a good solution for these situations:
grep ... `ls -lad ... | awk '{ print $9 }'` | xargs kill -9
will make it. All together:
grep -hP '^\d+$' `ls -lad /dir/*/pid | grep -P '/dir/\d+/pid' | awk '{ print $9 }'` | xargs kill -9
For completeness, I'll also mention command substitution and explain why this is not recommended:
cp $(grep -l "pattern" input) directory/
(The backtick syntax cp `grep -l "pattern" input` directory/ is roughly equivalent, but it is obsolete and unwieldy; don't use that.)
This will fail if the output from grep produces a file name which contains whitespace or a shell metacharacter.
Of course, it's fine to use this if you know exactly which file names the grep can produce, and have verified that none of them are problematic. But for a production script, don't use this.
Anyway, for the OP's scenario, where you need to refer to each match individually and add an extension to it, the xargs or while read alternatives are superior anyway.
In the worst case (meaning problematic or unspecified file names), pass the matches to a subshell via xargs:
grep -l "pattern" input |
xargs -r sh -c 'for f; do cp "$f" "$f.bac"; done' _
... where obviously the script inside the for loop could be arbitrarily complex.
In the ideal case, the command you want to run is simple (or versatile) enough that you can simply pass it an arbitrarily long list of file names. For example, GNU cp has a -t option to facilitate this use of xargs (the -t option allows you to put the destination directory first on the command line, so you can put as many files as you like at the end of the command):
grep -l "pattern" input | xargs cp -t destdir
which will expand into
cp -t destdir file1 file2 file3 file4 ...
for as many matches as xargs can fit onto the command line of cp, repeated as many times as it takes to pass all the files to cp. (Unfortunately, this doesn't match the OP's scenario; if you need to rename every file while copying, you need to pass in just two arguments per cp invocation: the source file name and the destination file name to copy it to.)
So in other words, if you use the command substitution syntax and grep produces a really long list of matches, you risk bumping into ARG_MAX and "Argument list too long" errors; but xargs will specifically avoid this by instead copying only as many arguments as it can safely pass to cp at a time, and running cp multiple times if necessary instead.
The above will still work incorrectly if you have file names which contain newlines. Perhaps see also https://mywiki.wooledge.org/BashFAQ/020
#!/bin/bash
for f in files; do
if grep -q PATTERN "$f"; then
echo cp -v "$f" "${f}.bac"
fi
done
files can be *.txt or *.text which basically means files ending in *.txt or *text or replace with something that you want/need, of course replace PATTERN with yours. Remove echo if you're satisfied with the output. For a recursive solution take a look at the bash shell option globstar

How to apply my sed command to some lines of all my files?

I've 95 files that looks like :
2019-10-29-18-00/dev/xx;512.00;0.4;/var/x/xx/xxx
2019-10-29-18-00/dev/xx;512.00;0.68;/xx
2019-10-29-18-00/dev/xx;512.00;1.84;/xx/xx/xx
2019-10-29-18-00/dev/xx;512.00;80.08;/opt/xx/x
2019-10-29-18-00/dev/xx;20480.00;83.44;/var/x/x
2019-10-29-18-00/dev/xx;3584.00;840.43;/var/xx/x
2019-10-30-00-00/dev/xx;2048.00;411.59;/
2019-10-30-00-00/dev/xx;7168.00;6168.09;/usr
2019-10-30-00-00/dev/xx;3072.00;1036.1;/var
2019-10-30-00-00/dev/xx;5120.00;348.72;/tmp
2019-10-30-00-00/dev/xx;20480.00;2033.19;/home
2019-10-30-12-00;/dev/xx;5120.00;348.72;/tmp
2019-10-30-12-00;/dev/hd1;20480.00;2037.62;/home
2019-10-30-12-00;/dev/xx;512.00;0.43;/xx
2019-10-30-12-00;/dev/xx;3584.00;794.39;/xx
2019-10-30-12-00;/dev/xx;512.00;0.4;/var/xx/xx/xx
2019-10-30-12-00;/dev/xx;512.00;0.68;/xx
2019-10-30-12-00;/dev/xx;512.00;1.84;/var/xx/xx
2019-10-30-12-00;/dev/xx;512.00;80.08;/opt/xx/x
2019-10-30-12-00;/dev/xx;20480.00;83.44;/var/xx/xx
2019-10-30-12-00;/dev/x;3584.00;840.43;/var/xx/xx
For some lines I've 2019-10-29-18-00/dev and for some other lines, I've 2019-10-30-12-00;/dev/
I want to add the ; before the /dev/ where it is missing, so for that I use this sed command :
sed 's/\/dev/\;\/dev/'
But How I can apply this command for each lines where the ; is missing ? I try this :
for i in $(cat /home/xxx/xxx/xxx/*.txt | grep -e "00/dev/")
do
sed 's/\/dev/\;\/dev/' $i > $i
done
But it doesn't work... Can you help me ?
Could you please try following with GNU awkif you are ok with it.
awk -i inplace '/00\/dev\//{gsub(/00\/dev\//,"/00;/dev/")} 1' *.txt
sed solution: Tested with GNU sed for few files and it worked fine.
sed -i.bak '/00\/dev/s/00\/dev/00\;\/dev/g' *.txt
This might work for you (GNU sed & parallel):
parallel -q sed -i 's#;*/dev#;/dev#' ::: *.txt
or if you prefer:
sed -i 's#;*/dev#;/dev#' *.txt
Ignore lines with ;/dev.
sed '/;\/dev/{p;d}; s^/dev^;/dev^'
The /;\/dev/ check if the line has ;/dev. If it has ;/dev do: p - print the current line and d - start from the beginning.
You can use any character with s command in sed. Also, there is no need in escaping \;, just ;.
How I can apply this command for each lines where the ; is missing ? I try this
Don't edit the same file redirecting to the same file $i > $i. Think about it. How can you re-write and read from the same file at the same time? You can't, the resulting file will be in most cases empty, as the > $i will "execute" first making the file empty, then sed $i will start running and it will read an empty file. Use a temporary file sed ... "$i" > temp.txt; mv temp.txt "$i" or use gnu extension -i sed option to edit in place.
What you want to do really is:
grep -l '00/dev/' /home/xxx/xxx/xxx/*.txt |
xargs -n1 sed -i '/;\/dev/{p;d}; s^/dev^;/dev^'
grep -l prints list of files that match the pattern, then xargs for each single one -n1 of the files executes sed which -i edits files in place.
grep for filtering can be eliminated in your case, we can accomplish the task with a single sed command:
for f in $(cat /home/xxx/xxx/xxx/*.txt)
do
[[ -f "$f" ]] && sed -Ei '/00\/dev/ s/([^;])(\/dev)/\1;\2/' "$f"
done
The easiest way would be to adjust your regex so that it's looking a bit wider than '/dev/', e.g.
sed -i -E 's|([0-9])/dev|\1;/dev|'
(note that I'm taking advantage of sed's flexible approach to delimiters on substitute. Also, -E changes the group syntax)
Alternatively, sed lets you filter which lines it handles:
sed -i '/[0-9]\/dev/ s/\/dev/;/dev/'
This uses the same substitution you already have but only applied on lines that match the filter regex

Can find push the filenames of the found files into the pipe?

I would like to do a find in some dir, and do a awk on the files in this direcory, and then replace the original files by each result.
find dir | xargs cat | awk ... | mv ... > filename
So I need the filename (of each of the files found by find) in the last command. How can I do that?
I would use a loop, like:
for filename in `find . -name "*test_file*" -print0 | xargs -0`
do
# some processing, then
echo "what you like" > "$filename"
done
EDIT: as noted in the comments, the benefits of -print0 | xargs -0 are lost because of the for loop. And filenames containing a white space are still not handled correctly.
The following while loop would not handle unusual filenames neither (good to know it, though it was not in the question), but filenames with a standard white space at least, so it works better, indeed:
find . -name "*test*file*" -print > files_list
while IFS= read -r filename
do
# some process
echo "what you like" > "$filename"
done < files_list
You could do something like this (but I wouldn't recommend it at all).
find dir -print0 |
xargs -0 -n 2 awk -v OFS='\0' '<process the input and write to temporary file>
END {print "temporaryfile", FILENAME}' |
xargs -0 -n 2 mv
This passes the files to awk directly two at a time (which avoids the problem with your original where cat will get hundreds (perhaps more) files as arguments all at once and spit all their content at awk via standard input at once and thus lose their individual contents and filenames entirely).
It then has awk write the processed output to a temporary file and then outputs the temporary filename and the original filename where xargs picks them up (again two at a time) and runs mv on the pairs of temporary file/original file names.
As I said at the beginning however this is a terrible way to do this.
If you have a new enough version of GNU awk (version 4.1.0 or newer) then you could just use the -i (in-place) argument to awk and use (I believe):
find dir | xargs awk -i '......'
Without that I would use a while loop of the form in Bash FAQ 001 to read the find output line-by-line and operate on it in the loop.

Grep and inserting a string

I have a text file with a bunch of file paths such as -
web/index.erb
web/contact.erb
...
etc. I need to append before the
</head>
a line of code, to every single file, I'm trying to figure out how to do this without opening each file of course. I've heard sed, but I've never used it before..was hoping there would be a grep command maybe?
Thanks
xargs can be used to apply sed (or any other command) to each filename or argument in a list. So combining that with Rom1's answer gives:
xargs sed -i 's/<\/html>/myline\n<\/html>/g' < fileslist.txt
while read f ; do
sed -i '/<\/head>/i*iamthelineofcode*' "$f"
done <iamthefileoffiles.list
or
sed -i '/<\/head>/i*iamthelineofcode*' $(cat iamthefileoffiles.list)

Problems with Grep Command in bash script

I'm having some rather unusual problems using grep in a bash script. Below is an example of the bash script code that I'm using that exhibits the behaviour:
UNIQ_SCAN_INIT_POINT=1
cat "$FILE_BASENAME_LIST" | uniq -d >> $UNIQ_LIST
sed '/^$/d' $UNIQ_LIST >> $UNIQ_LIST_FINAL
UNIQ_LINE_COUNT=`wc -l $UNIQ_LIST_FINAL | cut -d \ -f 1`
while [ -n "`cat $UNIQ_LIST_FINAL | sed "$UNIQ_SCAN_INIT_POINT"'q;d'`" ]; do
CURRENT_LINE=`cat $UNIQ_LIST_FINAL | sed "$UNIQ_SCAN_INIT_POINT"'q;d'`
CURRENT_DUPECHK_FILE=$FILE_DUPEMATCH-$CURRENT_LINE
grep $CURRENT_LINE $FILE_LOCTN_LIST >> $CURRENT_DUPECHK_FILE
MATCH=`grep -c $CURRENT_LINE $FILE_BASENAME_LIST`
CMD_ECHO="$CURRENT_LINE matched $MATCH times," cmd_line_echo
echo "$CURRENT_DUPECHK_FILE" >> $FILE_DUPEMATCH_FILELIST
let UNIQ_SCAN_INIT_POINT=UNIQ_SCAN_INIT_POINT+1
done
On numerous occasions, when grepping for the current line in the file location list, it has put no output to the current dupechk file even though there have definitely been matches to the current line in the file location list (I ran the command in terminal with no issues).
I've rummaged around the internet to see if anyone else has had similar behaviour, and thus far all I have found is that it is something to do with buffered and unbuffered outputs from other commands operating before the grep command in the Bash script....
However no one seems to have found a solution, so basically I'm asking you guys if you have ever come across this, and any idea/tips/solutions to this problem...
Regards
Paul
The `problem' is the standard I/O library. When it is writing to a terminal
it is unbuffered, but if it is writing to a pipe then it sets up buffering.
try changing
CURRENT_LINE=`cat $UNIQ_LIST_FINAL | sed "$UNIQ_SCAN_INIT_POINT"'q;d'`
to
CURRENT LINE=`sed "$UNIQ_SCAN_INIT_POINT"'q;d' $UNIQ_LIST_FINAL`
Are there any directories with spaces in their names in $FILE_LOCTN_LIST? Because if they are, those spaces will need escaped somehow. Some combination of find and xargs can usually deal with that for you, especially xargs -0
A small bash script using md5sum and sort that detects duplicate files in the current directory:
CURRENT="" md5sum * |
sort |
while read md5sum filename;
do
[[ $CURRENT == $md5sum ]] && echo $filename is duplicate;
CURRENT=$md5sum;
done
you tagged linux, some i assume you have tools like GNU find,md5sum,uniq, sort etc. here's a simple example to find duplicate files
$ echo "hello world">file
$ md5sum file
6f5902ac237024bdd0c176cb93063dc4 file
$ cp file file1
$ md5sum file1
6f5902ac237024bdd0c176cb93063dc4 file1
$ echo "blah" > file2
$ md5sum file2
0d599f0ec05c3bda8c3b8a68c32a1b47 file2
$ find . -type f -exec md5sum "{}" \; |sort -n | uniq -w32 -D
6f5902ac237024bdd0c176cb93063dc4 ./file
6f5902ac237024bdd0c176cb93063dc4 ./file1

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