When I installed WSL for my computer I was very excited to have a more natively supported Linux system rather than using VirtualBox. However I get this error when I try to run it. Is there a reason why?
I am happy to give more information as required.
--4364:0:aspacem -1: ANON 0038000000-00383d5fff 4022272 r-x-- SmFixed d=0x000 i=25365 o=0 (0) m=0 /usr/lib/valgrind/memcheck-amd64-linux
--4364:0:aspacem Valgrind: FATAL: aspacem assertion failed:
--4364:0:aspacem segment_is_sane
--4364:0:aspacem at m_aspacemgr/aspacemgr-linux.c:1502 (add_segment)
--4364:0:aspacem Exiting now.
It's definitely possible
I've encountered some problems installing it directly with apt, however it can be installed manually with some very simple steps:
Download the source file: wget http://valgrind.org/downloads/valgrind-3.12.0.tar.bz2 (by the time you read this there could be a newer version)
Extract the archive: tar -xvjf valgrind-3.12.0.tar.bz2
Configure the installation process: cd into the exctracted folder valgrind-3.12.0 and then launch ./configure
Make: simply launch make while in the valgrind-3.12.0 folder
Check the dependencies: launch make check to see whether all the dependencies necessary for the installation are satisfied (e.g: you'll have to install g++, just launch sudo apt install g++)
Install valgrind: type sudo make install to install it
I had the same problem, the solution was to install Windows 10 creators update (version 1703), and reinstall Bash/WSL. Valgrind now works fine :)
Related
I am trying to work on a linux based external server. I need to install Homebrew and anaconda. So, I have installed anaconda as usual in my home directory. But when I tried to install homebrew, I get the following errors:
fatal: packfile .git/objects/pack/pack-9d2d97f367d3ebfa65a3b708b2d87333a8eb2bf0.pack cannot be mapped: Cannot allocate memory
error: https://github.com/Homebrew/homebrew-core did not send all necessary objects
Failed during: git fetch --force origin refs/heads/master:refs/remotes/origin/master
Ok, then I tried to install git using conda. However, I have encountered another error, which is:
libgcc_s.so.1 must be installed for pthread_cancel to work
I tried to install the GCC library using this link How do I compile and run GCC 4.9.x?
But then again, I encountered the problem of "cannot allocate memory". As I am working on an external cluster with many CPUs, I assume I have enough memory and space because I am working with many genomes.
Also, I cannot used sudo as I am not authorised to do that. I also tried to get the apt-get command but it shows that apt-get command not found.
Can anybody please help me to solve these problems?
Thank you.
I am trying to install dotnet-sdk-3.0 on linux AMI 2 ec2 instance (c6g). I am new to linux so tried couple of commands but nothing seems working for me. I tried below.
sudo rpm -Uvh https://packages.microsoft.com/config/centos/7/packages-microsoft-prod.rpm
sudo yum install dotnet-sdk-3.1
sudo yum install dotnet-sdk-3.0
When tried above i am getting below error.
[ec2-user#ip-0-0-0-0 console]$ sudo yum install dotnet-sdk-3.0
Loaded plugins: extras_suggestions, langpacks, priorities, update-motd
amzn2-core | 3.7 kB 00:00
amzn2extra-docker | 3.0 kB 00:00
amzn2extra-nginx1.12 | 1.3 kB 00:00
packages-microsoft-com-prod | 3.0 kB 00:00
packages-microsoft-com-prod/primary_db | 288 kB 00:00
No package dotnet-sdk-3.0 available.
Error: Nothing to do
Then i tried
mkdir -p "$HOME/dotnet" && tar zxf dotnet-sdk-3.0.100-linux-x64.tar.gz -C "$HOME/dotnet"
export DOTNET_ROOT=$HOME/dotnet
export PATH=$PATH:$HOME/dotnet
After this tried the dotnet command but got the error. dotnet: command not found
Finally tried below:
mkdir -p $HOME/dotnet && tar zxf dotnet-sdk-3.1.302-linux-arm64.tar.gz -C $HOME/dotnet
export DOTNET_ROOT=$HOME/dotnet
export PATH=$PATH:$HOME/dotnet
dotnet
dotnet --list-sdk
when i run this, i got below error
[ec2-user#ip-0-0-0-0 home]$ dotnet --list-sdk
Process terminated. Couldn't find a valid ICU package installed on the system. Set the configuration flag System.Globalization.Invariant to true if you want to run with no globalization support.
at System.Environment.FailFast(System.String)
at System.Globalization.GlobalizationMode.GetGlobalizationInvariantMode()
at System.Globalization.GlobalizationMode..cctor()
at System.Globalization.CultureData.CreateCultureWithInvariantData()
at System.Globalization.CultureData.get_Invariant()
at System.Globalization.CultureInfo..cctor()
at System.String.ToLowerInvariant()
at Microsoft.DotNet.PlatformAbstractions.RuntimeEnvironment.GetArch()
at Microsoft.DotNet.PlatformAbstractions.RuntimeEnvironment..cctor()
at Microsoft.DotNet.PlatformAbstractions.RuntimeEnvironment.GetRuntimeIdentifier()
at Microsoft.DotNet.Cli.MulticoreJitProfilePathCalculator.CalculateProfileRootPath()
at Microsoft.DotNet.Cli.MulticoreJitActivator.StartCliProfileOptimization()
at Microsoft.DotNet.Cli.MulticoreJitActivator.TryActivateMulticoreJit()
at Microsoft.DotNet.Cli.Program.Main(System.String[])
Aborted
also tried to run the dotnet <dotnet-project.dll> and received this error.
Failed to load ▒r▒), error: /home/ec2-user/dotnet/shared/Microsoft.NETCore.App/3.0.0/libhostpolicy.so: cannot open shared object file: No such file or directory
An error occurred while loading required library libhostpolicy.so from [/home/ec2-user/dotnet/shared/Microsoft.NETCore.App/3.0.0]
[ec2-user#ip-0-0-0-0 console]$
I have followed the microsoft document as well.
https://learn.microsoft.com/en-us/dotnet/core/install/linux-centos
Nothing seems working for me. Can someone please help me here, i am stuck from last 2 days.
Thanks in advance.
PS: I am completely newbie to linux.
I was able to get this to work on Amazon Linux 2 ARM64 with the following steps:
Download and build a recent version of International Components for Unicode. Amazon Linux 2 has version 50 available in the package manager, but dotnet looks for version 55 or later. When Amazon Linux updates this, this step won't be necessary anymore and can be replaced with sudo yum install icu.
Install gcc and python3 because they'll be needed for building libicu. It takes a few minutes to build the library. Amazon Linux 2 recently added libicu60 to the package manager, so you can simply install it with yum:
sudo yum -y install libicu60
Follow the instructions from Microsoft to install the dotnet sdk. Download the dotnet sdk from the Microsoft Website. You may need to download from this link to get the latest version, but the link below worked for me.
cd ~
wget https://download.visualstudio.microsoft.com/download/pr/5ee48114-19bf-4a28-89b6-37cab15ec3f2/f5d1f54ca93ceb8be7d8e37029c8e0f2/dotnet-sdk-3.1.302-linux-arm64.tar.gz
mkdir -p $HOME/dotnet && tar zxf ~/dotnet-sdk-3.1.302-linux-arm64.tar.gz -C $HOME/dotnet
export DOTNET_ROOT=$HOME/dotnet
export PATH=$PATH:$HOME/dotnet
Test that it's working
[ec2-user#ip-172-31-69-243 ~]$ dotnet --list-sdks
3.1.302 [/home/ec2-user/dotnet/sdk]
You are running this on arm64/aarch64. It's a relatively new architecture. It's also incompatible with the Intel 64-bit architecture (x86_64 or x64). So you need to watch out for that.
Installing via RPM
Edit: So, this is just not going to work if you want to use RPM packages.
Quoting https://learn.microsoft.com/en-us/dotnet/core/install/linux-centos:
Package manager installs are only supported on the x64 architecture. Other architectures, such as ARM, must manually install the .NET Core SDK or .NET Core Runtime. For more information, see the manually install section below.
You are using aarch64/arm64. You are not using x64, so this is not going to work.
You need to use the tarball installation method.
Out of date suggestions:
I am trying to install dotnet-sdk-3.0 on linux AMI 2 ec2 instance (c6g).
sudo rpm -Uvh https://packages.microsoft.com/config/centos/7/packages-microsoft-prod.rpm
You are running Amazon Linux 2, right? As the URL here says, this is for CentOS 7. It may (or it may not) work on your Linux distribution. Anyway, try it out.
$ sudo yum install dotnet-sdk-3.0
No package dotnet-sdk-3.0 available.
Error: Nothing to do
The error says that it can't find this package. Maybe a package with this name doesn't exist? Maybe you are using the wrong name? Try using yum list to find the correct name:
sudo yum list 'dotnet-sdk*'
It should show you a list of packages, including names like dotnet-sdk-3.0.103. You can install that package by name, then:
sudo yum install dotnet-sdk-3.0.103
If that doesn't work, try another package name from yum list and try installing that.
Installing manually
Then i tried
mkdir -p "$HOME/dotnet" && tar zxf dotnet-sdk-3.0.100-linux-x64.tar.gz -C "$HOME/dotnet"
export DOTNET_ROOT=$HOME/dotnet
export PATH=$PATH:$HOME/dotnet
After this tried the dotnet command but got the error. dotnet: command not found
You are running an aarch64 machine. You need to use the arm64 tarball, not the x64 tarball. The x64 tarball is for an Intel processor. It will not work on an ARM processor.
That's surprising. Let me break down what this set of steps is doing:
mkdir -p "$HOME/dotnet" creates a directory named dotnet in your home directory
tar xf ... extracts the dotnet SDK tarball in the dotnet directory you created in step 1
export DOTNET_ROOT=$HOME/dotnet defines an environment variable DOTNET_ROOT. .NET Runtime needs it; I am a bit fuzzy myself on why
export PATH=$PATH:$HOME/dotnet adds the directory you installed the .NET SDK into to the environment variable PATH. PATH is a list of locations that the OS uses to search for a command that you enter. For example, when you type dotnet in the command line it searches for dotnet executable (think dotnet.exe on Windows) in this list of directories.
So let's try and debug it one by one:
Does the directory dotnet exist in your main home directory (aka $HOME)? Can you cd ~/dotnet? Does that work?
After you extract the tarball, do you see a file named dotnet in the dotnet directory in your $HOME? Does ls $HOME/dotnet/dotnet work? What does it show you?
What does echo $PATH show you? Does it include that dotnet directory in the value?
If you run which dotnet, does it find the dotnet executable in your main $HOME directory?
Running the SDK
when i run this, i got below error
[ec2-user#ip-0-0-0-0 home]$ dotnet --list-sdk
Process terminated. Couldn't find a valid ICU package installed on the system. Set the configuration flag System.Globalization.Invariant to true if you want to run with no globalization support
The error includes this phrase: Couldn't find a valid ICU package installed on the system.
It really means that. You need to install the ICU package for your Linux distribution:
sudo yum install libicu
And then try running dotnet --list-sdk again.
Error Running dll
Failed to load ▒r▒), error: /home/ec2-user/dotnet/shared/Microsoft.NETCore.App/3.0.0/libhostpolicy.so: cannot open shared object file: No such file or directory
An error occurred while loading required library libhostpolicy.so from [/home/ec2-user/dotnet/shared/Microsoft.NETCore.App/3.0.0]
This is strange. It says it can't find a file that should be part of the .NET Core installation.
What does dotnet --list-runtimes say? Does it show the 3.0.0 runtime installed? If not, that means your installation is messed up. You should probably install .NET Core 3.0 again. (Or better yet, install 3.1 because 3.0 has been end-of-life'd).
Does the file /home/ec2-user/dotnet/shared/Microsoft.NETCore.App/3.0.0/libhostpolicy.so exist? If it doesn't it's the same problem as above: your installation is messed up.
What does file /home/ec2-user/dotnet/shared/Microsoft.NETCore.App/3.0.0/libhostpolicy.so say? Is it an ELF 64-bit LSB shared object?
The output is: ELF 64-bit LSB shared object, x86-64
This is a x86-64 file! In other words, you have (somehow) installed an linux-x64 (Intel 64-bit architecture) runtime. Not too surprisingly, it doens't work on the ARM 64 bit architecture. You need to delete this and re-install the SDK. I suggest just blowing away your current installation (rm -rf $HOME/dotnet) and install the linux-arm64 SDK again.
Right now I am running Ubuntu 14.04 in VMware trying to make a Live CD with a tool called UCK. I am in the process where I can customize and add my own packages and tools to my live CD. I want to install and setup Autopsy so I began with the process of downloading both Sleuthkit and Autopsy. While trying to install those I have been told I have first have to use ./configure according to this guide: https://shankaraman.wordpress.com/2012/11/16/how-to-install-autopsy-and-sleuthkit-in-ubuntu/
and I got the following error: 'Configure: error: missing libstdc++'
Does anyone know how to fix this? I haven't found a solution on the internet yet.
Fixed it by running: sudo apt-get install build-essential -_-.
I have R 3.4.1.1 on my computer (Linux).
I want to install R version 2.14.1 since the package Rmosek does not work in newer version.
I have downloaded the R-2.14.2.tar.gz from Cran.
My problem is that I do not understand the INSTALL instructions,
It says to unpack the R sources and go to the top directory and issue the following commands:
./configure
make
I wrote the following in a terminal:
tar -zxvf R-2.14.2.tar.gz
cd Downloads
cd R-2.14.2
./configure
It is run but finally gives the error:
configure: error: --with-x=yes (default) and X11 headers/libs are not available
make
and it gives the error:
make: *** No targets specified and no makefile found. Stop.
The file explains that If my make is not called `make', set the environment variable MAKE to
its name, and use that name throughout these instructions. I really do not know how I should do it since I am new in Linux.
Is there any other instruction with more explanation? I would be very thankful in advance for your help or guidances.
Regards,
Shima.
This is answered in detail in the R installation and administration guide,
http://cran.r-project.org/doc/manuals/R-admin.html#Essential-programs-and-libraries
Unless you do not want to view graphs on-screen (or use a Mac) you
need ‘X11’ installed, including its headers and client libraries. For
recent Fedora distributions it means (at least) RPMs ‘libX11’,
‘libX11-devel’, ‘libXt’ and ‘libXt-devel’. On Debian we recommend the
meta-package ‘xorg-dev’. If you really do not want these you will need
to explicitly configure R without X11, using --with-x=no.
More specifically, for Ubuntu, this means:
sudo apt-get install xorg-dev
and then proceed with compiling and installing R.
If you have to compile R in your system and install you should have libx11-dev package installed in Ubunut.Can you check whether this package is installed or not.
Otherwise you can configure the source with this option as a work around solution only in the case if you are not going to use any GUI functionality in R.
./configure --with-x=no
You need to install these libraries:
sudo apt-get install -y libx11-dev \
xorg-dev \
libcurl4-openssl-dev
Then run:
./configure
make
And then it should work.
Good luck!
I've installed Android Studio and tried to run my first project in it, and I've got following error:
Error Output was: /home/user/android-studio/sdk/platform-tools/adb: error while loading shared libraries: libncurses.so.5: cannot open shared object file: No such file or directory
I've already tried to run
sudo ldconfig
but it doesnt help. I've recently installed libncurses (before using android studio).
What should I do?
If libncurses is not installed then install it and try again.
for 32-bit binaries : sudo apt-get install libncurses5:i386
for 64-bit binaries :
sudo apt-get install libncurses5
Also install the collection of libraries by using this command,
sudo apt-get install ia32-libs
error while loading shared libraries: libncurses.so.5
If you see this, your distro probably has a newer version of libncurse installed. First find out what version of libncurses your distro has:
$ ls -1 /usr/lib/libncurses*
/usr/lib/libncurses.so
/usr/lib/libncurses++.so
/usr/lib/libncurses++w.so
/usr/lib/libncursesw.so
/usr/lib/libncurses++w.so.6
/usr/lib/libncursesw.so.6
/usr/lib/libncurses++w.so.6.0
/usr/lib/libncursesw.so.6.0
In this case, we are dealing with version 6, so we make two symlinks:
$ sudo ln -s /usr/lib/libncursesw.so.6.0 /usr/lib/libncurses.so.5
$ sudo ln -s /usr/lib/libncursesw.so.6.0 /usr/lib/libtinfo.so.5
After this, the program should run normally.
If you are absolutely sure that libncurses, aka ncurses, is installed, as in you've done a successful 'ls' of the library, then perhaps you are running a 64 bit Linux operating system and only have the 64 bit libncurses installed, when the program that is running (adb) is 32 bit.
If so, a 32 bit program can't link to a 64 bit library (and won't locate it anyway), so you might have to install libcurses, or ncurses (32 bit version). Likewise, if you are running a 64 bit adb, perhaps your ncurses is 32 bit (a possible but less likely scenario).
For Redhat Linux 8 try this:
sudo yum install libncurses*
On Arch Linux you can install ncurses5-compat-libs AUR package.
FYI it is mentioned in Arch Wiki android page, just in case if you'll need some other dependencies for Android Studio: https://wiki.archlinux.org/index.php/Android
For Redhat Linux this helped,
sudo yum install ncurses-compat-libs
In Fedora 28 use:
sudo dnf install ncurses-compat-libs
I solved the issue using
ln -s libncursesw.so.5 /lib/x86_64-linux-gnu/libncursesw.so.6
on ubunutu 18.10
On Arch, i fix like this:
sudo ln -s /usr/lib/libncursesw.so.6 /usr/lib/libtinfo.so.6
To install ncurses-compat-libs on Fedora 24 helped me on this issue
(unable to start adb error while loading shared libraries: libncurses.so.5)
Your system likely does not provide the ncurses library at the version android studio uses. My arch linux install only had ncurses 6 but android studio needs version 5.
You could check if your distribution has a compatability package, or use the solution that Rahmat Aligos suggested.
Mixaz's above answer worked for me. However I had issues installing the package because of PGP check failures. Installing it by skipping the signature worked, you could try this :
yaourt --m-arg "--skipchecksums --skippgpcheck" -Sb <your-package>