When I install fastqc from the repositories with the command:
sudo apt-get install fastqc
the version 0.11.2 is installed. However there is a newer version here:
https://launchpad.net/ubuntu/+source/fastqc
which is 0.11.5.
How can I upgrade to the latest version on Ubuntu 14.04 Trusty?
I could update it like this:
wget https://launchpad.net/ubuntu/+archive/primary/+files/fastqc_0.11.5+dfsg-3_all.deb
sudo dpkg -i fastqc_0.11.5+dfsg-3_all.deb
sudo apt-get install -f
Related
Installing .NET SDK on Ubuntu 20.04 with the commands listed in the Install .NET on Ubuntu docs:
wget https://packages.microsoft.com/config/ubuntu/20.04/packages-microsoft-prod.deb -O packages-microsoft-prod.deb
sudo dpkg -i packages-microsoft-prod.deb
rm packages-microsoft-prod.deb
sudo apt-get update; \
sudo apt-get install -y apt-transport-https && \
sudo apt-get update && \
sudo apt-get install -y dotnet-sdk-6.0
produces no dotnet executable.
Command 'dotnet' not found, but can be installed with:
sudo snap install dotnet-sdk
Listing files from the package:
dpkg -L dotnet-sdk-6.0 | grep -P "dotnet$"
gives
/usr/share/dotnet
The /usr/share/dotnet directory contains no executable. I compared this result with my other Ubuntu installation where I installed dotnet ages ago, and there it is installed in /usr/share/dotnet but there exists a /usr/share/dotnet/dotnet executable.
What am I doing wrong? How to install dotnet on Ubuntu with APT?
Using snap is not an option.
sudo apt reinstall dotnet-host and then sudo apt install dotnet-sdk-6.0 fixed the issue.
See: https://github.com/dotnet/installer/issues/12939
dpkg -S /usr/bin/dotnet says that it was created by dotnet-host.
So maybe that package is missing in dotnet-sdk-6.0 and must be installed separately. I imagine they will fix it in some future version.
tl;dr $ sudo apt install dotnet-host
I'm using Ubuntu 16.04 with an already installed libhwloc5 package of version 1.11.2. I want to install it with version 1.11.5 or above. I've tried to remove it and run
sudo apt-get update
then I run
sudo apt-get install libhwloc5
but it installs the same old version, how can I specify the version of installation?
You could specify the version of your package like this:
sudo apt-get install libhwloc5=<version-number-here>
Example: apt-get install virtualbox=5.0.18-dfsg-2build1
i'm trying to install nodejs in Ubuntu 18.10 but it returns some error.
The following packages have unmet dependencies:
nodejs : Depends: python-minimal but it is not going to be installed
E: Unable to correct problems, you have held broken packages.
Above is the message i get while install node Js by cammand: sudo apt-get install nodejs.
As described in this link:
Install node version manager:
curl -o- https://raw.githubusercontent.com/creationix/nvm/v0.32.0/install.sh | bash
Activate nvm:
. ~/.nvm/nvm.sh
Use nvm to install the version of node you want:
nvm install 4.4.5
Test that Node.js is installed:
node -e "console.log('Running Node.js ' + process.version)"
The recommended way to install node under Ubuntu appears to be to use the archives provided by NodeSource.
Their instructions are to run these shell commands to, presumably, set up a PPM and install a current version of node from that source.
curl -fsSL https://deb.nodesource.com/setup_16.x | sudo -E bash -
sudo apt-get install -y nodejs
First you need to install python 2.7 using following commands
sudo add-apt-repository ppa:deadsnakes/ppa
sudo apt-get update
sudo apt-get install python2.7
then install nodejs
sudo apt-get install nodejs
Using Ubuntu
curl -fsSL https://deb.nodesource.com/setup_15.x | sudo -E bash -
sudo apt-get install -y nodejs
Using Debian, as root
curl -fsSL https://deb.nodesource.com/setup_15.x | bash -
apt-get install -y nodejs
I would like to install cmake the latest version, on Linux environment. I have cmake version 3.5 installed and is not supported by some applications. I tried to upgrade it by uninstalling the current version. But when I reinstall with sudo apt-get install cmake, I get the same version 3.5 re-installed. How do I install the latest version with sudo apt-get install ....?
As far as I know the best way to get the latest CMake version installed on any Linux is not by apt but using pip.
Remove the apt cmake and install the latest version from pip which can easily keep up-to-date.
apt remove cmake -y
pip install cmake --upgrade
Edit: As GNUton has pointed out, the following only works on Ubuntu 16.04 and 18.04(Checked on June 2019).
Now CMake developer team in Kitware Inc provides APT repositiory. It allows you to install latest CMake via apt-get.
If you are using a minimal Ubuntu image or a Docker image, you may need to install the following packages:
sudo apt-get update
sudo apt-get install apt-transport-https ca-certificates gnupg \
software-properties-common wget
Obtain a copy of our signing key:
wget -qO - https://apt.kitware.com/keys/kitware-archive-latest.asc |
sudo apt-key add -
Add the repository to your sources list and update.
For Ubuntu Bionic Beaver (18.04):
sudo apt-add-repository 'deb https://apt.kitware.com/ubuntu/ bionic main'
sudo apt-get update
For Ubuntu Xenial Xerus (16.04):
sudo apt-add-repository 'deb https://apt.kitware.com/ubuntu/ xenial main'
sudo apt-get update
... Optional steps. See details in reference.
... Optional steps. See details in reference.
Now call
sudo apt-get install cmake
Reference: Kitware APT Repository.
You can try the following steps that have worked for me on Ubuntu 18.04.3 LTS as OS of the NVIDIA jetson Nano to get the last version of cmake "cmake-3.14.0" from https://cmake.org/download/.
Delete the installed version in your system
sudo apt purge cmake
Download cmake3.13.4 source
wget https://github.com/Kitware/CMake/releases/download/v3.13.4/cmake-3.13.4.tar.gz
Extract files
tar zxvf cmake-3.13.4.tar.gz
Execute the following commands in this order to build it
cd cmake-3.13.4
sudo ./bootstrap
sudo make
sudo make install
Verify the version is installed correctly
cmake --version
Following the comments made on how to Install the latest CMake version and to post the answer for this question:
Ans:
This depends with Ubuntu OS version currently installed on your PC or Mac. If you have the following Ubuntu OS version then you have this CMake installed or that you could install and reinstall with "sudo apt-get install cmake". Even if you uninstall your version and try to reinstall later version.
Ubuntu 16.04 ships with cmake-3.5.1
Ubuntu 17.10 ships with cmake-3.9.1
Ubuntu 18.04 ships with cmake-3.10.2
Ubuntu 20.04 ships with cmake-3.16.3
Ubuntu 21.04 ships with cmake-3.18.4
Now if you have Ubuntu 16.04 installed and you want cmake-3.10, there is OS problem since you can only install and reinstalled cmake-3.5.1. To get cmake-3.10 or any other version, you have to download and install the package from https://packages.ubuntu.com/. Once you find the latest version of cmake .targz files, you have to build it yourself from the command line.
For CentOS/RHEL you can help these following steps:
yum -y install python-pip
pip install cmake --upgrade
If you are using Google Colab like me and wanted a higher version of cmake in it. Then do the following,
!pip uninstall cmake
!pip install cmake
This will install cmake 3.22 instead of the default version 3.12
pip install cmake --upgrade
if the following occurs after cmake .. :
CMake Error: Could not find CMAKE_ROOT !!!
CMake has most likely not been installed correctly.
Modules directory not found in
/.../.../...
CMake Error: Error executing cmake::LoadCache(). Aborting.
then try
hash -r
the following worked for me:
sudo apt remove cmake
pip install cmake --upgrade
then, I exited the terminal and again entered to check the version with cmake --version command
3.20.5 in ubuntu 16.04
wget -O - https://apt.kitware.com/keys/kitware-archive-latest.asc 2>/dev/null | gpg --dearmor - | sudo tee /etc/apt/trusted.gpg.d/kitware.gpg >/dev/null
sudo apt-add-repository 'deb https://apt.kitware.com/ubuntu/ xenial main'
sudo apt update
apt-key adv --keyserver keyserver.ubuntu.com --recv-keys DE19EB17684BA42D
sudo apt install cmake cmake-qt-gui cmake-curses-gui
yum remove cmake
wget https://github.com/Kitware/CMake/releases/download/v3.13.4/cmake-3.13.4.tar.gz
tar zxvf cmake-3.13.4.tar.gz
cd cmake-3.13.4
sudo ./bootstrap --prefix=/usr/local
sudo make
sudo make install
vi ~/.bash_profile
...
# PATH=$PATH:$HOME/bin
PATH=/usr/local/bin:$PATH:$HOME/bin
export PATH
source ~/.bash_profile
cmake --version
vi ~/.bash_profile
centos7 it help me
In case someone still finds it hard to remove cmake from their machine.
This command works for me (requires sudo permissions):
$ sudo find / -name "cmake" | xargs -I % sudo rm -rf "%"
I was recently going through the version of node in my ubuntu 16.04 when node -v command was used it shows me version 6.9.1 but when nodejs -v it shows 6.9.2 previously before using this commands npm update command was used.
Now what's these difference in node -v and nodejs -v? and how to update to the latest LTS version of node/nodejs?
To update, you can install n
sudo npm install -g n
Then just :
sudo n latest
or a specific version
sudo n 8.9.0
According to official docs to install node on Debian and Ubuntu based distributions:
node v12 (Old)
curl -sL https://deb.nodesource.com/setup_12.x | sudo -E bash -
sudo apt-get install -y nodejs
node v14 (For new users: install this one):
curl -sL https://deb.nodesource.com/setup_14.x | sudo -E bash -
sudo apt-get install -y nodejs
node v15 (Current version):
curl -sL https://deb.nodesource.com/setup_15.x | sudo -E bash -
sudo apt-get install -y nodejs
Other older versions:
Just replace the desired version number in the link above.
Optional: install build tools
To compile and install native packages
sudo apt-get install -y build-essential
To update node to the latest version just:
sudo apt update
sudo apt upgrade
To keep npm updated
sudo npm i -g npm
To find out other versions try npm info npm and in versions find your desired version and replace [version-tag] with that version tag in npm i -g npm#[version-tag]
And I also recommend trying yarn instead of npm
Using Node Version Manager (NVM):
Install it:
wget -qO- https://raw.githubusercontent.com/creationix/nvm/v0.33.11/install.sh | bash
Test your installation:
close your current terminal, open a new terminal, and run:
command -v nvm
Use it to install as many versions as u like:
nvm install 8 # Install nodejs 8
nvm install --lts # Install latest LTS (Long Term Support) version
List installed versions:
nvm ls
Use a specific version:
nvm use 8 # Use this version on this shell
Set defaults:
nvm alias default 8 # Default to nodejs 8 on this shell
nvm alias default node # always use latest available as default nodejs for all shells
Use n module from npm in order to upgrade node
sudo npm cache clean -f
sudo npm install -g n
sudo n stable
To upgrade to latest version (and not current stable) version, you can use
sudo n latest
Undo :
sudo apt-get install --reinstall nodejs-legacy # fix /usr/bin/node
sudo n rm 6.0.0 # replace number with version of Node that was installed
sudo npm uninstall -g n
Use sudo apt-get install --only-upgrade nodejs to upgrade node (and only upgrade node) using the package manager.
The package name is nodejs, see https://stackoverflow.com/a/18130296/4578017 for details.
You can also use nvm to install and update node.
curl -o- https://raw.githubusercontent.com/creationix/nvm/v0.32.1/install.sh | bash
Then restart the terminal, use nvm ls-remote to get latest version list of node, and use nvm install lts/* to install latest LTS version.
nvm is more recommended way to install or update node, even if you are not going to switch versions.
Difference: When I first installed node, it installed as 'nodejs'. When I upgraded it, it created 'node'. By executing node, we are actually executing nodejs. Node is just a reference to nodejs.
From my experience, when I upgraded, it affected both the versions (as it is supposed to). When I do nodejs -v or node -v, I get the new version.
Upgrading: npm update is used to update the packages in the current directory. Check https://docs.npmjs.com/cli/update
To upgrade node version, based on the OS you are using, follow the commands here https://nodejs.org/en/download/package-manager/
Please refer nodejs official site for installation instructions at the following link
https://nodejs.org/en/download/package-manager/#debian-and-ubuntu-based-linux-distributions
Anyway, please find the commands to install nodejs version 10 in ubuntu below.
curl -sL https://deb.nodesource.com/setup_8.x | sudo -E bash -
sudo apt-get install -y nodejs
sudo npm install npm#latest -g
Try this:
Edit or create the file :nodesource.list
sudo gedit /etc/apt/sources.list.d/nodesource.list
Insert this text:
deb https://deb.nodesource.com/node_10.x bionic main
deb-src https://deb.nodesource.com/node_10.x bionic main
Run these commands:
curl -s https://deb.nodesource.com/gpgkey/nodesource.gpg.key | apt-key add -
sudo sh -c "echo deb https://deb.nodesource.com/node_10.x cosmic main /etc/apt/sources.list.d/nodesource.list"
sudo apt-get update
sudo apt-get install nodejs
node and nodejs are two different packages in Ubuntu software, node is an up-to-date snap package, whereas nodejs is an older version of apt package
to update to the latest LTS version of node:
Install NVM on Ubuntu 22.04|20.04|18.04 with the command:
wget https://raw.githubusercontent.com/nvm-sh/nvm/master/install.sh
bash install.sh
After the installation, source the profile:
source ~/.bashrc
Verify the NVM installation:
nvm -v
Install Node.js 18 LTS on Ubuntu 22.04|20.04|18.04 as shown:
nvm install v18
Install the latest version using the command:
nvm install node
Once complete, verify the installation:
node -v
Run these commands:
sudo apt-get update
sudo apt-get install build-essential libssl-dev
curl -o- https://raw.githubusercontent.com/creationix/nvm/v0.33.11/install.sh | bash
source ~/.profile
nvm ls-remote
nvm install v9.10.1
nvm use v9.10.1
node -v
Update latest version Nodejs :
sudo npm cache clean -f
sudo npm install -g n
sudo n stable
I am using Ubuntu 20.04.4 LTS and got the issue during upgrade node js. The current LTS version is 16.14.2 According to the NodeSource Node.js Binary Distributions document
Node.js v16.x:
curl -fsSL https://deb.nodesource.com/setup_16.x | sudo -E bash -
sudo apt-get install -y nodejs
if you still get the issue you can also try the following:
curl -fsSL https://deb.nodesource.com/setup_16.x | sudo -E bash -
apt-get update
sudo npm cache clean -f
sudo apt-get install -y nodejs
Node.js Current:
It's work for me..
Using Ubuntu
curl -fsSL https://deb.nodesource.com/setup_current.x | sudo -E bash -
sudo apt-get install -y nodejs
Using Debian, as root
curl -fsSL https://deb.nodesource.com/setup_current.x | bash -
apt-get install -y nodejs
I am also facing problem while going to install react app, so i found the solution,
npx create-react-app shodkk
First install the npm latest version using
sudo npm install -g npm#8.4.1
So to install the node 16.x you need to go terminal and type
curl -fsSL https://deb.nodesource.com/setup_16.x | sudo -E bash -
Doing this you install the node LTS that is 16.14.o at the time of writing this post.
Try this 2-3 times, also do the
sudo apt-get update
Then Now install the package using
sudo apt-get install -y nodejs
At last this helps you remove any unwanted package, that remains after updating that is depreciated and need not be there, So use autoremove command.
sudo apt autoremove
So if like the post, Upvote and motivate me to write more, thanks, givingBack to the Community.
Use n module from npm in order to upgrade node
sudo npm cache clean -f
sudo npm install -g n
sudo n stable
To upgrade to latest version (and not current stable) version, you can use
sudo n latest
To undo:
sudo apt-get install --reinstall nodejs-legacy # fix /usr/bin/node
sudo n rm 6.0.0 # replace number with version of Node that was installed
sudo npm uninstall -g n