For some reason sometimes the cluster seems to misbehave for I suddenly see surge in number of YARN jobs.We are using HDInsight Linux based Hadoop cluster. We run Azure Data Factory jobs to basically execute some hive script pointing to this cluster. Generally average number of YARN apps at any given time are like 50 running and 40-50 pending. None uses this cluster for ad-hoc query execution. But once in few days we notice something weird. Suddenly number of Yarn apps start increasing, both running as well as pending, but especially pending apps. So this number goes more than 100 for running Yarn apps and as for pending it is more than 400 or sometimes even 500+. We have a script that kills all Yarn apps one by one but it takes long time, and that too is not really a solution. From our experience we found that the only solution, when it happens, is to delete and recreate the cluster. It may be possible that for some time cluster's response time is delayed (Hive component especially) but in that case even if ADF keeps retrying several times if a slice is failing, is it possible that the cluster is storing all the supposedly failed slice execution requests (according to ADF) in a pool and trying to run when it can? That's probably the only explanation why it could be happening. Has anyone faced this issue?
Check if all the running jobs in the default queue are Templeton jobs. If so, then your queue is deadlocked.
Azure Data factory uses WebHCat (Templeton) to submit jobs to HDInsight. WebHCat spins up a parent Templeton job which then submits a child job which is the actual Hive script you are trying to run. The yarn queue can get deadlocked if there are too many parents jobs at one time filling up the cluster capacity that no child job (the actual work) is able to spin up an Application Master, thus no work is actually being done. Note that if you kill the Templeton job this will result in Data Factory marking the time slice as completed even though obviously it was not.
If you are already in a deadlock, you can try adjusting the Maximum AM Resource from the default 33% to something higher and/or scaling up your cluster. The goal is to be able to allow some of the pending child jobs to run and slowly draining the queue.
As a correct long term fix, you need to configure WebHCat so that parent templeton job is submitted to a separate Yarn queue. You can do this by (1) creating a separate yarn queue and (2) set templeton.hadoop.queue.name to the newly created queue.
To create queue you can do this via the Ambari > Yarn Queue Manager.
To update WebHCat config via Ambari go to Hive tab > Advanced > Advanced WebHCat-site, and update the config value there.
More info on WebHCat config:
https://cwiki.apache.org/confluence/display/Hive/WebHCat+Configure
Related
We're using AWS EMR for our spark jobs. All our jobs are submitted in yarn cluster mode, so the driver will run in one of the cluster nodes. We use on-demand node for master, and spot-instances for the core nodes. Now, although we almost always choose instances with < 5% interruption rate, sometimes it so happens that a significant fraction of our cluster nodes get terminated prematurely (probably because of higher demands).
So, I was wondering, in the above situation, what happens if a node containing the driver process goes down? Is there any chance of recovery for the spark job in that case? Or is the job gone forever?
The Spark driver is a single point of failure because it holds all cluster state for the running App.
In practice non-ephemeral storage can be used for check-pointing batch Apps after expensive expensive transformations. That said, trying to re-start after such a situation can be done, but when I looked into it, it is quite difficult to say the least. I asked such a question under my name some time ago, you can find it. I am quite technical but felt: gosh what a lot of hard work.
So, the recovery means rolling your own stuff, or accepting a re-run. Since I last evaluated EMR I see that the driver can run on the Master and that can be failed-over, but that is not the same thing as far as I can see, nor what you wish.
EMR has node leveling for CORE nodes in Yarn. Your spark driver/ Application master only gets created in CORE nodes. And HDFS also resides in CORE nodes only.
So to handle your situation in a best way, you may consider to use both CORE and TASK group.
What you can do to tackle this -
MASTER: On-demand
CORE: On-demand. Minimum no of Instances can be 1.
TASK: Spot with autoscaling with minimal EBS volume. Minimum no of Instances can be 0 this case.
This will reduce your cost also ensure that node containing the driver process never goes down.
https://docs.aws.amazon.com/emr/latest/ManagementGuide/emr-master-core-task-nodes.html
I wanted to know when it is safe to remove a node from a machine from a cluster.
My assumption is that it could be safe to remove a machine if the machine does not have any containers, and it does not store any useful data.
By the APIs at https://hadoop.apache.org/docs/current/hadoop-yarn/hadoop-yarn-site/ResourceManagerRest.html, we can do
GET http://<rm http address:port>/ws/v1/cluster/nodes
to get the information of each node like
<node>
<rack>/default-rack</rack>
<state>RUNNING</state>
<id>host1.domain.com:54158</id>
<nodeHostName>host1.domain.com</nodeHostName>
<nodeHTTPAddress>host1.domain.com:8042</nodeHTTPAddress>
<lastHealthUpdate>1476995346399</lastHealthUpdate>
<version>3.0.0-SNAPSHOT</version>
<healthReport></healthReport>
<numContainers>0</numContainers>
<usedMemoryMB>0</usedMemoryMB>
<availMemoryMB>8192</availMemoryMB>
<usedVirtualCores>0</usedVirtualCores>
<availableVirtualCores>8</availableVirtualCores>
<resourceUtilization>
<nodePhysicalMemoryMB>1027</nodePhysicalMemoryMB>
<nodeVirtualMemoryMB>1027</nodeVirtualMemoryMB>
<nodeCPUUsage>0.006664445623755455</nodeCPUUsage>
<aggregatedContainersPhysicalMemoryMB>0</aggregatedContainersPhysicalMemoryMB>
<aggregatedContainersVirtualMemoryMB>0</aggregatedContainersVirtualMemoryMB>
<containersCPUUsage>0.0</containersCPUUsage>
</resourceUtilization>
</node>
If numContainers is 0, I assume it does not run containers. However can it still store any data on disk that other downstream tasks can read?
I did not get if Spark lets us know this. I assume if a machine still stores some data useful for the running job, the machine may maintain a heart beat with Spark Driver or some central controller? Can we check this by scanning tcp or udp connections?
Is there any other way to check if a machine in a Spark cluster participates a job?
I am not sure whether you just want to know if a node is running any task (is that's what you mean by 'participate') or you want to know if it is safe to remove a node from the Spark cluster
I will try to explain the latter point.
Spark has the ability to recover from the failure, which also applies to any node being removed from the cluster.
The node removed can be an executor or an application master.
If an application master is removed, the entire job fails. But is you are using yarn as a resource manager, the job is retried and yarn gives a new application master. The number if retries is configured in :
yarn.resourcemanager.am.max-attempts
By default, this value is 2
If a node on which a task is running is removed, the resource manager (which is handled by yarn) will stop getting heartbeats from that node. Application master will know it is supposed to reschedule the failed job as it will no longer receive progress status from the previous node. It will then request resource manager for resources and then reschedule the job.
As far as data on these nodes is concerned, you need to understand how the tasks and their output are handled. Every node has its own local storage to store the output of the tasks running on them. After the tasks are run successfully, the OutputCommitter will move the output from local storage to the shared storage (HDFS) of the job from where the data is picked for the next step of the job.
When a task fails (may be because the node that runs this job failed or was removed), the task is rerun on another available node.
In fact, the application master will also rerun the successfully run tasks on this node as their output stored on the node's local storage will not longer be available.
I have a spark job that periodically hangs, leaving my AWS EMR cluster in a state where an application is RUNNING but really the cluster is stuck. I know that if my job doesn't get stuck, it'll finish in 5 hours or less. If it's still running after that, it's a sign that the job is stuck. Yarn and the Spark UI is still responsive, the it's just that an executor gets stuck on a task.
Background: I'm using an ephemeral EMR cluster that performs only one step before terminating, so it's not a problem to kill it off if I notice this job is hanging.
What's the easiest way to kill the task, job, or cluster in this case? Ideally this would not involve setting up some extra service to monitor the job -- ideally there would be some kind of spark / yarn / emr setting I could use.
Note: I've tried using spark speculation to unblock the stuck spark job, but that doesn't help.
EMR has a Bootstrap Actions feature where you can run scripts that start up when initializing the cluster. I've used this feature along with a startup script that monitors how long the cluster has been online and terminates itself after a certain time.
I use a script based off this one for the bootstrap action. https://github.com/thomhopmans/themarketingtechnologist/blob/master/6_deploy_spark_cluster_on_aws/files/terminate_idle_cluster.sh
Basically make a script that checks /proc/uptime to see how long the EC2 machine has been online and after uptime surpasses your time limit you can send a shutdown command to the cluster.
I have a pyspark job that I submit to a standalone spark cluster - this is an auto scaling cluster on ec2 boxes so when jobs are submitted and not enough nodes are available, after a few minutes a few more boxes spin up and become available.
We have a #timeout decorator on the main part of the spark job to timeout and error when it's exceeded a certain time threshold (put in place because of some jobs hanging). The issue is that sometimes a job may not have gotten to actually starting because its waiting on resources yet #timeout function is evaluated and jobs error out as a result.
So I'm wondering if there's anyway to tell from within the application itself, with code, if the job is waiting for resources?
To know the status of the application then you need to access the Spark Job History server from where you can get the current status of the job.
You can solve your problem as follows:
Get Application ID of your job through sc.applicationId.
Then use this application Id with Spark History Server REST APIs to get the status of the submitted job.
You can find the Spark History Server Rest APIs at link.
With spark on yarn - I dont see a way to prevent concurrent jobs being scheduled. I have my architecture setup for doing purely batch processing.
I need this for the following reasons:
Resource Constraints
UserCache for spark grows really quickly. Having multiple jobs run causes an explosion of space on cache.
Ideally I'd love to see if there is a config that would ensure only one job to run at any time on Yarn.
You can run create a queue which can host only one application master and run all Spark jobs on that queue. Thus, if a Spark job is running the other will be accepted but they won't be scheduled and running until the running execution has finished...
Finally found the solution - was in yarn documents: yarn.scheduler.capacity.max-applications has to be set to 1 instead of 10000.