OpenMDAO 1.x: recording desvars, constraints and objective - recorder

How can you get information about which variables are design vars, objectives or constraints from the information saved by recorders? It would be useful to print this information to a file to track optimization progress during a run. It looks like the RecordingManager.record_iteration doesn't really allow for this at the moment, since you only pass the root system and a metadata dict meant for optimizer settings.
Would it be possible to add an argument to the RecordingManager.record_iteration called e.g. optproblem, which is a dictionary with dictionaries with desvars, constraints and objective?
A simple OptimizationRecorder could then dump out column formatted files with the quantities for easy plotting during the optimisation.

This is something we have on our list of to-do's for the near future. Our current planned approach is going to be to augment the meta-data (already being saved) of variables with labels identifying them as des-vars, objectives, and constraints. Then you could pull that information out as part of a custom case recorder if you want. We plan on doing it this way because it doesn't require modifying the recorder's api at all. I think we'll have something like this implemented in the next month or so.

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VariesAcrossGroups lost when ReInsert_ing doc.ParameterBindings?

Our plugin maintains some instance parameter values across many elements, including those in groups.
Occasionally the end users will introduce data that activates an unused Category,
so we have to update the document parameter bindings, to include those categories. However, when we call
doc.ParameterBindings.ReInsert()
our existing parameter values inside groups are lost, because our VariesAcrossGroups flag is toggled back to false?
How did Revit intend this to work - are we supposed to use this in a different way, to not trigger this problem?
ReInsert() expects a base Definition argument, and would usualy get an ExternalDefinition supplied.
To learn, I instead tried to scan through the definition-keys of existing bindings and match those.
This way, I got the document's InternalDefinition, and tried calling Reinsert with that instead
(my hope was, that since its existing InternalDefinition DID include VariesAcrossGroups=true, this would help). Alas, Reinsert doesn't seem to care.
The problem, as you might guess, is that after VariesAcrossGroups=False, a lot of my instance parameters have collapsed into each other, so they all hold identical values. Given that they are IDs, this is less than ideal.
My current (intended) solution is to instead grab a backup of all existing parameter values BEFORE I update the bindings, then after the binding-update and variesAcrossGroups back to true, then inspect all values and re-assign all parameter-values that have been broken. But as you may surmise, this is less than ideal - it will be horribly slow for the users to use our plugin, and frankly it seems like something the revitAPI should take care of, not the plugin developer.
Are we using this the wrong way?
One approach I have considered, is to bind every possibly category I can think of, up front and once only. But I'm not sure that is possible. Categories in themselves are also difficult to work with, as you can only create them indirectly, by using your Project-Document as a factory (i.e. you cannot create a category yourself, you can only indirectly ask the Document to - maybe! - create a category for you, that you request). Because of this, I don't think you can bind for all categories up front - some categories only become available in the document, AFTER you have included a given family/type in your project.
To sum it up: First, I
doc.ParameterBindings.ReInsert()
my binding, with the updated categories. Then, I call
InternalDefinition.SetAllowVaryBetweenGroups()
(after having determined IDEF.VariesAcrossGroups has reverted back to false.)
I am interested to hear the best way to do this, without destroying the client's existing data.
Thank you very much in advance.
(I'm not sure I will accept my own answer).
My answer is just, that you can survive-circumvent this problem,
by scanning the entire revit database for your existing parmater values, before you update the document bindings.
Afterwards, you reset VariesAcrossGroups back to its lost value.
Then, you iterate through your collected parameters, and verify which ones have lost their original value, and reset them back to their intended value.
One trick that speeds this up a bit, is that you can check Element.GroupId <> -1. That is, those elements that are group members.
You only need to track elements which are group members, as it's precisely those that are affected by this Revit bug.
A further tip is, that you should not only watch out for parameter-values that have lost their original value. You must also watch out for parameter-values that have accidentally GOTTEN a value, but which should be left un-set.
I just use FilteredElementCollector with WhereElementIsNotElementType().
Performance-wise, it is of course horrible to do all this,
but given how Revit behaves, I see no other solution if you have to ship to your clients.

Optimiser for excel spreadsheet

I'm a mechanical engineer, and I have developed a pretty cool spreadsheet that I use to size some steel members for lifting beams. The set back is that I need to do some trial and error in the selection of the member until I get one that gets as close to the allowable limits as possible.
What I'm hoping to improve on is to develop a function that based upon a length and weight variable that I enter, the program runs a loop and automatically selects the best member size(s) based upon a list of the members and their physical properties. Is this possible?
Yeah, depending on the complexity, either a simple search through parameters (less than, more than etc) might bring you the answer. You can do it quite easily via Pandas library. Just load up the excel as pandas DataFrame (pandas.read_excel()), which then will allow you to perform the searches on that DataFrame object.
If you want to run some optimization algo, you should look into SciPy's optimize to get what you're looking for based on the input data (it handles unconstrained and constrained functions).
Of course, the question you've stated is quite general, so I only pointed the direction. More info would be better.

What is the role of feature type in AzureML?

I want to know what is the difference between feature numeric and numeric columns in Azure Machine Learning Studio.
The documentation site states:
Because all columns are initially treated as features, for modules
that perform mathematical operations, you might need to use this
option to prevent numeric columns from being treated as variables.
But nothing more. Not what a feature is, in which modules you need features. Nothing.
I specifically would like to understand if the clear feature dropdown option in the fields in the edit metadata-module has any effect. Can somebody give me a szenario where this clear feature-operation changes the ML outcome? Thank you
According to the documentation in ought to have an effect:
Use the Fields option if you want to change the way that Azure Machine
Learning uses the data in a model.
But what can this effect be? Any example might help
As you suspect, setting a column as feature does have an effect, and it's actually quite important - when training a model, the algorithms will only take into account columns with the feature flag, effectively ignoring the others.
For example, if you have a dataset with columns Feature1, Feature2, and Label and you want to try out just Feature1, you would apply clear feature to the Feature2 column (while making sure that Feature1 has the feature label set, of course).

Generic graphing and charting solutions

I'm looking for a generic charting solution, ideally not a hosted one that provides the following features:
Charting a tuple of values where the values are:
1) A service identifier (e.g. CPU usage)
2) A client identifier within that service (e.g. server IP)
3) A value
4) A timestamp with millisecond/second resolution.
Optional:
I'd like to also extend the concept of a client identifier further, taking the above example further, I'd like to store statistics for each core separately, so, another identifier would be Core 1/Core 2..
Now, to make sure I'm clearly stating my problem, I don't want a utility that collects these statistics. I'd like something that stores them, but, this is also not mandatory, I can always store them in MySQL, or such.
What I'm looking for is something that takes values such as these, and charts them nicely, in a multitude of ways (timelines, motion, and the usual ones [pie, bar..]). Essentially, a nice visualization package that allows me to make use of all this data. I'd be collecting data from multiple services, multiple applications, and the datapoints will be of varying resolution. Some of the data will include multiple layers of nesting, some none. (For example, CPU would go down to Server IP, CPU#, whereas memory would only be Server IP, but would include a different identifier, i.e free/used/cached as the "secondary' identifier. Something like average request latency might not have a secondary identifier at all, in the case of ping). What I'm trying to get across is that having multiple layers of identifiers would be great. To add one final example of where multiple identifiers would be great: adding an extra identifier on top of ip/cpu#, namely, process name. I think the advantages of that are obvious.
For some applications, we might collect data at a very narrow scope, focusing on every aspect, in other cases, it might be a more general statistic. When stuff goes wrong, both come in useful, the first to quickly say "something just went wrong", and the second to say "why?".
Further, it would be a nice thing if the charting application threw out "bad" values, that is, if for some reason our monitoring program started to throw values of 300% CPU used on a single core for 10 seconds, it'd be nice if the charts themselves didn't reflect it in the long run. Some sort of smoothing, maybe? This could obviously be done at the data-layer though, so its not a requirement at all.
Finally, comparing two points in time, or comparing two different client identifiers of the same service etc without too much effort would be great.
I'm not partial to any specific language, although I'd prefer something in (one of the following) PHP, Python, C/C++, C#, as these are languages I'm familiar with. It doesn't have to be open source, it doesn't have to be a library, I'm open to using whatever fits my purpose the best.
More of a P.S than a requirement: I'd like to have pretty charts that are easy for non-technical people to understand, and act upon too (and like looking at!).
I'm open to clarifying, and, in advance, thanks for your time!
I am pretty sure that protovis meets all your requirements. But it has a bit of a learning curve. You are meant to learn by examples, and there are plenty to work from. It makes some pretty nice graphs by default. Every value can be a function, so you can do things like get rid of your "Bad" values.

Integrating with 500+ applications

Our customers use 500+ applications and we would like to integrate these applications with our. What is the best way to do that? These applications are time registration applications and common for most of them is that they can export to csv or similar, some of them are actually home-brewed excel sheets where time is registered.
The best idea so far is to create our own excel sheet, which can be used to integrate with all these applications. The integrations could be in the form of cells containing something like ='[c:\export.csv]rawdata'!$A$3 Where export.csv is the csv file exported from the time registration applications. Can you see a better way to integrate against all these applications? It should be mentioned that almost all our customers have Microsoft Office.
Edit: Answers to the excellent questions from Pontus Gagge:
How similar are the data in the different applications?
I assume that since they time registration applications, they will have some similarities, but I assume that some will register the how long time one has worked in total for a whole month, while others will spesify for each day. If Excel is chosen, I believe that many of the differences could be ironed out using basic formulas.
What quality is the data?
The quality of the data can vary so basic validation must be undertaken, a good way is also to make it transparent for the customers, how our application understands their input, so they are responsible.
How large amounts of data are you talking about?
There will be information about the time worked for up to 50 employees.
Is the integration one-way only?
Yes
With what frequency should information be transferred?
Once per month (when they need to pay salaries).
How often do the applications themselves change, and how often does your product change?
If their application is a home-brewed Excel sheet, then I assume it will change once a year (due for example a mistake someone). If it is a standard proper time registration application, then I do not believe they are updated more often than every fifth year or so, as it is a very stabile concept.
Should the integration be fully automatic or can your end users trigger a data transfer?
They can surely trigger data transfer. The users are often dedicated to the process so they can be trained at doing it, which means that they could make up to, say 30, mouse clicks in order to integrate each month.
Will the customers have somebody to monitor the integrations?
As we have many customers, many of them should be able to undertake the integration themselves. We will though be able to assist them over the telephone. We cannot, though undertake the integration ourselves because we would then be responsible for any errors due to user mistakes, etc.
Does the phrase 'integration spaghetti' mean anything to you...?
I am looking for ideas from the best chefs to cook a nice large portion of that.
You need to come up with a common data format, and a way to translate the individual data formats to the common format. There's really no way around this - any solution you come up with will have to do this in one way or the other. It's the essential complexity of what you're doing.
The bigger issue is actually variances within the source data, in terms of how things like dates are stored, missing columns, etc. Doing a generic conversion for CSV to move columns around is comparatively easy.
I would also look at CSV and then use an OLEDB connection against the CSV file for importing.
If you try to make something that can interface to any data structure in the universe (and 500 is plenty close enough), it is guaranteed to be a maintenance nightmare. Instead I would approach this from multiple angles:
Devise an interface into which a human can enter this data already in the proper format. With 500+ clients, I'd make this a small, raw but functional browser based site that users can use to enter this information manally. This is the fall-back. At the end of the day, a human can re-key the information into the site and solve the import issue. Ideally, everyone would use this instead of their own format. Data entry people are cheap.
Similar to above, but expanded, I would develop a standard application or standardize on an off-the-shelf application that can be used to replace their existing format. This might take more time than #1. The goal would be to only do one-time imports of these varying data schemas into the application and be done with them for good.
The nice thing about spreadsheets is that you can do anything anywhere. The bad thing about spreadsheets is that you can do anything anywhere. With CSV or a spreadsheet there is simply no way to enforce data integrity and thus consistency (which is the primary goal) on the data. If the source data is already in a database, then that is obviously simpler.
I would be inclined to use database format into which each of these files need to be converted rather than a spreadsheet (e.g. use something like Jet (MDB)). If you have non-Windows users then that will make it harder and you might have to use a spreadsheet. The problem is that it is too easy for the user to change their source structure, break their upload and come crying to you. If a given end user has a resident expert, they can find a way of importing the data into that database format . If you are that expert, then I would on a case-by-case basis, write something that would import into that database format. XML would be the other choice, but that will likely take more coding than an import/export into a database format.
Standardization of the apps (even having all the sources in a database format instead of a spreadsheet would help) and control over the data schema is the ultimate goal rather than permitting a gazillion formats. There really is no nice answer other than standardization. Otherwise, you are having to write a converter for every Tom-Dick-and-Harry format and again when someone changes the source format.
With a multitude of data sources mapping each one correctly to an intermediate format is not trivial. Regular expressions are good with a finite set of known data formats. Multipass can help when data is ambiguous without context (month,day fields and have several days of data), and also help defeat data entry errors. But it seems as this data is connected to salaries there needs a good reliable transfer.
An import configuring trick
Get the customer to make a set of training data in the application. It should have a "predefined unique date" and each subsequent data field have a number corresponding to the target data field in your application. On importing your application needs to recognise the predefined date, determine the unique translation required and effect the displaying/saving of this "mapping key", and stop the import. eg If you expect "Duration hours" in field two then get the user to enter 2 in the relevant field which might be "Attendance hours".
On subsequent runs, and with the mapping definition key, import becomes a fairly easy process of translation.
Note on terms
"predefined date" - must be historical, say founding date of your company?, might need to be in PC clock settable range.
"mapping key" - could be string of hex digits and nybble based so tractable to workout
The entered code can be extended to signify required conversions ie customer's application has durations in days and your application expects it in hours.
Interfacing with windows programs (in order if increasing fragility)
Ye Olde saving as CSV file
Print to operating system printer that is setup as a text file/pdf, then scavenge the data out of that
Extract data via the application interface control, typically ActiveX for several windows programs ie like Matlab's Spreadsheet Link
Read native file format xls format ie like Matlab's xlsread
Add an additional intermediate spreadsheet sheet that has extended cell references ie ='[filename]rawdata'!$A$3
Have a look at Teiid by JBoss: http://jboss.org/teiid
Also consider using SOA - e.g., if you're on Java, try JBoss SOA platform: http://www.jboss.com/resources/soa/?intcmp=1004
Use a simple XML format. A non-technical person can easily understand a simple XML format (and could even identify basic problems with XML documents that are not well-formed).
Maybe use a DTD (or even better an XML schema) to do very basic validation, and then supplement this with an XSL stylesheet to do more validation with better error reporting. (An XSL stylesheet simply converts from XML to something else and so can be generate readable error messages.)
The advantage of this approach is that web browsers such as Internet Explorer can apply the XSL stylesheets. A customer need only spend at most a day enhancing their applications or writing excel macros to generate the XML data in the format that you specify.
Recent versions of Excel have support for converting spreadsheet data to XML, and can even validate against schemas.
Once the data passes the XSL validation checks, you have validated XML data.
If you have heaps of data and heaps of money, you could look at existing data management and cleansing tools:
http://www-01.ibm.com/software/data/infosphere/datastage
http://www-01.ibm.com/software/data/infosphere/qualitystage
But even then, you'll likely need to follow kyoryu's suggestion assuming you have 500+ data formats. The problem isn't your side. You need them to standardize their output formats if you have no control over their apps. CSV is likely the easiest. You could even send them a excel template to help them along.

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