I am trying to learn the basics of Dynamic Programming (DP), and went through some the online resources i could get, such as...
What is dynamic programming?
Good examples, articles, books for understanding dynamic programming
Tutorial for Dynamic Programming
Dynamic Programming – From Novice to Advanced -- (I can't understand it properly (i.e. how to approach a problem using DP))
and till now i get to understand that
A dynamic problem is almost same that of
recursion with just a difference (which gives it the power it is know
for)
i.e. storing the value or solution we got and using it again to find next solution
For Example:
According to an explanation from codechef
Problem : Minimum Steps to One
Problem Statement: On a positive integer, you can perform any one of the following 3 steps.
Subtract 1 from it. ( n = n - 1 )
If its divisible by 2, divide by 2. ( if n % 2 == 0 , then n = n / 2 )
If its divisible by 3, divide by 3. ( if n % 3 == 0 , then n = n / 3 )
Now the question is, given a positive integer n, find the minimum number of steps that takes n to 1
eg:
For n = 1 , output: 0
For n = 4 , output: 2 ( 4 /2 = 2 /2 = 1 )
For n = 7 , output: 3 ( 7 -1 = 6 /3 = 2 /2 = 1 )
int memo[n+1]; // we will initialize the elements to -1 ( -1 means, not solved it yet )
Top-Down Approach for the above problem
int getMinSteps ( int n ) {
if ( n == 1 ) return 0;
if( memo[n] != -1 ) return memo[n];
int r = 1 + getMinSteps( n - 1 );
if( n%2 == 0 ) r = min( r , 1 + getMinSteps( n / 2 ) );
if( n%3 == 0 ) r = min( r , 1 + getMinSteps( n / 3 ) );
memo[n] = r ; // save the result. If you forget this step, then its same as plain recursion.
return r;
}
Am i correct in understanding the dp, or can anyone explain it in a better and easy way, so that i can learn it and can approach a problem with Dynamic programming.
The Fibonacci sequence example from wikipedia gives a good example.
Dynamic programming is an optimization technique that transforms a potentially exponential recursive solution into a polynomial time solution assuming the problem satisfies the principle of optimality. Basically meaning you can build an optimal solution from optimal sub-problems.
Another important characteristic of problems that are tractable with dynamic programming is that they are overlapping. If those problems are broken down into sub-problems that are repetitive, the same solution can be reused for solving those sub problems.
A problem with optimal substructure property and overlapping subproblems, dynamic programming is a potentially efficient way to solve it.
In the example you can see that recursive version of the Fibonacci numbers would grow in a tree like structure, suggesting an exponential explosion.
function fib(n)
if n <=1 return n
return fib(n − 1) + fib(n − 2)
So for fib(5) you get:
fib(5)
fib(4) + fib(3)
(fib(3) + fib(2)) + (fib(2) + fib(1))
And so on in a tree like fashion.
Dynamic programming lets us build the solution incrementally using optimal sub-problems in polynomial time. This is usually done with some form of record keeping such as a table.
Note that there are repeating instances of sub problems, i.e. calculating fib(2) one time is enough.
Also from Wikipedia, a dynamic programming solution
function fib(n)
if n = 0
return 0
else
var previousFib := 0, currentFib := 1
repeat n − 1 times // loop is skipped if n = 1
var newFib := previousFib + currentFib
previousFib := currentFib
currentFib := newFib
return currentFib
Here the solution is built up from previousFib and currentFib which are set initially. The newFib is calculated from the previous steps in this loop. previousFib and currentFib represent our record keeping for previous sub-problems.
The result is a polynomial time solution (O(n) in this case) for a problem whose recursive formulation would have been exponential (O(2^n) in this case).
There is wonderful answer How should I explain dynamic programming to a 4-year-old?
Just quoting same here :
Writes down "1+1+1+1+1+1+1+1 =" on a sheet of paper
"What's that equal to?"
counting "Eight!"
writes down another "1+" on the left
"What about that?"
quickly "Nine!"
"How'd you know it was nine so fast?"
"You just added one more"
"So you didn't need to recount because you remembered there were
eight! Dynamic Programming is just a fancy way to say 'remembering
stuff to save time later'"
Related
I'm trying to find the number of palindromes in a certain range using the Python code below:
def test(n,m):
return len([i for i in range(n,m+1) if str(i) == str(i)[::-1]])
Can anyone discover any other ways to make this code simpler in order to reduce its time complexity, as well as any potential missing conditions that my function may not have addressed?
Some recommendations to enhance the temporal complexity and mark on conditions that I haven't handled.
So here's an idea to build off of: For an n-digit number, there will be O(2^n) numbers less than n. For now, forget the lower bound. Checking each in turn will therefor take at least that long.
However, every palindrome is the repeat of a number of half that length - there can only be 2^(n/2) palindromes of length n. This is a much smaller number. Consider searching that way instead?
So for a number of the form abcd, there are two palindromes based off of it - abcddcba and abcdcba. You can therefor find all panidromes up to length 8 by instead starting from all numbers up to length 4 and finding their generated palindromes.
you can eliminate for loop and you can use recursion for eliminating time complexity
below is the code which has O(log10n) time complexity
def getFirstDigit(x) :
while (x >= 10) :
x //= 10
return x
def getCountWithSameStartAndEndFrom1(x) :
if (x < 10):
return x
tens = x // 10
res = tens + 9
firstDigit = getFirstDigit(x)
lastDigit = x % 10
if (lastDigit < firstDigit) :
res = res - 1
return res
def getCountWithSameStartAndEnd(start, end) :
return (getCountWithSameStartAndEndFrom1(end) -
getCountWithSameStartAndEndFrom1(start - 1))
Problem: Choose an element from the array to maximize the sum after XOR all elements in the array.
Input for problem statement:
N=3
A=[15,11,8]
Output:
11
Approach:
(15^15)+(15^11)+(15^8)=11
My Code for brute force approach:
def compute(N,A):
ans=0
for i in A:
xor_sum=0
for j in A:
xor_sum+=(i^j)
if xor_sum>ans:
ans=xor_sum
return ans
Above approach giving the correct answer but wanted to optimize the approach to solve it in O(n) time complexity. Please help me to get this.
If you have integers with a fixed (constant) number of c bites then it should be possible because O(c) = O(1). For simplicity reasons I assume unsigned integers and n to be odd. If n is even then we sometimes have to check both paths in the tree (see solution below). You can adapt the algorithm to cover even n and negative numbers.
find max in array with length n O(n)
if max == 0 return 0 (just 0s in array)
find the position p of the most significant bit of max O(c) = O(1)
p = -1
while (max != 0)
p++
max /= 2
so 1 << p gives a mask for the highest set bit
build a tree where the leaves are the numbers and every level stands for a position of a bit, if there is an edge to the left from the root then there is a number that has bit p set and if there is an edge to the right there is a number that has bit p not set, for the next level we have an edge to the left if there is a number with bit p - 1 set and an edge to the right if bit p - 1 is not set and so on, this can be done in O(cn) = O(n)
go through the array and count how many times a bit at position i (i from 0 to p) is set => sum array O(cn) = O(n)
assign the root of the tree to node x
now for each i from p to 0 do the following:
if x has only one edge => x becomes its only child node
else if sum[i] > n / 2 => x becomes its right child node
else x becomes its left child node
in this step we choose the best path through the tree that gives us the most ones when xoring O(cn) = O(n)
xor all the elements in the array with the value of x and sum them up to get the result, actually you could have built the result already in the step before by adding sum[i] * (1 << i) to the result if going left and (n - sum[i]) * (1 << i) if going right O(n)
All the sequential steps are O(n) and therefore overall the algorithm is also O(n).
The goal of this assignment is to take the recurrence relation given at the bottom, and then create a recursive function under recFunc(n), as well as a closed function definition underneath nonRecFunc(n). A closed function means our function should solely depend on n, and that its output should
match the recursive function's exactly. Then, find the value for n = 15 and n = 20, and use it as instructed below. You should probably need to use a characteristic equation to solve this problem.
What is the value for nonRecFunc(20) (divided by) nonRecFunc(15), rounded to the nearest integer.
Problem:
Solve the recurrence relation a_n = 12a_n-1 - 32a_n-2 with initial conditions a_0 = 1 and a_1 = 4.
I am confused as to how I should attack this problem and how I can use recursion to solve the issue.
def recFunc(n):
if n == 0:
return 1
elif n == 1:
return 2
else:
return recFunc(n - 1) + 6 * recFunc(n - 2)
def nonRecFunc(n):
return 4/5 * 3 ** n + 1/5 * (-2) ** n
for i in range(0,10):
print(recFunc(i))
print(nonRecFunc(i))
print()
As mentioned in a my comment above, I leave the recursive solution to you.
For the more mathematical question of the non-recursive solution consider this:
you have
x_n = a x_(n-1) + b x_(n-2)
This means that the change of x is more or less proportional to x as x_n and x_(n-1) will be of same order of magnitude. In other words we are looking for a function type giving
df(n)/dn ~ f(n)
This is something exponential. So the above assumption is
x_n = alpha t^n + beta s^n
(later when solving for s and t the motivation for this becomes clear) from the start values we get
alpha + beta = 1
and
alpha t + beta s = 2
The recursion provides
alpha t^n + beta s^n = a ( alpa t^(n-1) + beta s^(n-1) ) + b ( alpa t^(n-2) + beta s^(n-2) )
or
t^2 alpha t^(n-2) + s^2 beta s^(n-2) = a ( t alpa t^(n-2) + s beta s^(n-2) ) + b ( alpa t^(n-2) + beta s^(n-2) )
This equation holds for all n such that you can derive an equation for t and s.
Plugging in the results in the above equations gives you the non-recursive solution.
Try to reproduce it and then go for the actual task.
Cheers.
I'm trying to solve this problem:
Suppose I have a set of n coins {a_1, a2, ..., a_n}. A coin with value
1 will always appear. What is the minimum number of coins I
need to reach M?
The constraints are:
1 ≤ n ≤ 25
1 ≤ m ≤ 10^6
1 ≤ a_i ≤ 100
Ok, I know that it's the Change-making problem.
I have tried to solve this problem using Breadth-First Search, Dynamic Programming and Greedly (which is incorrect, since it don't always give best solution). However, I get Time Limit Exceeded (3 seconds).
So I wonder if there's an optimization for this problem.
The description and the constraints called my attention, but I don't know how to use it in my favour:
A coin with value 1 will always appear.
1 ≤ a_i ≤ 100
I saw at wikipedia that this problem can also be solved by "Dynamic programming with the probabilistic convolution tree". But I could not understand anything.
Can you help me?
This problem can be found here: http://goo.gl/nzQJem
Let a_n be the largest coin. Use these two clues:
result is >= ceil(M/a_n),
result configuration has lot of a_n's.
It is best to try with maximum of a_n's and than check if it is better result with less a_n's till it is possible to find better result.
Something like: let R({a_1, ..., a_n}, M) be function that returns result for a given problem. Than R can be implemented:
num_a_n = floor(M/a_n)
best_r = num_a_n + R({a_1, ..., a_(n-1)}, M-a_n*num_a_n)
while num_a_n > 0:
num_a_n = num_a_n - 1
# Check is it possible at all to get better result
if num_a_n + ceil(M-a_n*num_a_n / a_(n-1) ) >= best_r:
return best_r
next_r = num_a_n + R({a_1, ..., a_(n-1)}, M-a_n*num_a_n)
if next_r < best_r:
best_r = next_r
return best_r
Local alignment between X and Y, with at least one column aligning a C
to a W.
Given two sequences X of length n and Y of length m, we
are looking for a highest-scoring local alignment (i.e., an alignment
between a substring X' of X and a substring Y' of Y) that has at least
one column in which a C from X' is aligned to a W from Y' (if such an
alignment exists). As scoring model, we use a substitution matrix s
and linear gap penalties with parameter d.
Write a code in order to solve the problem efficiently. If you use dynamic
programming, it suffices to give the equations for computing the
entries in the dynamic programming matrices, and to specify where
traceback starts and ends.
My Solution:
I've taken 2 sequences namely, "HCEA" and "HWEA" and tried to solve the question.
Here is my code. Have I fulfilled what is asked in the question? If am wrong kindly tell me where I've gone wrong so that I will modify my code.
Also is there any other way to solve the question? If its available can anyone post a pseudo code or algorithm, so that I'll be able to code for it.
public class Q1 {
public static void main(String[] args) {
// Input Protein Sequences
String seq1 = "HCEA";
String seq2 = "HWEA";
// Array to store the score
int[][] T = new int[seq1.length() + 1][seq2.length() + 1];
// initialize seq1
for (int i = 0; i <= seq1.length(); i++) {
T[i][0] = i;
}
// Initialize seq2
for (int i = 0; i <= seq2.length(); i++) {
T[0][i] = i;
}
// Compute the matrix score
for (int i = 1; i <= seq1.length(); i++) {
for (int j = 1; j <= seq2.length(); j++) {
if ((seq1.charAt(i - 1) == seq2.charAt(j - 1))
|| (seq1.charAt(i - 1) == 'C') && (seq2.charAt(j - 1) == 'W')) {
T[i][j] = T[i - 1][j - 1];
} else {
T[i][j] = Math.min(T[i - 1][j], T[i][j - 1]) + 1;
}
}
}
// Strings to store the aligned sequences
StringBuilder alignedSeq1 = new StringBuilder();
StringBuilder alignedSeq2 = new StringBuilder();
// Build for sequences 1 & 2 from the matrix score
for (int i = seq1.length(), j = seq2.length(); i > 0 || j > 0;) {
if (i > 0 && T[i][j] == T[i - 1][j] + 1) {
alignedSeq1.append(seq1.charAt(--i));
alignedSeq2.append("-");
} else if (j > 0 && T[i][j] == T[i][j - 1] + 1) {
alignedSeq2.append(seq2.charAt(--j));
alignedSeq1.append("-");
} else if (i > 0 && j > 0 && T[i][j] == T[i - 1][j - 1]) {
alignedSeq1.append(seq1.charAt(--i));
alignedSeq2.append(seq2.charAt(--j));
}
}
// Display the aligned sequence
System.out.println(alignedSeq1.reverse().toString());
System.out.println(alignedSeq2.reverse().toString());
}
}
#Shole
The following are the two question and answers provided in my solved worksheet.
Aligning a suffix of X to a prefix of Y
Given two sequences X and Y, we are looking for a highest-scoring alignment between any suffix of X and any prefix of Y. As a scoring model, we use a substitution matrix s and linear gap penalties with parameter d.
Give an efficient algorithm to solve this problem optimally in time O(nm), where n is the length of X and m is the length of Y. If you use a dynamic programming approach, it suffices to give the equations that are needed to compute the dynamic programming matrix, to explain what information is stored for the traceback, and to state where the traceback starts and ends.
Solution:
Let X_i be the prefix of X of length i, and let Y_j denote the prefix of Y of length j. We compute a matrix F such that F[i][j] is the best score of an alignment of any suffix of X_i and the string Y_j. We also compute a traceback matrix P. The computation of F and P can be done in O(nm) time using the following equations:
F[0][0]=0
for i = 1..n: F[i][0]=0
for j = 1..m: F[0][j]=-j*d, P[0][j]=L
for i = 1..n, j = 1..m:
F[i][j] = max{ F[i-1][j-1]+s(X[i-1],Y[j-1]), F[i-1][j]-d, F[i][j-1]-d }
P[i][j] = D, T or L according to which of the three expressions above is the maximum
Once we have computed F and P, we find the largest value in the bottom row of the matrix F. Let F[n][j0] be that largest value. We start traceback at F[n][j0] and continue traceback until we hit the first column of the matrix. The alignment constructed in this way is the solution.
Aligning Y to a substring of X, without gaps in Y
Given a string X of length n and a string Y of length m, we want to compute a highest-scoring alignment of Y to any substring of X, with the extra constraint that we are not allowed to insert any gaps into Y. In other words, the output is an alignment of a substring X' of X with the string Y, such that the score of the alignment is the largest possible (among all choices of X') and such that the alignment does not introduce any gaps into Y (but may introduce gaps into X'). As a scoring model, we use again a substitution matrix s and linear gap penalties with parameter d.
Give an efficient dynamic programming algorithm that solves this problem optimally in polynomial time. It suffices to give the equations that are needed to compute the dynamic programming matrix, to explain what information is stored for the traceback, and to state where the traceback starts and ends. What is the running-time of your algorithm?
Solution:
Let X_i be the prefix of X of length i, and let Y_j denote the prefix of Y of length j. We compute a matrix F such that F[i][j] is the best score of an alignment of any suffix of X_i and the string Y_j, such that the alignment does not insert gaps in Y. We also compute a traceback matrix P. The computation of F and P can be done in O(nm) time using the following equations:
F[0][0]=0
for i = 1..n: F[i][0]=0
for j = 1..m: F[0][j]=-j*d, P[0][j]=L
for i = 1..n, j = 1..m:
F[i][j] = max{ F[i-1][j-1]+s(X[i-1],Y[j-1]), F[i][j-1]-d }
P[i][j] = D or L according to which of the two expressions above is the maximum
Once we have computed F and P, we find the largest value in the rightmost column of the matrix F. Let F[i0][m] be that largest value. We start traceback at F[i0][m] and continue traceback until we hit the first column of the matrix. The alignment constructed in this way is the solution.
Hope you get some idea about wot i really need.
I think it's quite easy to find resources or even the answer by google...as the first result of the searching is already a thorough DP solution.
However, I appreciate that you would like to think over the solution by yourself and are requesting some hints.
Before I give out some of the hints, I would like to say something about designing a DP solution
(I assume you know this can be solved by a DP solution)
A dp solution basically consisting of four parts:
1. DP state, you have to self define the physical meaning of one state, eg:
a[i] := the money the i-th person have;
a[i][j] := the number of TV programmes between time i and time j; etc
2. Transition equations
3. Initial state / base case
4. how to query the answer, eg: is the answer a[n]? or is the answer max(a[i])?
Just some 2 cents on a DP solution, let's go back to the question :)
Here's are some hints I am able to think of:
What is the dp state? How many dimensions are enough to define such a state?
Thinking of you are solving problems much alike to common substring problem (on 2 strings),
1-dimension seems too little and 3-dimensions seems too many right?
As mentioned in point 1, this problem is very similar to common substring problem, maybe you should have a look on these problems to get yourself some idea?
LCS, LIS, Edit Distance, etc.
Supplement part: not directly related to the OP
DP is easy to learn, but hard to master. I know a very little about it, really cannot share much. I think "Introduction to algorithm" is a quite standard book to start with, you can find many resources, especially some ppt/ pdf tutorials of some colleges / universities to learn some basic examples of DP.(Learn these examples is useful and I'll explain below)
A problem can be solved by many different DP solutions, some of them are much better (less time / space complexity) due to a well-defined DP state.
So how to design a better DP state or even get the sense that one problem can be solved by DP? I would say it's a matter of experiences and knowledge. There are a set of "well-known" DP problems which I would say many other DP problems can be solved by modifying a bit of them. Here is a post I just got accepted about another DP problem, as stated in that post, that problem is very similar to a "well-known" problem named "matrix chain multiplication". So, you cannot do much about the "experience" part as it has no express way, yet you can work on the "knowledge" part by studying these standard DP problems first maybe?
Lastly, let's go back to your original question to illustrate my point of view:
As I knew LCS problem before, I have a sense that for similar problem, I may be able to solve it by designing similar DP state and transition equation? The state s(i,j):= The optimal cost for A(1..i) and B(1..j), given two strings A & B
What is "optimal" depends on the question, and how to achieve this "optimal" value in each state is done by the transition equation.
With this state defined, it's easy to see the final answer I would like to query is simply s(len(A), len(B)).
Base case? s(0,0) = 0 ! We can't really do much on two empty string right?
So with the knowledge I got, I have a rough thought on the 4 main components of designing a DP solution. I know it's a bit long but I hope it helps, cheers.