I have the latest Amazon Linux AMI running on a medium instance with 4gb of Ram.
LAMP server is setup with a single Wordpress instance. I am having memory issues that I can't seem to pinpoint my issue. I am new to linux, and am unsure of how to pinpoint our issue.
Apache will report:
Sat Apr 18 04:27:36 2015 error (12)Cannot allocate memory: fork: Unable to fork new process
MYSQL will report:
150418 4:28:24 InnoDB: The InnoDB memory heap is disabled
150418 4:28:24 InnoDB: Mutexes and rw_locks use GCC atomic builtins
Version: '5.5.42' socket: '/var/lib/mysql/mysql.sock' port: 3306 MySQL Community Server (GPL)
150418 04:28:24 mysqld_safe Number of processes running now: 0
150418 04:28:24 mysqld_safe mysqld restarted
150418 4:28:24 Note Plugin 'FEDERATED' is disabled.
150418 4:28:24 InnoDB: The InnoDB memory heap is disabled
150418 4:28:24 InnoDB: Mutexes and rw_locks use GCC atomic builtins
150418 4:28:24 InnoDB: Compressed tables use zlib 1.2.7
150418 4:28:24 InnoDB: Using Linux native AIO
150418 4:28:24 InnoDB: Initializing buffer pool, size = 64.0M
InnoDB: mmap(68681728 bytes) failed; errno 12
150418 4:28:24 InnoDB: Completed initialization of buffer pool
150418 4:28:24 InnoDB: Fatal error: cannot allocate memory for the buffer pool
150418 4:28:24 ERROR Plugin 'InnoDB' init function returned error.
150418 4:28:24 ERROR Plugin 'InnoDB' registration as a STORAGE ENGINE failed.
150418 4:28:24 ERROR Unknown/unsupported storage engine: InnoDB
150418 4:28:24 ERROR Aborting
150418 4:28:24 Note /usr/libexec/mysqld: Shutdown complete
150418 04:28:24 mysqld_safe mysqld from pid file /var/run/mysqld/mysqld.pid ended
MYSQL Conf:
mysqld
datadir=/var/lib/mysql
socket=/var/lib/mysql/mysql.sock
Disabling symbolic-links is recommended to prevent assorted security risks
symbolic-links=0
Settings user and group are ignored when systemd is used.
If you need to run mysqld under a different user or group,
customize your systemd unit file for mysqld according to the
instructions in http://fedoraproject.org/wiki/Systemd
query_cache_size=8M
tmp_table_size=16M
max_heap_table_size=16M
thread_cache_size=4
innodb_buffer_pool_size=64M
mysqld_safe
log-error=/var/log/mysqld.log
pid-file=/var/run/mysqld/mysqld.pid
HTTPD Conf: (Prefork)
prefork MPM
StartServers: number of server processes to start
MinSpareServers: minimum number of server processes which are kept spare
MaxSpareServers: maximum number of server processes which are kept spare
ServerLimit: maximum value for MaxClients for the lifetime of the server
MaxClients: maximum number of server processes allowed to start
MaxRequestsPerChild: maximum number of requests a server process serves
<IfModule prefork.c>
StartServers 8
MinSpareServers 5
MaxSpareServers 15
ServerLimit 256
MaxClients 256
MaxRequestsPerChild 3000
</IfModule>
Related
I am trying to install mysql non-interactively (without being asked any configuration questions) with the Dockerfile, and I found the solution to how to do that in : how to use here-strings in the Dockerfile?
but now I am facing another problem when I am trying to start mysql using service mysql start inside the container It won't work and I wonder why? because it was working perfectly when I was doing the installation manually inside the container of debian:buster image.
As you can see in the following it won't start :
root#839a7dc4869a:/# service --status-all
[ ? ] hwclock.sh
[ - ] mysql
root#839a7dc4869a:/# service mysql start
....................................................................................
....................................................................................
[info] MySQL Community Server 5.7.28 did not start. Please check logs for more details..
and this is my Dockerfile:
From debian:buster
RUN apt update
RUN apt install -y gnupg wget lsb-release
RUN wget https://dev.mysql.com/get/mysql-apt-config_0.8.13-1_all.deb
RUN printf "1\n1\n4\n" | dpkg -i mysql-apt-config_0.8.13-1_all.deb
RUN apt update
RUN printf '%s\n' 'mysql-community-server mysql-community-server/root-pass password your_password' | debconf-set-selections && \
printf '%s\n' 'mysql-community-server mysql-community-server/re-root-pass password your_password' | debconf-set-selections && \
apt-get -y install mysql-server
CMD bash
this is the logfile using less /var/log/mysql/error.log
2020-01-07T21:47:54.400816Z 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see documentation for more details).
2020-01-07T21:47:55.708390Z 0 [Warning] InnoDB: New log files created, LSN=45790
2020-01-07T21:47:55.886509Z 0 [Warning] InnoDB: Creating foreign key constraint system tables.
2020-01-07T21:47:56.038387Z 0 [Warning] No existing UUID has been found, so we assume that this is the first time that this server has been started. Generating a new UUID: 5d1f693e-3197-11ea-95e2-0242ac110002.
2020-01-07T21:47:56.040635Z 0 [Warning] Gtid table is not ready to be used. Table 'mysql.gtid_executed' cannot be opened.
2020-01-07T21:47:56.456659Z 0 [Warning] CA certificate ca.pem is self signed.
2020-01-07T21:47:56.740853Z 1 [Warning] root#localhost is created with an empty password ! Please consider switching off the --initialize-insecure option.
2020-01-07T21:47:59.268086Z 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see documentation for more details).
2020-01-07T21:47:59.269832Z 0 [Note] mysqld (mysqld 5.7.28) starting as process 334 ...
2020-01-07T21:47:59.274112Z 0 [Note] InnoDB: PUNCH HOLE support available
2020-01-07T21:47:59.274187Z 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2020-01-07T21:47:59.274191Z 0 [Note] InnoDB: Uses event mutexes
2020-01-07T21:47:59.274194Z 0 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2020-01-07T21:47:59.274196Z 0 [Note] InnoDB: Compressed tables use zlib 1.2.11
2020-01-07T21:47:59.274199Z 0 [Note] InnoDB: Using Linux native AIO
2020-01-07T21:47:59.274482Z 0 [Note] InnoDB: Number of pools: 1
2020-01-07T21:47:59.274639Z 0 [Note] InnoDB: Using CPU crc32 instructions
2020-01-07T21:47:59.276370Z 0 [Note] InnoDB: Initializing buffer pool, total size = 128M, instances = 1, chunk size = 128M
2020-01-07T21:47:59.281119Z 0 [Note] InnoDB: Completed initialization of buffer pool
2020-01-07T21:47:59.282302Z 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority().
2020-01-07T21:47:59.294898Z 0 [Note] InnoDB: Highest supported file format is Barracuda.
2020-01-07T21:47:59.301611Z 0 [Note] InnoDB: Creating shared tablespace for temporary tables
2020-01-07T21:47:59.301665Z 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...
2020-01-07T21:47:59.344888Z 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB.
2020-01-07T21:47:59.345338Z 0 [Note] InnoDB: 96 redo rollback segment(s) found. 96 redo rollback segment(s) are active.
2020-01-07T21:47:59.345345Z 0 [Note] InnoDB: 32 non-redo rollback segment(s) are active.
2020-01-07T21:47:59.346096Z 0 [Note] InnoDB: Waiting for purge to start
2020-01-07T21:47:59.396626Z 0 [Note] InnoDB: 5.7.28 started; log sequence number 2628227
2020-01-07T21:47:59.396804Z 0 [Note] InnoDB: Loading buffer pool(s) from /var/lib/mysql/ib_buffer_pool
2020-01-07T21:47:59.396852Z 0 [Note] Plugin 'FEDERATED' is disabled.
2020-01-07T21:47:59.397717Z 0 [Note] InnoDB: Buffer pool(s) load completed at 200107 21:47:59
2020-01-07T21:47:59.400400Z 0 [Note] Found ca.pem, server-cert.pem and server-key.pem in data directory. Trying to enable SSL support using them.
2020-01-07T21:47:59.400413Z 0 [Note] Skipping generation of SSL certificates as certificate files are present in data directory.
2020-01-07T21:47:59.400770Z 0 [Warning] CA certificate ca.pem is self signed.
2020-01-07T21:47:59.400790Z 0 [Note] Skipping generation of RSA key pair as key files are present in data directory.
2020-01-07T21:47:59.400992Z 0 [Note] Server hostname (bind-address): '127.0.0.1'; port: 3306
2020-01-07T21:47:59.401006Z 0 [Note] - '127.0.0.1' resolves to '127.0.0.1';
2020-01-07T21:47:59.401021Z 0 [Note] Server socket created on IP: '127.0.0.1'.
2020-01-07T21:47:59.403395Z 0 [Warning] Insecure configuration for --pid-file: Location '/tmp' in the path is accessible to all OS users. Consider choosing a different directory.
2020-01-07T21:47:59.408666Z 0 [Note] Event Scheduler: Loaded 0 events
2020-01-07T21:47:59.408808Z 0 [Note] Execution of init_file '/var/lib/mysql-files/7pxJ7t37bI' started.
2020-01-07T21:47:59.409234Z 0 [Note] Execution of init_file '/var/lib/mysql-files/7pxJ7t37bI' ended.
2020-01-07T21:47:59.409284Z 0 [Note] mysqld: ready for connections.
Version: '5.7.28' socket: '/tmp/tmp.q7db4MMdAE/mysqld.sock' port: 3306 MySQL Community Server (GPL)
2020-01-07T21:47:59.409594Z 0 [Note] Giving 0 client threads a chance to die gracefully
2020-01-07T21:47:59.409606Z 0 [Note] Shutting down slave threads
2020-01-07T21:47:59.409609Z 0 [Note] Forcefully disconnecting 0 remaining clients
2020-01-07T21:47:59.409612Z 0 [Note] Event Scheduler: Purging the queue. 0 events
2020-01-07T21:47:59.409663Z 0 [Note] Binlog end
2020-01-07T21:47:59.409938Z 0 [Note] Shutting down plugin 'ngram'
2020-01-07T21:47:59.409944Z 0 [Note] Shutting down plugin 'partition'
2020-01-07T21:47:59.409946Z 0 [Note] Shutting down plugin 'BLACKHOLE'
2020-01-07T21:47:59.409948Z 0 [Note] Shutting down plugin 'ARCHIVE'
2020-01-07T21:47:59.409950Z 0 [Note] Shutting down plugin 'PERFORMANCE_SCHEMA'
2020-01-07T21:47:59.409962Z 0 [Note] Shutting down plugin 'MRG_MYISAM'
2020-01-07T21:47:59.409964Z 0 [Note] Shutting down plugin 'MyISAM'
2020-01-07T21:47:59.409969Z 0 [Note] Shutting down plugin 'INNODB_SYS_VIRTUAL'
2020-01-07T21:47:59.409971Z 0 [Note] Shutting down plugin 'INNODB_SYS_DATAFILES'
2020-01-07T21:47:59.409973Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLESPACES'
2020-01-07T21:47:59.409975Z 0 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN_COLS'
2020-01-07T21:47:59.409976Z 0 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN'
2020-01-07T21:47:59.409978Z 0 [Note] Shutting down plugin 'INNODB_SYS_FIELDS'
2020-01-07T21:47:59.409980Z 0 [Note] Shutting down plugin 'INNODB_SYS_COLUMNS'
2020-01-07T21:47:59.409981Z 0 [Note] Shutting down plugin 'INNODB_SYS_INDEXES'
2020-01-07T21:47:59.409983Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLESTATS'
2020-01-07T21:47:59.409985Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLES'
2020-01-07T21:47:59.409986Z 0 [Note] Shutting down plugin 'INNODB_FT_INDEX_TABLE'
2020-01-07T21:47:59.409988Z 0 [Note] Shutting down plugin 'INNODB_FT_INDEX_CACHE'
2020-01-07T21:47:59.409990Z 0 [Note] Shutting down plugin 'INNODB_FT_CONFIG'
2020-01-07T21:47:59.409991Z 0 [Note] Shutting down plugin 'INNODB_FT_BEING_DELETED'
2020-01-07T21:47:59.409993Z 0 [Note] Shutting down plugin 'INNODB_FT_DELETED'
2020-01-07T21:47:59.409995Z 0 [Note] Shutting down plugin 'INNODB_FT_DEFAULT_STOPWORD'
2020-01-07T21:47:59.409996Z 0 [Note] Shutting down plugin 'INNODB_METRICS'
2020-01-07T21:47:59.409998Z 0 [Note] Shutting down plugin 'INNODB_TEMP_TABLE_INFO'
2020-01-07T21:47:59.409999Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_POOL_STATS'
2020-01-07T21:47:59.410001Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE_LRU'
2020-01-07T21:47:59.410003Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE'
2020-01-07T21:47:59.410004Z 0 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX_RESET'
2020-01-07T21:47:59.410006Z 0 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX'
2020-01-07T21:47:59.410008Z 0 [Note] Shutting down plugin 'INNODB_CMPMEM_RESET'
2020-01-07T21:47:59.410009Z 0 [Note] Shutting down plugin 'INNODB_CMPMEM'
2020-01-07T21:47:59.410011Z 0 [Note] Shutting down plugin 'INNODB_CMP_RESET'
2020-01-07T21:47:59.410012Z 0 [Note] Shutting down plugin 'INNODB_CMP'
2020-01-07T21:47:59.410014Z 0 [Note] Shutting down plugin 'INNODB_LOCK_WAITS'
2020-01-07T21:47:59.410016Z 0 [Note] Shutting down plugin 'INNODB_LOCKS'
2020-01-07T21:47:59.410017Z 0 [Note] Shutting down plugin 'INNODB_TRX'
2020-01-07T21:47:59.410019Z 0 [Note] Shutting down plugin 'InnoDB'
2020-01-07T21:47:59.410083Z 0 [Note] InnoDB: FTS optimize thread exiting.
2020-01-07T21:47:59.410230Z 0 [Note] InnoDB: Starting shutdown...
2020-01-07T21:47:59.511556Z 0 [Note] InnoDB: Dumping buffer pool(s) to /var/lib/mysql/ib_buffer_pool
2020-01-07T21:47:59.511701Z 0 [Note] InnoDB: Buffer pool(s) dump completed at 200107 21:47:59
2020-01-07T21:48:00.958542Z 0 [Note] InnoDB: Shutdown completed; log sequence number 2628246
2020-01-07T21:48:00.960660Z 0 [Note] InnoDB: Removed temporary tablespace data file: "ibtmp1"
2020-01-07T21:48:00.960692Z 0 [Note] Shutting down plugin 'MEMORY'
2020-01-07T21:48:00.960697Z 0 [Note] Shutting down plugin 'CSV'
2020-01-07T21:48:00.960701Z 0 [Note] Shutting down plugin 'sha256_password'
2020-01-07T21:48:00.960703Z 0 [Note] Shutting down plugin 'mysql_native_password'
2020-01-07T21:48:00.960789Z 0 [Note] Shutting down plugin 'binlog'
2020-01-07T21:48:00.962661Z 0 [Note] mysqld: Shutdown complete
and this is the logfile after i run service mysql start :
2020-01-07T21:47:54.400816Z 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see documentation for more details).
2020-01-07T21:47:55.708390Z 0 [Warning] InnoDB: New log files created, LSN=45790
2020-01-07T21:47:55.886509Z 0 [Warning] InnoDB: Creating foreign key constraint system tables.
2020-01-07T21:47:56.038387Z 0 [Warning] No existing UUID has been found, so we assume that this is the first time that this server has been started. Generating a new UUID: 5d1f693e-3197-11ea-95e2-0242ac110002.
2020-01-07T21:47:56.040635Z 0 [Warning] Gtid table is not ready to be used. Table 'mysql.gtid_executed' cannot be opened.
2020-01-07T21:47:56.456659Z 0 [Warning] CA certificate ca.pem is self signed.
2020-01-07T21:47:56.740853Z 1 [Warning] root#localhost is created with an empty password ! Please consider switching off the --initialize-insecure option.
2020-01-07T21:47:59.268086Z 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see documentation for more details).
2020-01-07T21:47:59.269832Z 0 [Note] mysqld (mysqld 5.7.28) starting as process 334 ...
2020-01-07T21:47:59.274112Z 0 [Note] InnoDB: PUNCH HOLE support available
2020-01-07T21:47:59.274187Z 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2020-01-07T21:47:59.274191Z 0 [Note] InnoDB: Uses event mutexes
2020-01-07T21:47:59.274194Z 0 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2020-01-07T21:47:59.274196Z 0 [Note] InnoDB: Compressed tables use zlib 1.2.11
2020-01-07T21:47:59.274199Z 0 [Note] InnoDB: Using Linux native AIO
2020-01-07T21:47:59.274482Z 0 [Note] InnoDB: Number of pools: 1
2020-01-07T21:47:59.274639Z 0 [Note] InnoDB: Using CPU crc32 instructions
2020-01-07T21:47:59.276370Z 0 [Note] InnoDB: Initializing buffer pool, total size = 128M, instances = 1, chunk size = 128M
2020-01-07T21:47:59.281119Z 0 [Note] InnoDB: Completed initialization of buffer pool
2020-01-07T21:47:59.282302Z 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority().
2020-01-07T21:47:59.294898Z 0 [Note] InnoDB: Highest supported file format is Barracuda.
2020-01-07T21:47:59.301611Z 0 [Note] InnoDB: Creating shared tablespace for temporary tables
2020-01-07T21:47:59.301665Z 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...
2020-01-07T21:47:59.344888Z 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB.
2020-01-07T21:47:59.345338Z 0 [Note] InnoDB: 96 redo rollback segment(s) found. 96 redo rollback segment(s) are active.
2020-01-07T21:47:59.345345Z 0 [Note] InnoDB: 32 non-redo rollback segment(s) are active.
2020-01-07T21:47:59.346096Z 0 [Note] InnoDB: Waiting for purge to start
2020-01-07T21:47:59.396626Z 0 [Note] InnoDB: 5.7.28 started; log sequence number 2628227
2020-01-07T21:47:59.396804Z 0 [Note] InnoDB: Loading buffer pool(s) from /var/lib/mysql/ib_buffer_pool
2020-01-07T21:47:59.396852Z 0 [Note] Plugin 'FEDERATED' is disabled.
2020-01-07T21:47:59.397717Z 0 [Note] InnoDB: Buffer pool(s) load completed at 200107 21:47:59
2020-01-07T21:47:59.400400Z 0 [Note] Found ca.pem, server-cert.pem and server-key.pem in data directory. Trying to enable SSL support using them.
2020-01-07T21:47:59.400413Z 0 [Note] Skipping generation of SSL certificates as certificate files are present in data directory.
2020-01-07T21:47:59.400770Z 0 [Warning] CA certificate ca.pem is self signed.
2020-01-07T21:47:59.400790Z 0 [Note] Skipping generation of RSA key pair as key files are present in data directory.
2020-01-07T21:47:59.400992Z 0 [Note] Server hostname (bind-address): '127.0.0.1'; port: 3306
2020-01-07T21:47:59.401006Z 0 [Note] - '127.0.0.1' resolves to '127.0.0.1';
2020-01-07T21:47:59.401021Z 0 [Note] Server socket created on IP: '127.0.0.1'.
2020-01-07T21:47:59.403395Z 0 [Warning] Insecure configuration for --pid-file: Location '/tmp' in the path is accessible to all OS users. Consider choosing a different directory.
2020-01-07T21:47:59.408666Z 0 [Note] Event Scheduler: Loaded 0 events
2020-01-07T21:47:59.408808Z 0 [Note] Execution of init_file '/var/lib/mysql-files/7pxJ7t37bI' started.
2020-01-07T21:47:59.409234Z 0 [Note] Execution of init_file '/var/lib/mysql-files/7pxJ7t37bI' ended.
2020-01-07T21:47:59.409284Z 0 [Note] mysqld: ready for connections.
Version: '5.7.28' socket: '/tmp/tmp.q7db4MMdAE/mysqld.sock' port: 3306 MySQL Community Server (GPL)
2020-01-07T21:47:59.409594Z 0 [Note] Giving 0 client threads a chance to die gracefully
2020-01-07T21:47:59.409606Z 0 [Note] Shutting down slave threads
2020-01-07T21:47:59.409609Z 0 [Note] Forcefully disconnecting 0 remaining clients
2020-01-07T21:47:59.409612Z 0 [Note] Event Scheduler: Purging the queue. 0 events
2020-01-07T21:47:59.409663Z 0 [Note] Binlog end
2020-01-07T21:47:59.409938Z 0 [Note] Shutting down plugin 'ngram'
2020-01-07T21:47:59.409944Z 0 [Note] Shutting down plugin 'partition'
2020-01-07T21:47:59.409946Z 0 [Note] Shutting down plugin 'BLACKHOLE'
2020-01-07T21:47:59.409948Z 0 [Note] Shutting down plugin 'ARCHIVE'
2020-01-07T21:47:59.409950Z 0 [Note] Shutting down plugin 'PERFORMANCE_SCHEMA'
2020-01-07T21:47:59.409962Z 0 [Note] Shutting down plugin 'MRG_MYISAM'
2020-01-07T21:47:59.409964Z 0 [Note] Shutting down plugin 'MyISAM'
2020-01-07T21:47:59.409969Z 0 [Note] Shutting down plugin 'INNODB_SYS_VIRTUAL'
2020-01-07T21:47:59.409971Z 0 [Note] Shutting down plugin 'INNODB_SYS_DATAFILES'
2020-01-07T21:47:59.409973Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLESPACES'
2020-01-07T21:47:59.409975Z 0 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN_COLS'
2020-01-07T21:47:59.409976Z 0 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN'
2020-01-07T21:47:59.409978Z 0 [Note] Shutting down plugin 'INNODB_SYS_FIELDS'
2020-01-07T21:47:59.409980Z 0 [Note] Shutting down plugin 'INNODB_SYS_COLUMNS'
2020-01-07T21:47:59.409981Z 0 [Note] Shutting down plugin 'INNODB_SYS_INDEXES'
2020-01-07T21:47:59.409983Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLESTATS'
2020-01-07T21:47:59.409985Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLES'
2020-01-07T21:47:59.409986Z 0 [Note] Shutting down plugin 'INNODB_FT_INDEX_TABLE'
2020-01-07T21:47:59.409988Z 0 [Note] Shutting down plugin 'INNODB_FT_INDEX_CACHE'
2020-01-07T21:47:59.409990Z 0 [Note] Shutting down plugin 'INNODB_FT_CONFIG'
2020-01-07T21:47:59.409991Z 0 [Note] Shutting down plugin 'INNODB_FT_BEING_DELETED'
2020-01-07T21:47:59.409993Z 0 [Note] Shutting down plugin 'INNODB_FT_DELETED'
2020-01-07T21:47:59.409995Z 0 [Note] Shutting down plugin 'INNODB_FT_DEFAULT_STOPWORD'
2020-01-07T21:47:59.409996Z 0 [Note] Shutting down plugin 'INNODB_METRICS'
2020-01-07T21:47:59.409998Z 0 [Note] Shutting down plugin 'INNODB_TEMP_TABLE_INFO'
2020-01-07T21:47:59.409999Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_POOL_STATS'
2020-01-07T21:47:59.410001Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE_LRU'
2020-01-07T21:47:59.410003Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE'
2020-01-07T21:47:59.410004Z 0 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX_RESET'
2020-01-07T21:47:59.410006Z 0 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX'
2020-01-07T21:47:59.410008Z 0 [Note] Shutting down plugin 'INNODB_CMPMEM_RESET'
2020-01-07T21:47:59.410009Z 0 [Note] Shutting down plugin 'INNODB_CMPMEM'
2020-01-07T21:47:59.410011Z 0 [Note] Shutting down plugin 'INNODB_CMP_RESET'
2020-01-07T21:47:59.410012Z 0 [Note] Shutting down plugin 'INNODB_CMP'
2020-01-07T21:47:59.410014Z 0 [Note] Shutting down plugin 'INNODB_LOCK_WAITS'
2020-01-07T21:47:59.410016Z 0 [Note] Shutting down plugin 'INNODB_LOCKS'
2020-01-07T21:47:59.410017Z 0 [Note] Shutting down plugin 'INNODB_TRX'
2020-01-07T21:47:59.410019Z 0 [Note] Shutting down plugin 'InnoDB'
2020-01-07T21:47:59.410083Z 0 [Note] InnoDB: FTS optimize thread exiting.
2020-01-07T21:47:59.410230Z 0 [Note] InnoDB: Starting shutdown...
2020-01-07T21:47:59.511556Z 0 [Note] InnoDB: Dumping buffer pool(s) to /var/lib/mysql/ib_buffer_pool
2020-01-07T21:47:59.511701Z 0 [Note] InnoDB: Buffer pool(s) dump completed at 200107 21:47:59
2020-01-07T21:48:00.958542Z 0 [Note] InnoDB: Shutdown completed; log sequence number 2628246
2020-01-07T21:48:00.960660Z 0 [Note] InnoDB: Removed temporary tablespace data file: "ibtmp1"
2020-01-07T21:48:00.960692Z 0 [Note] Shutting down plugin 'MEMORY'
2020-01-07T21:48:00.960697Z 0 [Note] Shutting down plugin 'CSV'
2020-01-07T21:48:00.960701Z 0 [Note] Shutting down plugin 'sha256_password'
2020-01-07T21:48:00.960703Z 0 [Note] Shutting down plugin 'mysql_native_password'
2020-01-07T21:48:00.960789Z 0 [Note] Shutting down plugin 'binlog'
2020-01-07T21:48:00.962661Z 0 [Note] mysqld: Shutdown complete
2020-01-07T21:59:26.471325Z mysqld_safe Logging to '/var/log/mysql/error.log'.
2020-01-07T21:59:26.486959Z mysqld_safe Starting mysqld daemon with databases from /var/lib/mysql
2020-01-07T21:59:26.643199Z 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see documentation for more details).
2020-01-07T21:59:26.644096Z 0 [Note] /usr/sbin/mysqld (mysqld 5.7.28) starting as process 408 ...
2020-01-07T21:59:26.646176Z 0 [Note] InnoDB: PUNCH HOLE support available
2020-01-07T21:59:26.646190Z 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2020-01-07T21:59:26.646193Z 0 [Note] InnoDB: Uses event mutexes
2020-01-07T21:59:26.646196Z 0 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2020-01-07T21:59:26.646198Z 0 [Note] InnoDB: Compressed tables use zlib 1.2.11
2020-01-07T21:59:26.646201Z 0 [Note] InnoDB: Using Linux native AIO
2020-01-07T21:59:26.646331Z 0 [Note] InnoDB: Number of pools: 1
2020-01-07T21:59:26.646391Z 0 [Note] InnoDB: Using CPU crc32 instructions
2020-01-07T21:59:26.647165Z 0 [Note] InnoDB: Initializing buffer pool, total size = 128M, instances = 1, chunk size = 128M
2020-01-07T21:59:26.651798Z 0 [Note] InnoDB: Completed initialization of buffer pool
2020-01-07T21:59:26.653130Z 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority().
2020-01-07T21:59:27.636212Z 0 [Note] InnoDB: Highest supported file format is Barracuda.
2020-01-07T21:59:27.642182Z 0 [Note] InnoDB: Creating shared tablespace for temporary tables
2020-01-07T21:59:27.642232Z 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...
2020-01-07T21:59:27.689063Z 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB.
2020-01-07T21:59:27.689519Z 0 [Note] InnoDB: 96 redo rollback segment(s) found. 96 redo rollback segment(s) are active.
2020-01-07T21:59:27.689527Z 0 [Note] InnoDB: 32 non-redo rollback segment(s) are active.
2020-01-07T21:59:27.689913Z 0 [Note] InnoDB: Waiting for purge to start
2020-01-07T21:59:27.740941Z 0 [Note] InnoDB: 5.7.28 started; log sequence number 2628246
2020-01-07T21:59:27.741098Z 0 [Note] InnoDB: Loading buffer pool(s) from /var/lib/mysql/ib_buffer_pool
2020-01-07T21:59:27.741221Z 0 [Note] Plugin 'FEDERATED' is disabled.
2020-01-07T21:59:27.810722Z 0 [Note] Found ca.pem, server-cert.pem and server-key.pem in data directory. Trying to enable SSL support using them.
2020-01-07T21:59:27.810737Z 0 [Note] Skipping generation of SSL certificates as certificate files are present in data directory.
2020-01-07T21:59:27.811201Z 0 [Warning] CA certificate ca.pem is self signed.
2020-01-07T21:59:27.811224Z 0 [Note] Skipping generation of RSA key pair as key files are present in data directory.
2020-01-07T21:59:27.811663Z 0 [Note] Server hostname (bind-address): '127.0.0.1'; port: 3306
2020-01-07T21:59:27.811680Z 0 [Note] - '127.0.0.1' resolves to '127.0.0.1';
2020-01-07T21:59:27.811738Z 0 [Note] Server socket created on IP: '127.0.0.1'.
2020-01-07T21:59:27.813580Z 0 [Note] InnoDB: Buffer pool(s) load completed at 200107 21:59:27
2020-01-07T21:59:27.816611Z 0 [ERROR] Fatal error: Can't open and lock privilege tables: Table storage engine for 'user' doesn't have this option
2020-01-07T21:59:27.816628Z 0 [ERROR] Fatal error: Failed to initialize ACL/grant/time zones structures or failed to remove temporary table files.
2020-01-07T21:59:27.816674Z 0 [ERROR] Aborting
2020-01-07T21:59:27.816694Z 0 [Note] Binlog end
2020-01-07T21:59:27.816756Z 0 [Note] Shutting down plugin 'ngram'
2020-01-07T21:59:27.816763Z 0 [Note] Shutting down plugin 'partition'
2020-01-07T21:59:27.816765Z 0 [Note] Shutting down plugin 'BLACKHOLE'
2020-01-07T21:59:27.816767Z 0 [Note] Shutting down plugin 'ARCHIVE'
2020-01-07T21:59:27.816769Z 0 [Note] Shutting down plugin 'PERFORMANCE_SCHEMA'
2020-01-07T21:59:27.816803Z 0 [Note] Shutting down plugin 'MRG_MYISAM'
2020-01-07T21:59:27.816806Z 0 [Note] Shutting down plugin 'MyISAM'
2020-01-07T21:59:27.816811Z 0 [Note] Shutting down plugin 'INNODB_SYS_VIRTUAL'
2020-01-07T21:59:27.816814Z 0 [Note] Shutting down plugin 'INNODB_SYS_DATAFILES'
2020-01-07T21:59:27.816816Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLESPACES'
2020-01-07T21:59:27.816817Z 0 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN_COLS'
2020-01-07T21:59:27.816819Z 0 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN'
2020-01-07T21:59:27.816821Z 0 [Note] Shutting down plugin 'INNODB_SYS_FIELDS'
2020-01-07T21:59:27.816822Z 0 [Note] Shutting down plugin 'INNODB_SYS_COLUMNS'
2020-01-07T21:59:27.816824Z 0 [Note] Shutting down plugin 'INNODB_SYS_INDEXES'
2020-01-07T21:59:27.816826Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLESTATS'
2020-01-07T21:59:27.816828Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLES'
2020-01-07T21:59:27.816829Z 0 [Note] Shutting down plugin 'INNODB_FT_INDEX_TABLE'
2020-01-07T21:59:27.816831Z 0 [Note] Shutting down plugin 'INNODB_FT_INDEX_CACHE'
2020-01-07T21:59:27.816833Z 0 [Note] Shutting down plugin 'INNODB_FT_CONFIG'
2020-01-07T21:59:27.816834Z 0 [Note] Shutting down plugin 'INNODB_FT_BEING_DELETED'
2020-01-07T21:59:27.816836Z 0 [Note] Shutting down plugin 'INNODB_FT_DELETED'
2020-01-07T21:59:27.816838Z 0 [Note] Shutting down plugin 'INNODB_FT_DEFAULT_STOPWORD'
2020-01-07T21:59:27.816839Z 0 [Note] Shutting down plugin 'INNODB_METRICS'
2020-01-07T21:59:27.816841Z 0 [Note] Shutting down plugin 'INNODB_TEMP_TABLE_INFO'
2020-01-07T21:59:27.816843Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_POOL_STATS'
2020-01-07T21:59:27.816844Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE_LRU'
2020-01-07T21:59:27.816846Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE'
2020-01-07T21:59:27.816848Z 0 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX_RESET'
2020-01-07T21:59:27.816849Z 0 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX'
2020-01-07T21:59:27.816851Z 0 [Note] Shutting down plugin 'INNODB_CMPMEM_RESET'
2020-01-07T21:59:27.816852Z 0 [Note] Shutting down plugin 'INNODB_CMPMEM'
2020-01-07T21:59:27.816854Z 0 [Note] Shutting down plugin 'INNODB_CMP_RESET'
2020-01-07T21:59:27.816856Z 0 [Note] Shutting down plugin 'INNODB_CMP'
2020-01-07T21:59:27.816857Z 0 [Note] Shutting down plugin 'INNODB_LOCK_WAITS'
2020-01-07T21:59:27.816859Z 0 [Note] Shutting down plugin 'INNODB_LOCKS'
2020-01-07T21:59:27.816861Z 0 [Note] Shutting down plugin 'INNODB_TRX'
2020-01-07T21:59:27.816863Z 0 [Note] Shutting down plugin 'InnoDB'
2020-01-07T21:59:27.816936Z 0 [Note] InnoDB: FTS optimize thread exiting.
2020-01-07T21:59:27.817047Z 0 [Note] InnoDB: Starting shutdown...
2020-01-07T21:59:27.922074Z 0 [Note] InnoDB: Dumping buffer pool(s) to /var/lib/mysql/ib_buffer_pool
2020-01-07T21:59:27.922231Z 0 [Note] InnoDB: Buffer pool(s) dump completed at 200107 21:59:27
2020-01-07T21:59:29.468679Z 0 [Note] InnoDB: Shutdown completed; log sequence number 2628265
2020-01-07T21:59:29.470792Z 0 [Note] InnoDB: Removed temporary tablespace data file: "ibtmp1"
2020-01-07T21:59:29.470822Z 0 [Note] Shutting down plugin 'MEMORY'
2020-01-07T21:59:29.470827Z 0 [Note] Shutting down plugin 'CSV'
2020-01-07T21:59:29.470830Z 0 [Note] Shutting down plugin 'sha256_password'
2020-01-07T21:59:29.470832Z 0 [Note] Shutting down plugin 'mysql_native_password'
2020-01-07T21:59:29.470919Z 0 [Note] Shutting down plugin 'binlog'
2020-01-07T21:59:29.471136Z 0 [Note] /usr/sbin/mysqld: Shutdown complete
2020-01-07T21:59:29.582468Z mysqld_safe mysqld from pid file /var/run/mysqld/mysqld.pid ended
So any Idea why I am facing this problem or any hint that can lend me to the right way to do it.
When you create the docker image, it generates an initial database.
The problem is that the files in this location are then mounted on an overlay file system when you try running.
These files can't be used by mysql when it starts up because they're not modifiable in-place.
When you chown, it creates 'fresh' copies of the files, which allows mysql to start up as these files are now modifiable in-place.
If you want a container that can just launch a fresh mysql, the best workaround for this is to delete everything below /var/lib/mysql as part of the image creation step. It will recreate the database on first start, allowing it to be used as needed.
After I did a little research I found the solution, I just need to run this following command :
chown -R mysql:mysql /var/lib/mysql /var/run/mysqld // change the ownership of all files and subdirectories under the /var/lib/mysql and /var/run/mysqld
then I can start mysql with no problems
service mysql start
and now it works perfectly
..
[info] MySQL Community Server 5.7.28 is started.
or I can do it this way :
find /var/lib/mysql -type f -exec touch {} \; //find every file in that directory and execute touch to touch all the files and change the files access.
or you can do it as #Petesh said:
RUN printf '%s\n' 'mysql-community-server mysql-community-server/root-pass password your_password' | debconf-set-selections && \
printf '%s\n' 'mysql-community-server mysql-community-server/re-root-pass password your_password' | debconf-set-selections && \
apt -y install mysql-server && \
rm -rf /var/lib/mysql/* // remove all the files in this directory and when you will run `service mysql start` it'll recreate the database and mysql will start.
I really don't understand why I need to change the user and group of the files in that directories, maybe it's due the build way of the Dockerfile because it uses intermediate containers during the build.
because when I build the image debian:buster without Dockerfile and run the container then install the mysql-server manually and start it, it started perfectly.
correct me if I am wrong.
for more information mysql __ Chown Command __ github
I'm currently trying to deploy Jhipster registry/mysql/gateway/Microservice to openshift for a testing purpose. Since I'm new to both Openshift and Jhipster, I was not be able to figure out a way to make gateway work. Both my JHipster registry and DB works well and waiting to receive handshake from gateway but gate was not up and get stuck right after the JHipster logo without any useful log. Could anyone pleaase help me to figure out what's wrong with it?
Jhipster has been deployed by using: kompose --file src/main/docker/app.yml --provider openshift up
**Gateway params:**
EUREKA_CLIENT_SERVICE_URL_DEFAULTZONE=http://admin:${jhipster.registry.password}#jhipster-registry/eureka
JHIPSTER_SLEEP=30
SPRING_CLOUD_CONFIG_URI=http://admin:${jhipster.registry.password}#jhipster-registry/config
SPRING_DATASOURCE_URL=jdbc:mysql://htgateway-mysql:3306/htgateway?useUnicode=true&characterEncoding=utf8&useSSL=false
SPRING_PROFILES_ACTIVE=prod, swagger
**Registry**:
JHIPSTER_REGISTRY_PASSWORD=***
SPRING_CLOUD_CONFIG_SERVER_NATIVE_SEARCH_LOCATIONS=file:./central-config/localhost-config/
SPRING_CLOUD_CONFIG_SERVER_NATIVE_SEARCH_LOCATIONS=file:./central-config/docker-config/
SPRING_PROFILES_ACTIVE=dev,native,swagger
SPRING_SECURITY_USER_PASSWORD=***
I'm pretty sure that gateway and microservice was working 3 days ago but it's not working at all lately even I rebuilt all with a brand new linux centos machine in Azure (additonal: docker-compose up also not working properly in linux vm)
JHipster registry:
:: JHipster Registry :: Running Spring Boot 2.0.3.RELEASE ::
:: http://www.jhipster.tech ::
2018-07-11 01:45:53.070 INFO 7 --- [ main] i.g.j.registry.JHipsterRegistryApp : The following profiles are active: dev,native,swagger
2018-07-11 01:45:57.231 WARN 7 --- [ main] c.n.c.sources.URLConfigurationSource : No URLs will be polled as dynamic configuration sources.
2018-07-11 01:45:59.437 INFO 7 --- [ main] i.g.j.registry.config.WebConfigurer : Web application configuration, using profiles: dev
2018-07-11 01:45:59.448 INFO 7 --- [ main] i.g.j.registry.config.WebConfigurer : Web application fully configured
2018-07-11 01:45:59.638 ERROR 7 --- [ main] i.g.j.r.security.jwt.TokenProvider : WARNING! You are using the default JWT secret token, this **must** be changed in production!
2018-07-11 01:46:02.023 WARN 7 --- [ main] c.n.c.sources.URLConfigurationSource : No URLs will be polled as dynamic configuration sources.
2018-07-11 01:46:02.873 DEBUG 7 --- [ main] i.g.j.c.apidoc.SwaggerAutoConfiguration : Starting Swagger
2018-07-11 01:46:02.893 DEBUG 7 --- [ main] i.g.j.c.apidoc.SwaggerAutoConfiguration : Started Swagger in 20 ms
2018-07-11 01:46:04.556 INFO 7 --- [ main] com.netflix.discovery.DiscoveryClient : Initializing Eureka in region us-east-1
2018-07-11 01:46:04.556 INFO 7 --- [ main] com.netflix.discovery.DiscoveryClient : Client configured to neither register nor query for data.
2018-07-11 01:46:04.566 INFO 7 --- [ main] com.netflix.discovery.DiscoveryClient : Discovery Client initialized at timestamp 1531273564565 with initial instances count: 0
2018-07-11 01:46:04.710 INFO 7 --- [ main] c.n.d.provider.DiscoveryJerseyProvider : Using JSON encoding codec LegacyJacksonJson
2018-07-11 01:46:04.710 INFO 7 --- [ main] c.n.d.provider.DiscoveryJerseyProvider : Using JSON decoding codec LegacyJacksonJson
2018-07-11 01:46:04.710 INFO 7 --- [ main] c.n.d.provider.DiscoveryJerseyProvider : Using XML encoding codec XStreamXml
2018-07-11 01:46:04.710 INFO 7 --- [ main] c.n.d.provider.DiscoveryJerseyProvider : Using XML decoding codec XStreamXml
2018-07-11 01:46:06.080 INFO 7 --- [ main] c.n.d.provider.DiscoveryJerseyProvider : Using JSON encoding codec LegacyJacksonJson
2018-07-11 01:46:06.081 INFO 7 --- [ main] c.n.d.provider.DiscoveryJerseyProvider : Using JSON decoding codec LegacyJacksonJson
2018-07-11 01:46:06.081 INFO 7 --- [ main] c.n.d.provider.DiscoveryJerseyProvider : Using XML encoding codec XStreamXml
2018-07-11 01:46:06.081 INFO 7 --- [ main] c.n.d.provider.DiscoveryJerseyProvider : Using XML decoding codec XStreamXml
2018-07-11 01:46:06.456 INFO 7 --- [ main] i.g.j.registry.JHipsterRegistryApp : Started JHipsterRegistryApp in 16.619 seconds (JVM running for 17.477)
2018-07-11 01:46:06.464 INFO 7 --- [ main] i.g.j.registry.JHipsterRegistryApp :
----------------------------------------------------------
Application 'jhipster-registry' is running! Access URLs:
Local: http://localhost:8761
External: http://172.17.0.7:8761
Profile(s): [dev, native, swagger]
----------------------------------------------------------
2018-07-11 01:46:06.465 ERROR 7 --- [ main] i.g.j.registry.JHipsterRegistryApp :
----------------------------------------------------------
Your JWT secret key is not configured using Spring Cloud Config, you will not be able to
use the JHipster Registry dashboards to monitor external applications.
Please read the documentation at http://www.jhipster.tech/jhipster-registry/
----------------------------------------------------------
DB:
Initializing database
2018-07-11T01:18:46.046940Z 0 [Warning] InnoDB: New log files created, LSN=45790
2018-07-11T01:18:46.292450Z 0 [Warning] InnoDB: Creating foreign key constraint system tables.
2018-07-11T01:18:46.393396Z 0 [Warning] No existing UUID has been found, so we assume that this is the first time that this server has been started. Generating a new UUID: 5bc6e58a-84a8-11e8-84b7-0242ac110008.
2018-07-11T01:18:46.401694Z 0 [Warning] Gtid table is not ready to be used. Table 'mysql.gtid_executed' cannot be opened.
2018-07-11T01:18:46.408709Z 1 [Warning] root#localhost is created with an empty password ! Please consider switching off the --initialize-insecure option.
2018-07-11T01:18:49.829982Z 1 [Warning] 'user' entry 'root#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:49.830017Z 1 [Warning] 'user' entry 'mysql.session#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:49.830027Z 1 [Warning] 'user' entry 'mysql.sys#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:49.830047Z 1 [Warning] 'db' entry 'performance_schema mysql.session#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:49.830054Z 1 [Warning] 'db' entry 'sys mysql.sys#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:49.830068Z 1 [Warning] 'proxies_priv' entry '# root#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:49.830100Z 1 [Warning] 'tables_priv' entry 'user mysql.session#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:49.830111Z 1 [Warning] 'tables_priv' entry 'sys_config mysql.sys#localhost' ignored in --skip-name-resolve mode.
Database initialized
Initializing certificates
Generating a 2048 bit RSA private key
.............................+++
................+++
unable to write 'random state'
writing new private key to 'ca-key.pem'
-----
Generating a 2048 bit RSA private key
...........................................+++
....+++
unable to write 'random state'
writing new private key to 'server-key.pem'
-----
Generating a 2048 bit RSA private key
.....................................................+++
................................+++
unable to write 'random state'
writing new private key to 'client-key.pem'
-----
Certificates initialized
MySQL init process in progress...
2018-07-11T01:18:53.373337Z 0 [Note] mysqld (mysqld 5.7.20) starting as process 90 ...
2018-07-11T01:18:53.377206Z 0 [Note] InnoDB: PUNCH HOLE support available
2018-07-11T01:18:53.377227Z 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2018-07-11T01:18:53.377231Z 0 [Note] InnoDB: Uses event mutexes
2018-07-11T01:18:53.377235Z 0 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2018-07-11T01:18:53.377239Z 0 [Note] InnoDB: Compressed tables use zlib 1.2.3
2018-07-11T01:18:53.377243Z 0 [Note] InnoDB: Using Linux native AIO
2018-07-11T01:18:53.377553Z 0 [Note] InnoDB: Number of pools: 1
2018-07-11T01:18:53.377689Z 0 [Note] InnoDB: Using CPU crc32 instructions
2018-07-11T01:18:53.379951Z 0 [Note] InnoDB: Initializing buffer pool, total size = 128M, instances = 1, chunk size = 128M
2018-07-11T01:18:53.390423Z 0 [Note] InnoDB: Completed initialization of buffer pool
2018-07-11T01:18:53.399872Z 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority().
2018-07-11T01:18:53.405088Z 0 [Note] InnoDB: Highest supported file format is Barracuda.
2018-07-11T01:18:53.425642Z 0 [Note] InnoDB: Creating shared tablespace for temporary tables
2018-07-11T01:18:53.425743Z 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...
2018-07-11T01:18:53.528298Z 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB.
2018-07-11T01:18:53.529297Z 0 [Note] InnoDB: 96 redo rollback segment(s) found. 96 redo rollback segment(s) are active.
2018-07-11T01:18:53.529308Z 0 [Note] InnoDB: 32 non-redo rollback segment(s) are active.
2018-07-11T01:18:53.529551Z 0 [Note] InnoDB: Waiting for purge to start
2018-07-11T01:18:53.579717Z 0 [Note] InnoDB: 5.7.20 started; log sequence number 2565377
2018-07-11T01:18:53.580033Z 0 [Note] Plugin 'FEDERATED' is disabled.
2018-07-11T01:18:53.580711Z 0 [Note] InnoDB: Loading buffer pool(s) from /var/lib/mysql/ib_buffer_pool
2018-07-11T01:18:53.582675Z 0 [Note] InnoDB: Buffer pool(s) load completed at 180711 1:18:53
2018-07-11T01:18:53.605379Z 0 [Warning] 'user' entry 'root#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:53.605423Z 0 [Warning] 'user' entry 'mysql.session#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:53.605432Z 0 [Warning] 'user' entry 'mysql.sys#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:53.605457Z 0 [Warning] 'db' entry 'performance_schema mysql.session#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:53.605463Z 0 [Warning] 'db' entry 'sys mysql.sys#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:53.605478Z 0 [Warning] 'proxies_priv' entry '# root#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:53.607231Z 0 [Warning] 'tables_priv' entry 'user mysql.session#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:53.607244Z 0 [Warning] 'tables_priv' entry 'sys_config mysql.sys#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:53.617199Z 0 [Note] Event Scheduler: Loaded 0 events
2018-07-11T01:18:53.622678Z 0 [Note] mysqld: ready for connections.
Version: '5.7.20' socket: '/var/run/mysqld/mysqld.sock' port: 0 MySQL Community Server (GPL)
2018-07-11T01:18:53.622700Z 0 [Note] Executing 'SELECT * FROM INFORMATION_SCHEMA.TABLES;' to get a list of tables using the deprecated partition engine. You may use the startup option '--disable-partition-engine-check' to skip this check.
2018-07-11T01:18:53.622703Z 0 [Note] Beginning of list of non-natively partitioned tables
2018-07-11T01:18:53.635430Z 0 [Note] End of list of non-natively partitioned tables
Warning: Unable to load '/usr/share/zoneinfo/iso3166.tab' as time zone. Skipping it.
Warning: Unable to load '/usr/share/zoneinfo/leap-seconds.list' as time zone. Skipping it.
Warning: Unable to load '/usr/share/zoneinfo/zone.tab' as time zone. Skipping it.
2018-07-11T01:18:58.105504Z 5 [Warning] 'user' entry 'root#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:58.105532Z 5 [Warning] 'user' entry 'mysql.session#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:58.105541Z 5 [Warning] 'user' entry 'mysql.sys#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:58.105573Z 5 [Warning] 'db' entry 'performance_schema mysql.session#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:58.105580Z 5 [Warning] 'db' entry 'sys mysql.sys#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:58.105593Z 5 [Warning] 'proxies_priv' entry '# root#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:58.105623Z 5 [Warning] 'tables_priv' entry 'user mysql.session#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:58.105633Z 5 [Warning] 'tables_priv' entry 'sys_config mysql.sys#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:18:58.121444Z 0 [Note] Giving 1 client threads a chance to die gracefully
2018-07-11T01:18:58.121462Z 0 [Note] Shutting down slave threads
2018-07-11T01:19:00.121609Z 0 [Note] Forcefully disconnecting 0 remaining clients
2018-07-11T01:19:00.121639Z 0 [Note] Event Scheduler: Purging the queue. 0 events
2018-07-11T01:19:00.122581Z 0 [Note] Binlog end
2018-07-11T01:19:00.123328Z 0 [Note] Shutting down plugin 'ngram'
2018-07-11T01:19:00.123345Z 0 [Note] Shutting down plugin 'BLACKHOLE'
2018-07-11T01:19:00.123350Z 0 [Note] Shutting down plugin 'partition'
2018-07-11T01:19:00.123353Z 0 [Note] Shutting down plugin 'ARCHIVE'
2018-07-11T01:19:00.123356Z 0 [Note] Shutting down plugin 'INNODB_SYS_VIRTUAL'
2018-07-11T01:19:00.123360Z 0 [Note] Shutting down plugin 'INNODB_SYS_DATAFILES'
2018-07-11T01:19:00.123363Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLESPACES'
2018-07-11T01:19:00.123365Z 0 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN_COLS'
2018-07-11T01:19:00.123368Z 0 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN'
2018-07-11T01:19:00.123371Z 0 [Note] Shutting down plugin 'INNODB_SYS_FIELDS'
2018-07-11T01:19:00.123374Z 0 [Note] Shutting down plugin 'INNODB_SYS_COLUMNS'
2018-07-11T01:19:00.123377Z 0 [Note] Shutting down plugin 'INNODB_SYS_INDEXES'
2018-07-11T01:19:00.123380Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLESTATS'
2018-07-11T01:19:00.123383Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLES'
2018-07-11T01:19:00.123385Z 0 [Note] Shutting down plugin 'INNODB_FT_INDEX_TABLE'
2018-07-11T01:19:00.123388Z 0 [Note] Shutting down plugin 'INNODB_FT_INDEX_CACHE'
2018-07-11T01:19:00.123391Z 0 [Note] Shutting down plugin 'INNODB_FT_CONFIG'
2018-07-11T01:19:00.123394Z 0 [Note] Shutting down plugin 'INNODB_FT_BEING_DELETED'
2018-07-11T01:19:00.123397Z 0 [Note] Shutting down plugin 'INNODB_FT_DELETED'
2018-07-11T01:19:00.123399Z 0 [Note] Shutting down plugin 'INNODB_FT_DEFAULT_STOPWORD'
2018-07-11T01:19:00.123402Z 0 [Note] Shutting down plugin 'INNODB_METRICS'
2018-07-11T01:19:00.123405Z 0 [Note] Shutting down plugin 'INNODB_TEMP_TABLE_INFO'
2018-07-11T01:19:00.123408Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_POOL_STATS'
2018-07-11T01:19:00.123410Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE_LRU'
2018-07-11T01:19:00.123413Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE'
2018-07-11T01:19:00.123416Z 0 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX_RESET'
2018-07-11T01:19:00.123419Z 0 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX'
2018-07-11T01:19:00.123421Z 0 [Note] Shutting down plugin 'INNODB_CMPMEM_RESET'
2018-07-11T01:19:00.123424Z 0 [Note] Shutting down plugin 'INNODB_CMPMEM'
2018-07-11T01:19:00.123427Z 0 [Note] Shutting down plugin 'INNODB_CMP_RESET'
2018-07-11T01:19:00.123430Z 0 [Note] Shutting down plugin 'INNODB_CMP'
2018-07-11T01:19:00.123432Z 0 [Note] Shutting down plugin 'INNODB_LOCK_WAITS'
2018-07-11T01:19:00.123435Z 0 [Note] Shutting down plugin 'INNODB_LOCKS'
2018-07-11T01:19:00.123438Z 0 [Note] Shutting down plugin 'INNODB_TRX'
2018-07-11T01:19:00.123441Z 0 [Note] Shutting down plugin 'InnoDB'
2018-07-11T01:19:00.123486Z 0 [Note] InnoDB: FTS optimize thread exiting.
2018-07-11T01:19:00.133642Z 0 [Note] InnoDB: Starting shutdown...
2018-07-11T01:19:00.233877Z 0 [Note] InnoDB: Dumping buffer pool(s) to /var/lib/mysql/ib_buffer_pool
2018-07-11T01:19:00.234237Z 0 [Note] InnoDB: Buffer pool(s) dump completed at 180711 1:19:00
2018-07-11T01:19:01.681745Z 0 [Note] InnoDB: Shutdown completed; log sequence number 12156809
2018-07-11T01:19:01.683697Z 0 [Note] InnoDB: Removed temporary tablespace data file: "ibtmp1"
2018-07-11T01:19:01.683710Z 0 [Note] Shutting down plugin 'MRG_MYISAM'
2018-07-11T01:19:01.683718Z 0 [Note] Shutting down plugin 'MyISAM'
2018-07-11T01:19:01.683727Z 0 [Note] Shutting down plugin 'CSV'
2018-07-11T01:19:01.683731Z 0 [Note] Shutting down plugin 'MEMORY'
2018-07-11T01:19:01.683735Z 0 [Note] Shutting down plugin 'PERFORMANCE_SCHEMA'
2018-07-11T01:19:01.683773Z 0 [Note] Shutting down plugin 'sha256_password'
2018-07-11T01:19:01.683795Z 0 [Note] Shutting down plugin 'mysql_native_password'
2018-07-11T01:19:01.683930Z 0 [Note] Shutting down plugin 'binlog'
2018-07-11T01:19:01.686021Z 0 [Note] mysqld: Shutdown complete
MySQL init process done. Ready for start up.
2018-07-11T01:19:01.968822Z 0 [Note] mysqld (mysqld 5.7.20) starting as process 1 ...
2018-07-11T01:19:01.972476Z 0 [Note] InnoDB: PUNCH HOLE support available
2018-07-11T01:19:01.972494Z 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2018-07-11T01:19:01.972499Z 0 [Note] InnoDB: Uses event mutexes
2018-07-11T01:19:01.972503Z 0 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2018-07-11T01:19:01.972507Z 0 [Note] InnoDB: Compressed tables use zlib 1.2.3
2018-07-11T01:19:01.972510Z 0 [Note] InnoDB: Using Linux native AIO
2018-07-11T01:19:01.972879Z 0 [Note] InnoDB: Number of pools: 1
2018-07-11T01:19:01.973031Z 0 [Note] InnoDB: Using CPU crc32 instructions
2018-07-11T01:19:01.975195Z 0 [Note] InnoDB: Initializing buffer pool, total size = 128M, instances = 1, chunk size = 128M
2018-07-11T01:19:01.985489Z 0 [Note] InnoDB: Completed initialization of buffer pool
2018-07-11T01:19:01.988059Z 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority().
2018-07-11T01:19:02.000190Z 0 [Note] InnoDB: Highest supported file format is Barracuda.
2018-07-11T01:19:02.017281Z 0 [Note] InnoDB: Creating shared tablespace for temporary tables
2018-07-11T01:19:02.017374Z 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...
2018-07-11T01:19:02.126848Z 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB.
2018-07-11T01:19:02.127715Z 0 [Note] InnoDB: 96 redo rollback segment(s) found. 96 redo rollback segment(s) are active.
2018-07-11T01:19:02.127726Z 0 [Note] InnoDB: 32 non-redo rollback segment(s) are active.
2018-07-11T01:19:02.128093Z 0 [Note] InnoDB: Waiting for purge to start
2018-07-11T01:19:02.178251Z 0 [Note] InnoDB: 5.7.20 started; log sequence number 12156809
2018-07-11T01:19:02.178487Z 0 [Note] Plugin 'FEDERATED' is disabled.
2018-07-11T01:19:02.179702Z 0 [Note] InnoDB: Loading buffer pool(s) from /var/lib/mysql/ib_buffer_pool
2018-07-11T01:19:02.195570Z 0 [Note] InnoDB: Buffer pool(s) load completed at 180711 1:19:02
2018-07-11T01:19:02.197609Z 0 [Note] Server hostname (bind-address): '*'; port: 3306
2018-07-11T01:19:02.198096Z 0 [Note] IPv6 is available.
2018-07-11T01:19:02.198133Z 0 [Note] - '::' resolves to '::';
2018-07-11T01:19:02.198157Z 0 [Note] Server socket created on IP: '::'.
2018-07-11T01:19:02.233539Z 0 [Warning] 'user' entry 'root#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:19:02.233601Z 0 [Warning] 'user' entry 'mysql.session#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:19:02.233611Z 0 [Warning] 'user' entry 'mysql.sys#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:19:02.233636Z 0 [Warning] 'db' entry 'performance_schema mysql.session#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:19:02.233642Z 0 [Warning] 'db' entry 'sys mysql.sys#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:19:02.233656Z 0 [Warning] 'proxies_priv' entry '# root#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:19:02.236013Z 0 [Warning] 'tables_priv' entry 'user mysql.session#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:19:02.236031Z 0 [Warning] 'tables_priv' entry 'sys_config mysql.sys#localhost' ignored in --skip-name-resolve mode.
2018-07-11T01:19:02.243545Z 0 [Note] Event Scheduler: Loaded 0 events
2018-07-11T01:19:02.244677Z 0 [Note] mysqld: ready for connections.
Version: '5.7.20' socket: '/var/run/mysqld/mysqld.sock' port: 3306 MySQL Community Server (GPL)
2018-07-11T01:19:02.244693Z 0 [Note] Executing 'SELECT * FROM INFORMATION_SCHEMA.TABLES;' to get a list of tables using the deprecated partition engine. You may use the startup option '--disable-partition-engine-check' to skip this check.
2018-07-11T01:19:02.244697Z 0 [Note] Beginning of list of non-natively partitioned tables
2018-07-11T01:19:02.261578Z 0 [Note] End of list of non-natively partitioned tables
Gateway:
The application will start in 30s...
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:: JHipster ߤ㠠:: Running Spring Boot 2.0.3.RELEASE ::
:: https://www.jhipster.tech ::
I met a issue with error shows(when deploy dpdk on redhat) :
sudo: x86_64-native-linuxapp-gcc/app/test: command not found
I am not sure what is the matter.
Now I cannot test dpdk, could you someone help me if you met this before.
There are some detailed information about my system below.
FYI.
Kernel version
3.10.0-693.11.1.el7.x86_64
[root#cnhzdhcp16557 usertools]# ./dpdk-setup.sh
Build x86_64-native-linuxapp-gcc
...
== Build app/test-crypto-perf
== Build app/test-eventdev
Build complete [x86_64-native-linuxapp-gcc]
Installation cannot run with T defined and DESTDIR undefined
Insert IGB UIO module
Unloading any existing DPDK UIO module
Loading DPDK UIO module
Insert VFIO module
Unloading any existing VFIO module
Loading VFIO module
chmod /dev/vfio
OK
Insert KNI module
Unloading any existing DPDK KNI module
Loading DPDK KNI module
Press enter to continue ...
Network devices using kernel driver
0000:00:19.0 'Ethernet Connection I217-V 153b' if=enp0s25 drv=e1000e unused=igb_uio Active
0000:02:00.0 'Centrino Advanced-N 6235 088e' if=wlo1 drv=iwlwifi unused=igb_uio
Huge page information
AnonHugePages: 98304 kB
HugePages_Total: 128
HugePages_Free: 128
HugePages_Rsvd: 0
HugePages_Surp: 0
Hugepagesize: 2048 kB
Run test application ($RTE_TARGET/app/test)
Enter hex bitmask of cores to execute test app on
Example: to execute app on cores 0 to 7, enter 0xff
bitmask: f
Launching app
sudo: x86_64-native-linuxapp-gcc/app/test: command not found
Run testpmd application in interactive mode ($RTE_TARGET/app/testpmd)
Enter hex bitmask of cores to execute test app on
Example: to execute app on cores 0 to 7, enter 0xff
bitmask: f
Launching app
EAL: Detected 4 lcore(s)
EAL: No free hugepages reported in hugepages-1048576kB
EAL: Probing VFIO support...
EAL: PCI device 0000:00:19.0 on NUMA socket -1
EAL: Invalid NUMA socket, default to 0
EAL: probe driver: 8086:153b net_e1000_em
EAL: No probed ethernet devices
Interactive-mode selected
USER1: create a new mbuf pool : n=171456, size=2176,
socket=0
EAL: Error - exiting with code: 1
Cause: Creation of mbuf pool for socket 0 failed: Cannot allocate memory
The test application should be build manually with make test... command. What you really want is the testpmd application to work. There are two issues:
EAL: No probed ethernet devices log means there are no NICs available for testpmd. You need to bind your NIC to igb_uio in order to use in with DPDK application.
Cause: Creation of mbuf pool for socket 0 failed: Cannot allocate memory log means there are no enough huge pages to allocate mempool. Indeed:
HugePages_Free: 128
Hugepagesize: 2048 kB
There are 128 pages 2M each, which makes 256M of available memory. While testpmd tries to allocate create a new mbuf pool : n=171456, size=2176 which makes 171456 * 2176 = 373M, so it fails.
The solution would be to either allocate more huge pages or to run testpmd with --total-num-mbufs command line option.
I was installing Torque 6.1.0 on a Ubuntu 16.04 Workstation, but the
installation doesn't seem to recognize how many cores and threads the
machine has. The only node I set up showed a status of "state=down" and
any job would trigger an error saying "not enough of the right type
of nodes". In fact, the workstation has 56 threads or 28 physical cores
on 2 processors, and I only want to use 54 threads or 27 physical cores
for the shared computing jobs. I realized that this might be related to the configuration of cgroup or NUMA starting from Torque V6.0 which I am not if I was doing the right thing while installing. I indeed had the cgroup enabled, but not sure if I also need to configure NUMA-aware function to be enabled as well. Below are some outputs of current configs. What should I do? Thanks.
$ pbsnodes
node1
state = down
power_state = Running
np = 54
ntype = cluster
mom_service_port = 15002
mom_manager_port = 15003
total_sockets = 0
total_numa_nodes = 0
total_cores = 0
total_threads = 0
dedicated_sockets = 0
dedicated_numa_nodes = 0
dedicated_cores = 0
dedicated_threads = 0
$ lssubsys -am
cpuset /sys/fs/cgroup/cpuset
cpu,cpuacct /sys/fs/cgroup/cpu,cpuacct
blkio /sys/fs/cgroup/blkio
memory /sys/fs/cgroup/memory
devices /sys/fs/cgroup/devices
freezer /sys/fs/cgroup/freezer
net_cls,net_prio /sys/fs/cgroup/net_cls,net_prio
perf_event /sys/fs/cgroup/perf_event
hugetlb /sys/fs/cgroup/hugetlb
pids /sys/fs/cgroup/pids
There is also a fishy part that it seems the server cannot see the node I defined already on the server's configure file. This can be seen on the /var/spool/torque/server_logs log file:
12/27/2016 15:48:33.147;01;PBS_Server.2692;Svr;PBS_Server;LOG_ERROR::get_node_from_str, Node node1 is reporting on node NapaValley, which pbs_server doesn't know about
12/27/2016 15:49:18.232;01;PBS_Server.2692;Svr;PBS_Server;LOG_ERROR::get_node_from_str, Node node1 is reporting on node NapaValley, which pbs_server doesn't know about
12/27/2016 15:49:25.491;08;PBS_Server.2696;Job;0.NapaValley;Job deleted at request of cquic#localhost
12/27/2016 15:49:27.023;08;PBS_Server.2657;Job;0.NapaValley;on_job_exit valid pjob: 0.NapaValley (substate=59)
12/27/2016 15:49:32.996;256;PBS_Server.2657;Job;0.NapaValley;dequeuing from batch, state COMPLETE
12/27/2016 15:49:59.722;256;PBS_Server.2696;Job;1.NapaValley;enqueuing into batch, state 1 hop 1
12/27/2016 15:49:59.722;08;PBS_Server.2696;Job;perform_commit_work;job_id: 1.NapaValley
12/27/2016 15:49:59.722;02;PBS_Server.2696;node;close_conn;Closing connection 9 and calling its accompanying function on close
12/27/2016 15:49:59.795;64;PBS_Server.2692;Req;node_spec;job allocation request exceeds currently available cluster nodes, 1 requested, 0 available
12/27/2016 15:49:59.796;08;PBS_Server.2692;Job;1.NapaValley;Job Modified at request of root#localhost
12/27/2016 15:50:03.312;01;PBS_Server.2696;Svr;PBS_Server;LOG_ERROR::get_node_from_str, Node node1 is reporting on node NapaValley, which pbs_server doesn't know about
On my /etc/hosts, I have
127.0.0.1 localhost node1
127.0.0.1 NapaValley
PS: I have tried to mount cpu and other modules to /var/spool/torque/cgroup directories, but lssubsys -am still showed the same information as above. I assume they should have been mounted?
A node will report to the server with a name returned by the gethostbyname call. Based on the log lines you posted, the server and the node don't agree on that name. You can have pbs_mom return a different name by starting it with the -H option:
http://docs.adaptivecomputing.com/torque/6-0-2/adminGuide/help.htm#topics/torque/commands/pbs_mom.htm#-h
"-H hostname Sets the MOM's hostname. This can be useful on multi-homed networks."
This is equivalent to setting $mom_host node1 in /var/spool/torque/mom_priv/config.
My MySQL server just stopped working after ESXi server restart...
It does not start automatically, and I can't start it from my Unix shell.
~# service mysql restart
restart: Unknown instance:
~# sudo service mysql start
start: Job failed to start
~# sudo -u mysql mysqld
~#
~# netstat -tap | grep mysql
~#
~# service mysql restart
restart: Unknown instance:
Files at /var/log/ : mysql.err and mysql.log are empty.
File here /var/log/mysql/error.log has some info:
Version: '5.1.62-0ubuntu0.11.10.1' socket: '/var/run/mysqld/mysqld.sock' port: 3306 (Ubuntu)
130410 9:50:54 [ERROR] /usr/sbin/mysqld: Table './radius/radcheck' is marked as crashed and should be repaired
130410 9:50:54 [Warning] Checking table: './radius/radcheck'
130410 9:50:54 [ERROR] /usr/sbin/mysqld: Table './radius/radpostauth' is marked as crashed and should be repaired
130410 9:50:54 [Warning] Checking table: './radius/radpostauth'
130410 9:50:54 [ERROR] /usr/sbin/mysqld: Table './radius/resv' is marked as crashed and should be repaired
130410 9:50:54 [Warning] Checking table: './radius/resv'
130819 22:31:21 [Note] Plugin 'FEDERATED' is disabled.
130819 22:31:21 InnoDB: Initializing buffer pool, size = 8.0M
130819 22:31:21 InnoDB: Completed initialization of buffer pool
InnoDB: The log sequence number in ibdata files does not match
InnoDB: the log sequence number in the ib_logfiles!
130819 22:31:21 InnoDB: Database was not shut down normally!
InnoDB: Starting crash recovery.
InnoDB: Reading tablespace information from the .ibd files...
InnoDB: Restoring possible half-written data pages from the doublewrite
InnoDB: buffer...
Could anyone tell me, what could be wrong here?
Ugh... that's ugly.
Here's a fix. When uninstalling, copy the list of packages to be removed, then use that list to reinstall them afterwards.
http://www.blog.webcare.pk/2012/05/ubuntu-mysql-cannot-start-after-upgrade.html