I am trying to move the directories from $DIR1 to $DIR2 if $DIR2 does not have the same directory name
if [[ ! $(ls -d /$DIR2/* | grep test) ]] is what I currently have.
then
mv $DIR1/test* /$DIR2
fi
first it gives
ls: cannot access //data/lims/PROCESSING/*: No such file or directory
when $DIR2 is empty
however, it still works.
secondly
when i run the shell script twice.
it doesn't let me move the directories with the similar name.
for example
in $DIR1 i have test-1 test-2 test-3
when it runs for the first time all three directories moves to $DIR2
after that i do mkdir test-4 at $DIR1 and run the script again..
it does not let me move the test-4 because my loop thinks that test-4 is already there since I am grabbing all test
how can I go around and move test-4 ?
Firstly, you can check whether or not a directory exists using bash's built in 'True if directory exists' expression:
test="/some/path/maybe"
if [ -d "$test" ]; then
echo "$test is a directory"
fi
However, you want to test if something is not a directory. You've shown in your code that you already know how to negate the expression:
test="/some/path/maybe"
if [ ! -d "$test" ]; then
echo "$test is NOT a directory"
fi
You also seem to be using ls to get a list of files. Perhaps you want to loop over them and do something if the files are not a directory?
dir="/some/path/maybe"
for test in $(ls $dir);
do
if [ ! -d $test ]; then
echo "$test is NOT a directory."
fi
done
A good place to look for bash stuff like this is Machtelt Garrels' guide. His page on the various expressions you can use in if statements helped me a lot.
Moving directories from a source to a destination if they don't already exist in the destination:
For the sake of readability I'm going to refer to your DIR1 and DIR2 as src and dest. First, let's declare them:
src="/place/dir1/"
dest="/place/dir2/"
Note the trailing slashes. We'll append the names of folders to these paths so the trailing slashes make that simpler. You also seem to be limiting the directories you want to move by whether or not they have the word test in their name:
filter="test"
So, let's first loop through the directories in source that pass the filter; if they don't exist in dest let's move them there:
for dir in $(ls -d $src | grep $filter); do
if [ ! -d "$dest$dir" ]; then
mv "$src$dir" "$dest"
fi
done
I hope that solves your issue. But be warned, #gniourf_gniourf posted a link in the comments that should be heeded!
If you need to mv some directories to another according to some pattern, than you can use find:
find . -type d -name "test*" -exec mv -t /tmp/target {} +
Details:
-type d - will search only for directories
-name "" - set search pattern
-exec - do something with find results
-t, --target-directory=DIRECTORY move all SOURCE arguments into DIRECTORY
There are many examples of exec or xargs usage.
And if you do not want to overwrite files, than add -n option to mv command:
find . -type d -name "test*" -exec mv -n -t /tmp/target {} +
-n, --no-clobber do not overwrite an existing file
Related
I want to exclude some directory in my script (directory name >1000) for deletion and here is my directory look like:
/home/tester/100
/home/tester/1000
/home/tester/1020 # delete all files inside
/home/tester/2000 # delete all files inside
My bash script:
cd /home/tester
for dir in */ ; do
echo -n $dir": ";
find "$dir" -type f | wc -l;
if [ $dir -gt 1000 ]; then
cd $dir;
rm *;
cd ..;
fi
done
I got error on the if line and have no idea how to fix it ... Is it possible to do with bash script ?
Thank you for your help
for dir in */ ; do will set dir to things like "1000/" -- and the "/" makes it not a valid number. You can trim off the trailing "/" with ${dir%/}. I'd also recommend double-quoting it to prevent possible weird parsing:
if [ "${dir%/}" -gt 1000 ]; then
Note that if the directory name isn't a number (even after the "/" is removed), you'll get an error from the comparison, and the then clause won't run (which is probably what you want). If you want to handle other (non-numeric) directory names more gracefully, you should add some appropriate is-this-a-number test first.
Also, using cd in scripts tends to be problematic, because if a cd fails for any reason, the rest of the script will continue running, but in the wrong place. This can cause all sorts of chaos. Consider what'd happen if one of the cd $dir commands fails: it'd run rm * in the /home/tester directory, deleting all the non-subdirectory files there, then it'd cd .., leaving it in /home. The next iteration would try to cd down to something like 2000, which doesn't exist under /home, so that cd would fail too, and then it'd delete all files in /home. This repeats indefinitely, potentially all the way up to running rm * in /, the root directory. Not good at all.
I recommend either putting error checks on cd commands, or just avoiding them entirely in favor of using explicit paths to files.
#!/bin/bash
cd /home/tester || {
echo "Couldn't cd to /home/tester, quitting here..." >&2
exit 1
}
for dir in */ ; do
echo -n "$dir: "
find "$dir" -type f | wc -l
if [ "${dir%/}" -gt 1000 ]; then
rm "$dir"/* # Explicit path -- the / is redundant, but won't hurt
fi
done
I've also added an explicit shebang line, double-quoted all the variable references (good general scripting hygiene), and removed the semicolons from the ends of lines (not needed in shell syntax).
Another recommendation: run your scripts through shellcheck.net -- it'll point out a lot of common mistakes like unquoted variable references and unchecked cds.
The value of $dir is not numeric. Add set -x at the to of your script to debug.
Use "$(basename "$dir")" to get the numeric value.
When I did not have my first cup of coffee, I would do
for dir in */ ; do
echo -n $dir": ";
find "$dir" -type f | wc -l;
done
mv /home/tester/1000 /home/tester/some_unique_name
rm /home/tester/[1-9][0-9][0-9][0-9]/*
mv /home/tester/some_unique_name /home/tester/1000
This will not work when you have directories > 9999.
Perhaps rm /home/tester/[1-9][0-9][0-9][0-9]*/* will work, when you don't have directories like 1000backup or 2000my_unique_name.
A better solution is
find . -regextype sed -regex '/home/tester/[0-9]\{4,\}' ! -name 1000 |
xargs -L1 -I{} echo rm {}/*
I'm stuck looking for a one-liner to add a prefix to all subfolder names and file names in a directory
eg "AAA" in the examples below
/folder/AAAfile.txt
/folder/AAAread/AAAdoc.txt
/folder/AAAread/AAAfinished/AAAread.txt
I've tried using xargs and find, but can't get them to go recursively through the subdirectories and their contents. Any suggestions?
James
You could use something like that
find . -mindepth 1 | sort -r | xargs -l -I {} bash -c 'mv $1 ${1%/*}/AAA${1##*/}' _ {}
Tested with your folder structure, executed from the root (same as AAAfile.txt).
The following script should meet your need (ran it from inside your folder directory):
for i in `ls -R`;do
dname=`dirname $i`
fname=AAA`basename $i`
if [ -f $i ]
then
mv $i $dname/$fname
fi
#this could be merged with previous condition but have been kept just to avoid invalid directory warning
if [ -d $i ]
then
mv $i $dname/$fname
fi
done
I'm using freeradius with daloradius appliance.
Now there are lots of routers connected to this radius server and the database and log files are growing too much.
The log files from freeradius are saved on:
/radacct/xxx.xxx.xxx.xxx/detail-20150404
xxx.xxx.xxx.xxx are differents IP clients, so there are lots of folders and lots of files inside these folders.
I can add this directory to rotate log because the file detail-TODAY can't be modified during the day and can be accessible all the 24h.
So I'm asking for:
A script to move /radacct/xxx.xxx.xxx.xxx/detail-yyyymmdd to a new folder /radacct_old/xxx.xxx.xxx.xxx/detail-yyyymmdd.
We have to move all files except where yyyymmdd is the current date (date when the script is executed).
After this I can rotate log radacct_old or just add to zip radacct_old_yyyymmdd.
I'm planning to do this job every week or so.
What’s the best way do you suggest?
Try something like this:
function move {
today=$(date +%Y%m%d)
file="${1#/radacct/}"
ip="${file%%/*}"
name="${file##*/}"
if [[ ! $name =~ detail-$today ]]; then
dir="/radacct_old/$ip"
[ -d "${dir}" ] || mkdir "${dir}"
mv "${1}" "${dir}/${name}"
fi
}
export -f move
find /radacct -type d -mindepth 2 -maxdepth 2 -name '*detail*' -exec bash -c 'move "$0"' {} \;
Beware this is untested, you will certainly be able to fill the gaps. I will test it out and debug later if you can't seem to make it work. Post when you have further questions.
Explanation: generally the script looks for all directories of the required format and moves them (last two lines) by calling a function (beginning).
Move function
today=$(date +%Y%m%d) constructs the date in the required format.
file="${1#/radacct/}" remove leading directory name from the directory we found using find.
ip="${file%%/*}" extract the ip address.
name="${file##*/}" extract the dir name.
if [[ ! $name =~ detail-$today ]]; then if dir name is from today.
dir="/radacct_old/$ip" construct target directory.
[ -d "${dir}" ] || mkdir "${dir}" create it if it doesn't exist.
mv "${1}" "${dir}/${name}" move the dir to the new location.
export -f move export the function so it can be called in subshell
Find function
find /radacct look in /radacct dir
-type d -mindepth 2 -maxdepth 2 look for dirs in dirs.
-name '*detail*' which contain the word detail.
-exec bash -c 'move "$0"' {} \; and execute the move function, supplying the name of the dir as argument.
Note that I will add more details and test it later today.
To perform this weekly, use a cron job.
I need a Bash Script to Execute a program for all directories that do not have a specific file and create the output file on the same directory.This program needs an input file which exist in every directory with the name *.DNA.fasta.Suppose I have the following directories that may contain sub directories also
dir1/a.protein.fasta
dir2/b.protein.fasta
dir3/anyfile
dir4/x.orf.fasta
I have started by finding the directories that don't have that specific file whic name is *.protein.fasta
in this case I want the dir3 and dir4 to be listed (since they do not contain *.protein.fasta)
I have tried this code:
find . -maxdepth 1 -type d \! -exec test -e '{}/*protein.fasta' \; -print
but it seems I missed some thing it does not work.
also I do not know how to proceed for the whole story.
This is a tricky one.
I can't think of a good solution. But here's a solution, nevertheless. Note that this is guaranteed not to work if your directory or file names contain newlines, and it's not guaranteed to work if they contain other special characters. (I've only tested with the samples in your question.)
Also, I haven't included a -maxdepth because you said you need to search subdirectories too.
#!/bin/bash
# Create an associative array
declare -A excludes
# Build an associative array of directories containing the file
while read line; do
excludes[$(dirname "$line")]=1
echo "excluded: $(dirname "$line")" >&2
done <<EOT
$(find . -name "*protein.fasta" -print)
EOT
# Walk through all directories, print only those not in array
find . -type d \
| while read line ; do
if [[ ! ${excludes[$line]} ]]; then
echo "$line"
fi
done
For me, this returns:
.
./dir3
./dir4
All of which are directories that do not contain a file matching *.protein.fasta. Of course, you can replace the last echo "$line" with whatever you need to do with these directories.
Alternately:
If what you're really looking for is just the list of top-level directories that do not contain the matching file in any subdirectory, the following bash one-liner may be sufficient:
for i in *; do test -d "$i" && ( find "$i" -name '*protein.fasta' | grep -q . || echo "$i" ); done
#!/bin/bash
for dir in *; do
test -d "$dir" && ( find "$dir" -name '*protein.fasta' | grep -q . || Programfoo"$dir/$dir.DNA.fasta");
done
I'm trying to move media and other files which are in a specified directory to another directory and create another one if it does not exits (where the files will go), and create a directory the remaining files with different extensions will go. My first problem is that my script is not making a new directory and it is not moving the files to other directories and what code can I use to move files with different extensions to one directory?
This is what i have had so far, correct me where I'm wrong and help modify my script:
#!/bin/bash
From=/home/katy/doc
To=/home/katy/mo #directory where the media files will go
WA=/home/katy/do # directory where the other files will go
if [ ! -d "$To" ]; then
mkdir -p "$To"
fi
cd $From
find path -type f -name"*.mp4" -exec mv {} $To \;
I'd solve it somewhat like this:
#!/bin/bash
From=/home/katy/doc
To=/home/katy/mo # directory where the media files will go
WA=/home/katy/do # directory where the other files will go
cd "$From"
find . -type f \
| while read file; do
dir="$(dirname "$file")"
base="$(basename "$file")"
if [[ "$file" =~ \.mp4$ ]]; then
target="$To"
else
target="$WA"
fi
mkdir -p "$target/$dir"
mv -i "$file" "$target/$dir/$base"
done
Notes:
mkdir -p will not complain if the directory already exists, so there's no need to check for that.
Put double quotes around all filenames in case they contain spaces.
By piping the output of find into a while loop, you also avoid getting bitten by spaces, because read will read until a newline.
You can modify the regex according to taste, e.g. \.(mp3|mp4|wma|ogg)$.
In case you didn't know, $(...) will run the given command and stick its output back in the place of the $(...) (called command substitution). It is almost the same as `...` but slightly better (details).
In order to test it, put echo in front of mv. (Note that quotes will disappear in the output.)
cd $From
find . -type f -name "*.mp4" -exec mv {} $To \;
^^^
or
find $From -type f -name "*.mp4" -exec mv {} $To \;
^^^^^
cd $From
mv *.mp4 $To;
mv * $WA;