Spark-Submit exception SparkException: Job aborted due to stage failure - apache-spark

Whenever I tried to run a spark-submit command like the one below I'm getting an exception. Please could someone suggest what's going wrong here.
My command:
spark-submit --class com.xyz.MyTestClass --master spark://<spark-master-IP>:7077 SparkTest.jar
Exception in thread "main" org.apache.spark.SparkException: Job aborted due to stage failure: Task 0.0:0 failed 4 times, most recent failure: TID 7 on host <hostname> failed for unknown reason
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1033)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1017)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1015)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1015)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:633)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:633)
at scala.Option.foreach(Option.scala:236)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:633)
at org.apache.spark.scheduler.DAGSchedulerEventProcessActor$$anonfun$receive$2.applyOrElse(DAGScheduler.scala:1207)
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:498)
at akka.actor.ActorCell.invoke(ActorCell.scala:456)
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:237)
at akka.dispatch.Mailbox.run(Mailbox.scala:219)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:386)
at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

I am not sure if the parameter
--master spark://<spark-master-IP>:7077
is what you actually have written instead of the actual IP of the master node. If so, you should change it and type the IP or public DNS of the master, such as:
--master spark://ec2-XX-XX-XX-XX.eu-west-1.compute.amazonaws.com:7077
If that's not the case, I would appreciate if you could provide more information about the error of the application, just as pointed on the comments above. Also make sure that the --class parameter points to the actual main class of the application.

Related

spark submit with phoenix

I'm Trying to connect to phoenix using spark submit on secured cluster I have this Exception
ConnectionQueryServicesImpl: Trying to connect to a secure cluster
with keytab:/hbase-secure 17/06/29 11:54:44 ERROR Executor: Exception
in task 0.0 in stage 0.0 (TID 0) java.sql.SQLException: ERROR 103
(08004): Unable to establish connection.
On my program I want to save to phoenix a dataframe (the program part that generate the exception) I already compiled and saved to phoenix from my intelliji but it's not working from spark submit even with master local
this is the part of code that generate the exception
df.write
.format("org.apache.phoenix.spark")
.mode("overwrite")
.option("table", output)
.option("zkUrl", "sv005689.info.ratp:2181")
.save()
this my spark submit command
spark-submit --class TEST.PHOENIX --master local --executor-memory 10G --num-executors 50 --conf spark.ui.port=14040 spark-assembly-0.0.2.jar
this is my exception
17/06/29 11:54:43 INFO ConnectionQueryServicesImpl: Trying to connect to a secure cluster with keytab:/hbase-secure
17/06/29 11:54:44 ERROR Executor: Exception in task 0.0 in stage 0.0 (TID 0)
java.sql.SQLException: ERROR 103 (08004): Unable to establish connection.
at org.apache.phoenix.exception.SQLExceptionCode$Factory$1.newException(SQLExceptionCode.java:422)
at org.apache.phoenix.exception.SQLExceptionInfo.buildException(SQLExceptionInfo.java:145)
at org.apache.phoenix.query.ConnectionQueryServicesImpl.openConnection(ConnectionQueryServicesImpl.java:392)
at org.apache.phoenix.query.ConnectionQueryServicesImpl.access$300(ConnectionQueryServicesImpl.java:211)
at org.apache.phoenix.query.ConnectionQueryServicesImpl$13.call(ConnectionQueryServicesImpl.java:2269)
at org.apache.phoenix.query.ConnectionQueryServicesImpl$13.call(ConnectionQueryServicesImpl.java:2248)
at org.apache.phoenix.util.PhoenixContextExecutor.call(PhoenixContextExecutor.java:78)
at org.apache.phoenix.query.ConnectionQueryServicesImpl.init(ConnectionQueryServicesImpl.java:2248)
at org.apache.phoenix.jdbc.PhoenixDriver.getConnectionQueryServices(PhoenixDriver.java:233)
at org.apache.phoenix.jdbc.PhoenixEmbeddedDriver.createConnection(PhoenixEmbeddedDriver.java:135)
at org.apache.phoenix.jdbc.PhoenixDriver.connect(PhoenixDriver.java:202)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:208)
at org.apache.phoenix.mapreduce.util.ConnectionUtil.getConnection(ConnectionUtil.java:98)
at org.apache.phoenix.mapreduce.util.ConnectionUtil.getOutputConnection(ConnectionUtil.java:82)
at org.apache.phoenix.mapreduce.util.ConnectionUtil.getOutputConnection(ConnectionUtil.java:70)
at org.apache.phoenix.mapreduce.util.PhoenixConfigurationUtil.getUpsertColumnMetadataList(PhoenixConfigurationUtil.java:230)
at org.apache.phoenix.spark.DataFrameFunctions$$anonfun$2.apply(DataFrameFunctions.scala:45)
at org.apache.phoenix.spark.DataFrameFunctions$$anonfun$2.apply(DataFrameFunctions.scala:41)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitions$1$$anonfun$apply$22.apply(RDD.scala:717)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitions$1$$anonfun$apply$22.apply(RDD.scala:717)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:313)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:277)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
at org.apache.spark.scheduler.Task.run(Task.scala:89)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:227)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.io.IOException: Login failure for 2181 from keytab /hbase-secure: javax.security.auth.login.LoginException: Unable to obtain password from user
at org.apache.hadoop.security.UserGroupInformation.loginUserFromKeytab(UserGroupInformation.java:987)
at org.apache.hadoop.security.SecurityUtil.login(SecurityUtil.java:280)
at org.apache.hadoop.hbase.security.User$SecureHadoopUser.login(User.java:386)
at org.apache.hadoop.hbase.security.User.login(User.java:253)
at org.apache.phoenix.query.ConnectionQueryServicesImpl.openConnection(ConnectionQueryServicesImpl.java:380)
... 27 more
Caused by: javax.security.auth.login.LoginException: Unable to obtain password from user
at com.sun.security.auth.module.Krb5LoginModule.promptForPass(Krb5LoginModule.java:897)
at com.sun.security.auth.module.Krb5LoginModule.attemptAuthentication(Krb5LoginModule.java:760)
at com.sun.security.auth.module.Krb5LoginModule.login(Krb5LoginModule.java:617)
Can someone help me to resolve this issue
thank you for your help

Spark YARN client on Windows 7 issue

I am trying to execute
spark-submit --master yarn-client
on windows 7 client machine for CDH 5.4.5. cluster.
I downloaded spark 1.5. assembly from spark.apache.org.
Then downloaded yarn-config from cloudera manager running on cluster, and wrote its path to env variable YARN_CONF on client.
Yarn application worked correctly, but client gets the exception
15/10/16 10:54:59 WARN net.ScriptBasedMapping: Exception running /etc/hadoop/conf.cloudera.yarn/topology.py 10.20.52.104
java.io.IOException: Cannot run program "/etc/hadoop/conf.cloudera.yarn/topology.py" (in directory "C:\workspace\development\"): CreateProcess error=2, ═х єфрхЄё  эрщЄш єърчрээ√щ Їрщы
at java.lang.ProcessBuilder.start(ProcessBuilder.java:1048)
at org.apache.hadoop.util.Shell.runCommand(Shell.java:482)
at org.apache.hadoop.util.Shell.run(Shell.java:455)
at org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:715)
at org.apache.hadoop.net.ScriptBasedMapping$RawScriptBasedMapping.runResolveCommand(ScriptBasedMapping.java:251)
at org.apache.hadoop.net.ScriptBasedMapping$RawScriptBasedMapping.resolve(ScriptBasedMapping.java:188)
at org.apache.hadoop.net.CachedDNSToSwitchMapping.resolve(CachedDNSToSwitchMapping.java:119)
at org.apache.hadoop.yarn.util.RackResolver.coreResolve(RackResolver.java:101)
at org.apache.hadoop.yarn.util.RackResolver.resolve(RackResolver.java:81)
at org.apache.spark.scheduler.cluster.YarnScheduler.getRackForHost(YarnScheduler.scala:38)
at org.apache.spark.scheduler.TaskSchedulerImpl$$anonfun$resourceOffers$1.apply(TaskSchedulerImpl.scala:270)
at org.apache.spark.scheduler.TaskSchedulerImpl$$anonfun$resourceOffers$1.apply(TaskSchedulerImpl.scala:262)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
at org.apache.spark.scheduler.TaskSchedulerImpl.resourceOffers(TaskSchedulerImpl.scala:262)
at org.apache.spark.scheduler.cluster.CoarseGrainedSchedulerBackend$DriverEndpoint.makeOffers(CoarseGrainedSchedulerBackend.scala:167)
at org.apache.spark.scheduler.cluster.CoarseGrainedSchedulerBackend$DriverEndpoint$$anonfun$receive$1.applyOrElse(CoarseGrainedSchedulerBackend.scala:106)
at org.apache.spark.rpc.akka.AkkaRpcEnv.org$apache$spark$rpc$akka$AkkaRpcEnv$$processMessage(AkkaRpcEnv.scala:178)
at org.apache.spark.rpc.akka.AkkaRpcEnv$$anonfun$actorRef$lzycompute$1$1$$anon$1$$anonfun$receiveWithLogging$1$$anonfun$applyOrElse$4.apply$mcV$sp(AkkaR
pcEnv.scala:127)
at org.apache.spark.rpc.akka.AkkaRpcEnv.org$apache$spark$rpc$akka$AkkaRpcEnv$$safelyCall(AkkaRpcEnv.scala:198)
at org.apache.spark.rpc.akka.AkkaRpcEnv$$anonfun$actorRef$lzycompute$1$1$$anon$1$$anonfun$receiveWithLogging$1.applyOrElse(AkkaRpcEnv.scala:126)
at scala.runtime.AbstractPartialFunction$mcVL$sp.apply$mcVL$sp(AbstractPartialFunction.scala:33)
at scala.runtime.AbstractPartialFunction$mcVL$sp.apply(AbstractPartialFunction.scala:33)
at scala.runtime.AbstractPartialFunction$mcVL$sp.apply(AbstractPartialFunction.scala:25)
at org.apache.spark.util.ActorLogReceive$$anon$1.apply(ActorLogReceive.scala:59)
at org.apache.spark.util.ActorLogReceive$$anon$1.apply(ActorLogReceive.scala:42)
at scala.PartialFunction$class.applyOrElse(PartialFunction.scala:118)
at org.apache.spark.util.ActorLogReceive$$anon$1.applyOrElse(ActorLogReceive.scala:42)
at akka.actor.Actor$class.aroundReceive(Actor.scala:465)
at org.apache.spark.rpc.akka.AkkaRpcEnv$$anonfun$actorRef$lzycompute$1$1$$anon$1.aroundReceive(AkkaRpcEnv.scala:93)
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:516)
at akka.actor.ActorCell.invoke(ActorCell.scala:487)
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:238)
at akka.dispatch.Mailbox.run(Mailbox.scala:220)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:393)
at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
Caused by: java.io.IOException: CreateProcess error=2, ═х єфрхЄё  эрщЄш єърчрээ√щ Їрщы
at java.lang.ProcessImpl.create(Native Method)
at java.lang.ProcessImpl.<init>(ProcessImpl.java:386)
at java.lang.ProcessImpl.start(ProcessImpl.java:137)
at java.lang.ProcessBuilder.start(ProcessBuilder.java:1029)
... 38 more
Then I modified client configuration of yarn site.xml param "net.topology.script.file.name" to correct path and now client get the exception
15/10/16 10:48:57 WARN net.ScriptBasedMapping: Exception running C:\packages\hadoop-client\yarn-conf\topology.py 10.20.52.105
java.io.IOException: Cannot run program "C:\packages\hadoop-client\yarn-conf\topology.py" (in directory "C:\workspace\development\"): CreateProcess error=193, %1 эх  ты хЄё  яЁшыюцхэшхь Win32
at java.lang.ProcessBuilder.start(ProcessBuilder.java:1048)
at org.apache.hadoop.util.Shell.runCommand(Shell.java:482)
at org.apache.hadoop.util.Shell.run(Shell.java:455)
at org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:715)
at org.apache.hadoop.net.ScriptBasedMapping$RawScriptBasedMapping.runResolveCommand(ScriptBasedMapping.java:251)
at org.apache.hadoop.net.ScriptBasedMapping$RawScriptBasedMapping.resolve(ScriptBasedMapping.java:188)
at org.apache.hadoop.net.CachedDNSToSwitchMapping.resolve(CachedDNSToSwitchMapping.java:119)
at org.apache.hadoop.yarn.util.RackResolver.coreResolve(RackResolver.java:101)
at org.apache.hadoop.yarn.util.RackResolver.resolve(RackResolver.java:81)
at org.apache.spark.scheduler.cluster.YarnScheduler.getRackForHost(YarnScheduler.scala:38)
at org.apache.spark.scheduler.TaskSetManager$$anonfun$org$apache$spark$scheduler$TaskSetManager$$addPendingTask$1.apply(TaskSetManager.scala:213)
at org.apache.spark.scheduler.TaskSetManager$$anonfun$org$apache$spark$scheduler$TaskSetManager$$addPendingTask$1.apply(TaskSetManager.scala:192)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
at org.apache.spark.scheduler.TaskSetManager.org$apache$spark$scheduler$TaskSetManager$$addPendingTask(TaskSetManager.scala:192)
at org.apache.spark.scheduler.TaskSetManager$$anonfun$1.apply$mcVI$sp(TaskSetManager.scala:161)
at scala.collection.immutable.Range.foreach$mVc$sp(Range.scala:141)
As I understood, spark can't invoke topology.py script correctly using python.exe on windows, but how to fix it?
Just a comment "net.topology.script.file.name" yarn param in site.xml.
I had the exact same problem as above on HortonWorks HDP2.4 when trying to access it with an iPython notebook with Spark. I solved it with the proposal from #mikhail-kramer above.
On the Windows client, I had to comment out the value of the net.topology.script.name variable in file core-site.xml that I had downloaded using Ambari. The commented out value now looks like this:
<property>
<name>net.topology.script.file.name</name>
<value><!--/etc/hadoop/conf/topology_script.py--></value>
</property>
I hope that this may help the next person who has the same problem in the future.

Exception running /etc/hadoop/conf.cloudera.yarn/topology.py

Any time I try to run a Spark application on a Cloudera CDH 5.4.4 cluster, Yarn client mode, I get the following exception (repeated many times in the stack trace). The process continue anyway (it is a warning), but it is imposible to find something in the logs. How can I solve it?
15/09/01 08:53:58 WARN net.ScriptBasedMapping: Exception running /etc/hadoop/conf.cloudera.yarn/topology.py 10.0.0.5
java.io.IOException: Cannot run program "/etc/hadoop/conf.cloudera.yarn/topology.py" (in directory "/home/azureuser/scripts/streaming"): error=13, Permission denied
at java.lang.ProcessBuilder.start(ProcessBuilder.java:1047)
at org.apache.hadoop.util.Shell.runCommand(Shell.java:485)
at org.apache.hadoop.util.Shell.run(Shell.java:455)
at org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:715)
at org.apache.hadoop.net.ScriptBasedMapping$RawScriptBasedMapping.runResolveCommand(ScriptBasedMapping.java:251)
at org.apache.hadoop.net.ScriptBasedMapping$RawScriptBasedMapping.resolve(ScriptBasedMapping.java:188)
at org.apache.hadoop.net.CachedDNSToSwitchMapping.resolve(CachedDNSToSwitchMapping.java:119)
at org.apache.hadoop.yarn.util.RackResolver.coreResolve(RackResolver.java:101)
at org.apache.hadoop.yarn.util.RackResolver.resolve(RackResolver.java:81)
at org.apache.spark.scheduler.cluster.YarnScheduler.getRackForHost(YarnScheduler.scala:38)
at org.apache.spark.scheduler.TaskSchedulerImpl$$anonfun$resourceOffers$1.apply(TaskSchedulerImpl.scala:271)
at org.apache.spark.scheduler.TaskSchedulerImpl$$anonfun$resourceOffers$1.apply(TaskSchedulerImpl.scala:263)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
at org.apache.spark.scheduler.TaskSchedulerImpl.resourceOffers(TaskSchedulerImpl.scala:263)
at org.apache.spark.scheduler.cluster.CoarseGrainedSchedulerBackend$DriverActor.makeOffers(CoarseGrainedSchedulerBackend.scala:167)
at org.apache.spark.scheduler.cluster.CoarseGrainedSchedulerBackend$DriverActor$$anonfun$receiveWithLogging$1.applyOrElse(CoarseGrainedSchedulerBackend.scala:131)
at scala.runtime.AbstractPartialFunction$mcVL$sp.apply$mcVL$sp(AbstractPartialFunction.scala:33)
at scala.runtime.AbstractPartialFunction$mcVL$sp.apply(AbstractPartialFunction.scala:33)
at scala.runtime.AbstractPartialFunction$mcVL$sp.apply(AbstractPartialFunction.scala:25)
at org.apache.spark.util.ActorLogReceive$$anon$1.apply(ActorLogReceive.scala:53)
at org.apache.spark.util.ActorLogReceive$$anon$1.apply(ActorLogReceive.scala:42)
at scala.PartialFunction$class.applyOrElse(PartialFunction.scala:118)
at org.apache.spark.util.ActorLogReceive$$anon$1.applyOrElse(ActorLogReceive.scala:42)
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:498)
at akka.actor.ActorCell.invoke(ActorCell.scala:456)
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:237)
at akka.dispatch.Mailbox.run(Mailbox.scala:219)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:386)
at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
Caused by: java.io.IOException: error=13, Permission denied
at java.lang.UNIXProcess.forkAndExec(Native Method)
at java.lang.UNIXProcess.<init>(UNIXProcess.java:186)
at java.lang.ProcessImpl.start(ProcessImpl.java:130)
at java.lang.ProcessBuilder.start(ProcessBuilder.java:1028)
... 32 more
Faced the same problem while submitting a Spark job.
Most probably you don't have the "/etc/hadoop/conf.cloudera.yarn/topology.py" file on the server you ran the Spark application. Or "/etc/hadoop/conf.cloudera.yarn/topology.py" is not available on one or more servers.
You can also resolve this problem by running the application in yarn cluster mode.
--master yarn-cluster
chmod 755 /etc/hadoop/conf.cloudera.yarn/topology.py
Found a solution here: https://groups.google.com/a/cloudera.org/forum/#!searchin/cdh-user/Exception$20running$20$2Fetc$2Fhadoop$2Fconf.cloudera.yarn$2Ftopology.py/cdh-user/fte4IPjX8TU/0jUOGkXyCAAJ
Just add permissions to the user that launches the script on all the directories that form the path of the script (for reading and listing files).
I face the same issue. you can scp /etc/hadoop/conf.cloudera.yarn Username#Host:/etc/hadoop
in the others datanode in your clusters to your submit-shell computer and notices the permissions. Hoping it's fine for you.

Submit Spark Job to Google Cloud Platform

Has everyone tries deploy Spark using https://console.developers.google.com/project/_/mc/template/hadoop?
Spark installed correctly for me, I can SSH into the hadoop worker or master, spark is installed at /home/hadoop/spark-install/
I can use spark python shell to read file at cloud storage
lines = sc.textFile("hello.txt")
lines.count()
line.first()
but I cannot sucessfully submit the python example to spark cluster, when I run
bin/spark-submit --master spark://hadoop-m-XXX:7077 examples/src/main/python/pi.py 10
I always got
Traceback (most recent call last): File
"/Users/yuanwang/programming/spark-1.1.0-bin-hadoop2.4/examples/src/main/python/pi.py",
line 38, in
count = sc.parallelize(xrange(1, n+1), slices).map(f).reduce(add) File
"/Users/yuanwang/programming/spark-1.1.0-bin-hadoop2.4/python/pyspark/rdd.py",
line 759, in reduce
vals = self.mapPartitions(func).collect() File "/Users/yuanwang/programming/spark-1.1.0-bin-hadoop2.4/python/pyspark/rdd.py",
line 723, in collect
bytesInJava = self._jrdd.collect().iterator() File "/Users/yuanwang/programming/spark-1.1.0-bin-hadoop2.4/python/lib/py4j-0.8.2.1-src.zip/py4j/java_gateway.py",
line 538, in call File
"/Users/yuanwang/programming/spark-1.1.0-bin-hadoop2.4/python/lib/py4j-0.8.2.1-src.zip/py4j/protocol.py", line 300, in get_return_value py4j.protocol.Py4JJavaError: An error
occurred while calling o26.collect. : org.apache.spark.SparkException:
Job aborted due to stage failure: All masters are unresponsive! Giving
up. at
org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1185)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1174)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1173)
at
scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
at
org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1173)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:688)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:688)
at scala.Option.foreach(Option.scala:236) at
org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:688)
at
org.apache.spark.scheduler.DAGSchedulerEventProcessActor$$anonfun$receive$2.applyOrElse(DAGScheduler.scala:1391)
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:498) at
akka.actor.ActorCell.invoke(ActorCell.scala:456) at
akka.dispatch.Mailbox.processMailbox(Mailbox.scala:237) at
akka.dispatch.Mailbox.run(Mailbox.scala:219) at
akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:386)
at
scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at
scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at
scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at
scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
I am pretty sure I am not connect to Spark cluster correctly, has anyone successfully connect spark cluster on cloud engine?
You can run jobs from the master:
ssh to the master node:
gcloud compute ssh --zone <zone> hadoop-m-<hash>
and then:
$ cd /home/hadoop/spark-install
$ spark-submit examples/src/main/python/pi.py 10
and somewhere in the output you should see: something like:
Pi is roughly 3.140100
It looks like you are trying to do remote submission of jobs. I'm not sure how you get that to work, but you can submit jobs from on the master.
BTW, as a routine operation, you can validate your spark installation with:
cd /usr/local/share/google/bdutil-0.35.2/extensions/spark
sudo chmod 755 spark-validate-setup.sh
./spark-validate-setup.sh

SparkException: Job aborted due to stage failure

I am fetching the data from HDFS using spark-submit and doing some processing on the fetched data and again trying to write the processed data into HDFS using spark, but getting below exception. I can see that data is getting fetched from HDFS using spark FlatMapFunction and getting the JavaRDDs, but failing with below exception soon after the data is fetched. Below is the command i used to submit the spark job:
spark-submit --class com.xyz.MainClass --master spark://full-hostname-ofspark-master:7077 MyProject.jar
Exception in thread "main" org.apache.spark.SparkException: Job aborted due to stage failure: Master removed our application: FAILED
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1033)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1017)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1015)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1015)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:633)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:633)
at scala.Option.foreach(Option.scala:236)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:633)
at org.apache.spark.scheduler.DAGSchedulerEventProcessActor$$anonfun$receive$2.applyOrElse(DAGScheduler.scala:1207)
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:498)
at akka.actor.ActorCell.invoke(ActorCell.scala:456)
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:237)
at akka.dispatch.Mailbox.run(Mailbox.scala:219)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:386)
at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

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