How to prevent compiler & linker from taking over entire machine? - linux

When I compile a large project the compiler slows down the machine tremendously, virtually freezes it out. If I'm lucky a keystroke in vim takes a few seconds to register. If I'm not I may as well go for a walk since nothing can be done on my workstation at all.
Is there any way to prevent compiler and linker from consuming the entire machine? More generally, is it possible to limit a family of processes to a portion of computing resources, such as threads, memory, disk access bandwidth?
Something like limiting the resources available to the process tree that originates from the shell that runs the build would be ideal.

Most linux distros have a package called cpulimit. You can use this to limit the CPU usage for the gcc tool chain binaries.
It's mention as an answer to this question.
Limiting certain processes to CPU % - Linux

I'm not an expert about it but you could try starting the compilation with a specific cgroup that has limited resources. I don't know exactly how complicated it is to do it but it shouldn't be too hard.
You could also try changing the nice of the process to give it a lower priority so that it does take the entire machine but will be easily bumped by another process.

Related

Is there a way to disable CPU cache (L1/L2) on a Linux system?

I am profiling some code on a Linux system (running on Intel Core i7 4500U) to obtain the time of ONLY the execution costs. The application is the demo mpeg2dec from libmpeg2. I am trying to obtain a probability distribution for the mpeg2 execution times. However we want to see the raw execution cost when cache is switched off.
Is there a way I can disable the cpu cache of my system via a Linux command, or via a gcc flag ? or even set the cpu (L1/L2) cache size to 0KB ? or even add some code changed to disable cache ? Of course, without modifying or rebuilding the kernel.
See this 2012 thread, someone posted a tiny kernel module source to disable cache through asm.
http://www.linuxquestions.org/questions/linux-kernel-70/disabling-cpu-caches-936077/
If disabling the cache is really necessary, then so be it.
Otherwise, to know how much time a process takes in terms of user or system "cycles", then I would recommend the getrusage() function.
struct rusage usage;
getrusage(RUSAGE_SELF, &usage);
You can call it before/after your loop/test and subtracted the values to get a good idea of how much time your process took, even if many other processes run in parallel on the same machine. The main problem you'd get is if your process start swapping. In that case your timings will be off.
double user_usage = usage.ru_utime.tv_sec + usage.ru_utime.tv_usec / 1000000.0;
double system_uage = usage.ru_stime.tv_sec + usage.ru_stime.tv_usec / 1000000.0;
This is really precise from my own experience. To increase precision, you could be root when running your test and give it a negative priority (-1 or -2 is enough.) Then it won't be swapped out until you call a function that may require it.
Of course, you still get the effect of the cache... assuming you do not handle very large amount of data with code that goes on and on (opposed to having a loop).

Limiting the memory usage of a program in Linux

I'm new to Linux and Terminal (or whatever kind of command prompt it uses), and I want to control the amount of RAM a process can use. I already looked for hours to find an easy-t-use guide. I have a few requirements for limiting it:
Multiple instances of the program will be running, but I only want to limit some of the instances.
I do not want the process to crash once it exceeds the limit. I want it to use HDD page swap.
The program will run under WINE, and is a .exe.
So can somebody please help with the command to limit the RAM usage on a process in Linux?
The fact that you’re using Wine makes no difference in this particular context, which leaves requirements 1 and 2. Requirement 2 –
I do not want the process to crash once it exceeds the limit. I want it to use HDD page swap.
– is known as limiting the resident set size or rss of the process, and it’s actually rather nontrivial to do on Linux, as is demonstrated by a question asked in 2010. You’ll need to set up Linux control groups (cgroups). Fortunately, Justin L.’s answer gives a brief rundown on how to do so. Note that
instead of jlebar, you should use your own Unix user name, and
instead of your/program, you should use wine /path/to/Windows/program.exe.
Using cgroups will also satisfy your other requirements – you can start as many instances of the program as you wish, but only those which you start with cgexec -g memory:limited will be limited.

Accurate way of measuring overhead in kernel space

I recently implemented a security mechanism for Linux which hooks into system calls. Now I have to measure the overhead caused by it. The project requires to compare the execution time of typical Linux apps with and without the mechanism. By typical Linux apps I assume ex. gzipping 1G file, doing 'find /', grepping files. The main goal is to show the overhead in different types of tasks: CPU bound, I/O bound etc.
The question is: how to organise the test so that they will be reliable? The first important thing is the fact that my mechanism works only in kernel space, so it is relevant to compare systime. I can use 'time' command for it, but is it the most accurate way of measuring systime? Another idea is to run those apps in long loops to minimize error. Then the loops should be inside or outside time command? If they are outside I will get many results - should I choose min, max, median, average?
Thanks for any suggestions.
I think you want more to measure a typical application payload (as Ninjajl's comment suggests, the compilation of the kernel could be a good payload). You probably don't want to measure the overhead inside each syscall itself, or even inside the kernel as a whole.
The reason for this is that most applications spend much more time and resource in user-space than in kernel-land (i.e. syscalls), so overhead inside syscalls is a "second-order" effect and probably don't matter as much. Of course, there are probable exceptions.
Perhaps phoronix test suite might be relevant.
You might be interested by oprofile
See also this answer and this question

How to "hibernate" a process in Linux by storing its memory to disk and restoring it later?

Is it possible to 'hibernate' a process in linux?
Just like 'hibernate' in laptop, I would to write all the memory used by a process to disk, free up the RAM. And then later on, I can 'resume the process', i.e, reading all the data from memory and put it back to RAM and I can continue with my process?
I used to maintain CryoPID, which is a program that does exactly what you are talking about. It writes the contents of a program's address space, VDSO, file descriptor references and states to a file that can later be reconstructed. CryoPID started when there were no usable hooks in Linux itself and worked entirely from userspace (actually, it still does work, depending on your distro / kernel / security settings).
Problems were (indeed) sockets, pending RT signals, numerous X11 issues, the glibc caching getpid() implementation amongst many others. Randomization (especially VDSO) turned out to be insurmountable for the few of us working on it after Bernard walked away from it. However, it was fun and became the topic of several masters thesis.
If you are just contemplating a program that can save its running state and re-start directly into that state, its far .. far .. easier to just save that information from within the program itself, perhaps when servicing a signal.
I'd like to put a status update here, as of 2014.
The accepted answer suggests CryoPID as a tool to perform Checkpoint/Restore, but I found the project to be unmantained and impossible to compile with recent kernels.
Now, I found two actively mantained projects providing the application checkpointing feature.
The first, the one I suggest 'cause I have better luck running it, is CRIU
that performs checkpoint/restore mainly in userspace, and requires the kernel option CONFIG_CHECKPOINT_RESTORE enabled to work.
Checkpoint/Restore In Userspace, or CRIU (pronounced kree-oo, IPA: /krɪʊ/, Russian: криу), is a software tool for Linux operating system. Using this tool, you can freeze a running application (or part of it) and checkpoint it to a hard drive as a collection of files. You can then use the files to restore and run the application from the point it was frozen at. The distinctive feature of the CRIU project is that it is mainly implemented in user space.
The latter is DMTCP; quoting from their main page:
DMTCP (Distributed MultiThreaded Checkpointing) is a tool to transparently checkpoint the state of multiple simultaneous applications, including multi-threaded and distributed applications. It operates directly on the user binary executable, without any Linux kernel modules or other kernel modifications.
There is also a nice Wikipedia page on the argument: Application_checkpointing
The answers mentioning ctrl-z are really talking about stopping the process with a signal, in this case SIGTSTP. You can issue a stop signal with kill:
kill -STOP <pid>
That will suspend execution of the process. It won't immediately free the memory used by it, but as memory is required for other processes the memory used by the stopped process will be gradually swapped out.
When you want to wake it up again, use
kill -CONT <pid>
The more complicated solutions, like CryoPID, are really only needed if you want the stopped process to be able to survive a system shutdown/restart - it doesn't sound like you need that.
Linux Kernel has now partially implemented the checkpoint/restart futures:https://ckpt.wiki.kernel.org/, the status is here.
Some useful information are in the lwn(linux weekly net):
http://lwn.net/Articles/375855/ http://lwn.net/Articles/412749/ ......
So the answer is "YES"
The issue is restoring the streams - files and sockets - that the program has open.
When your whole OS hibernates, the local files and such can obviously be restored. Network connections don't, but then the code that accesses the internet is typically more error checking and such and survives the error conditions (or ought to).
If you did per-program hibernation (without application support), how would you handle open files? What if another process accesses those files in the interim? etc?
Maintaining state when the program is not loaded is going to be difficult.
Simply suspending the threads and letting it get swapped to disk would have much the same effect?
Or run the program in a virtual machine and let the VM handle suspension.
Short answer is "yes, but not always reliably". Check out CryoPID:
http://cryopid.berlios.de/
Open files will indeed be the most common problem. CryoPID states explicitly:
Open files and offsets are restored.
Temporary files that have been
unlinked and are not accessible on the
filesystem are always saved in the
image. Other files that do not exist
on resume are not yet restored.
Support for saving file contents for
such situations is planned.
The same issues will also affect TCP connections, though CryoPID supports tcpcp for connection resuming.
I extended Cryopid producing a package called Cryopid2 available from SourceForge. This can
migrate a process as well as hibernating it (along with any open files and sockets - data
in sockets/pipes is sucked into the process on hibernation and spat back into these when
process is restarted).
The reason I have not been active with this project is I am not a kernel developer - both
this (and/or the original cryopid) need to get someone on board who can get them running
with the lastest kernels (e.g. Linux 3.x).
The Cryopid method does work - and is probably the best solution to general purpose process
hibernation/migration in Linux I have come across.
The short answer is "yes." You might start by looking at this for some ideas: ELF executable reconstruction from a core image (http://vx.netlux.org/lib/vsc03.html)
As others have noted, it's difficult for the OS to provide this functionality, because the application needs to have some error checking builtin to handle broken streams.
However, on a side note, some programming languages and tools that use virtual machines explicitly support this functionality, such as the Self programming language.
This is sort of the ultimate goal of clustered operating system. Mathew Dillon puts a lot of effort to implement something like this in his Dragonfly BSD project.
adding another workaround: you can use virtualbox. run your applications in a regular virtual machine and simply "save the machine state" whenever you want.
I know this is not an answer, but I thought it could be useful when there are no real options.
if for any reason you don't like virtualbox, vmware and Qemu are as good.
Ctrl-Z increases the chances the process's pages will be swapped, but it doesn't free the process's resources completely. The problem with freeing a process's resources completely is that things like file handles, sockets are kernel resources the process gets to use, but doesn't know how to persist on its own. So Ctrl-Z is as good as it gets.
There was some research on checkpoint/restore for Linux back in 2.2 and 2.4 days, but it never made it past prototype. It is possible (with the caveats described in the other answers) for certain values of possible - I you can write a kernel module to do it, it is possible. But for the common value of possible (can I do it from the shell on a commercial Linux distribution), it is not yet possible.
There's ctrl+z in linux, but i'm not sure it offers the features you specified. I suspect you asked this question since it doesn't

Can I tell Linux not to swap out a particular processes' memory?

Is there a way to tell Linux that it shouldn't swap out a particular processes' memory to disk?
Its a Java app, so ideally I'm hoping for a way to do this from the command line.
I'm aware that you can set the global swappiness to 0, but is this wise?
You can do this via the mlockall(2) system call under Linux; this will work for the whole process, but do read about the argument you need to pass.
Do you really need to pull the whole thing in-core? If it's a java app, you would presumably lock the whole JVM in-core. I don't know of a command-line method for doing this, but you could write a trivial program to call fork, call mlockall, then exec.
You might also look to see if one of the access pattern notifications in madvise(2) meets your needs. Advising the VM subsystem about a better paging strategy might work out better if it's applicable for you.
Note that a long time ago now under SunOS, there was a mechanism similar to madvise called vadvise(2).
If you wish to change the swappiness for a process add it to a cgroup and set the value for that cgroup:
https://unix.stackexchange.com/questions/10214/per-process-swapiness-for-linux#10227
There exist a class of applications in which you never want them to swap. One such class is a database. Databases will use memory as caches and buffers for their disk areas, and it makes absolutely no sense that these are ever put to swap. The particular memory may hold some relevant data that is not needed for a week until one day when a client asks for it. Without the caching/swapping, the database would simply find the relevant record on disk, which would be quite fast; but with swapping, your service might suddenly be taking a long time to respond.
mysqld includes code to use the OS / system call memlock. On Linux, since at least 2.6.9, this system call will work for non-root processes that have the CAP_IPC_LOCK capability[1]. When using memlock(), the process must still work within the bounds of the LimitMEMLOCK limit. [2]. One of the (few) good things about systemd is that you can grant the mysqld process these capabilities, without requiring a special program. If can also set the rlimits as you'd expect with ulimit. Here is an override file for mysqld that does the requisite steps, including a few others that you might need for a process such as a database:
[Service]
# Prevent mysql from swapping
CapabilityBoundingSet=CAP_IPC_LOCK
# Let mysqld lock all memory to core (don't swap)
LimitMEMLOCK=-1
# do not kills this process if low on memory
OOMScoreAdjust=-900
# Use higher io scheduling
IOSchedulingClass=realtime
Type=simple
ExecStart=
ExecStart=/usr/sbin/mysqld --memlock $MYSQLD_OPTS
Note The standard community mysql currently ships with Type=forking and adds --daemonize in the option to the service on the ExecStart line. This is inherently less stable than the above method.
UPDATE I am not 100% happy with this solution. After several days of runtime, I noticed the process still had enormous amounts of swap! Examining /proc/XXXX/smaps, I note the following:
The largest contributor of swap is from a stack segment! 437 MB and fluctuating. This presents obvious performance issues. It also indicates stack-based memory leak.
There are zero Locked pages. This indicates the memlock option in MySQL (or Linux) is broken. In this case, it wouldn't matter much because MySQL can't memlock stack.
You can do that by the mlock family of syscalls. I'm not sure, however, if you can do it for a different process.
As super user you can 'nice' it to the highest priority level -20 and hope that's enough to keep it from being swapped out. It usually is. Positive numbers lower scheduling priority. Normal users cannot nice upwards (negative nos.)
Except in extremely unusual circumstances, asking this question means that You're Doing It Wrong(tm).
Seriously, if Linux wants to swap and you're trying to keep your process in memory then you're putting an unreasonable demand on the OS. If your app is that important then 1) buy more memory, 2) remove other apps/daemons from the machine, or dedicate a machine to your app, and/or 3) invest in a really fast disk subsystem. These steps are reasonable for an important app. If you can't justify them, then you probably can't justify wiring memory and starving other processes either.
Why do you want to do this?
If you are trying to increase performance of this app then you are probably on the wrong track. The OS will swap out a process to increase memory for disk cache - even if there is free RAM, the kernel knows best (actauly the samrt guys that wrote the scheduler know best).
If you have a process that needs responsiveness (it's swapped out while not used and you need it to restart quickly) then nice it to high priority, mlock, or using a real time kernel might help.

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