error compiling a project that uses glew library in Ubuntu 12.04 - linux

When I tried to run an installer that uses GLEW as one of its dependencies, I got:
fatal error: GL/glew.h: No such file or directory
Downloaded glew1.10 from the official site and installed according to given instructions.
After that I got the same error again- did some research and copied glew.h to /usr/include/GL/glew.h. Ran the installer again and this time got:
/usr/bin/ld: error: cannot find -lGLEW
To my understanding this is a a common error in Linux for many projects and many libraries, probably I should copy some files from the source folder or add some path to an environment variable, what should i do?
I know that there are apt-get packages- libglew1.6-dev and libglew1.6, but its built upon glew1.6, which works but is probably out-dated for what i'm trying to build.
The automatic installer is node.js's npm, and what causes this error is trying to install node-webgl module.

Solved.
As it turned out, the installation seems to have placed the needed files inside /usr/lib64, and the linker searched for those files inside /usr/lib/ which probably is the right behavior in most cases.
Since i'm not familiar with node.js's npm (and with linking in general), my fix was as follows:
sudo cp /usr/lib64/libGLEW* /usr/lib/
sudo cp /usr/lib64/pkgconfig/* /usr/lib/pkgconfig/
Meaning, I reconstructed the same hirarchy inside the /usr/lib folder. This is probably not a best practice, but it works.

Related

Eclipse Crti.o and Crt1.o cannot find

I build sample code with cross compile linaro. I have two situations
Situation 1:
I download gcc-linaro-5.5.0-2017.10-x86_64_arm-linux-gnueabihf from linaro website and extract it to path /home/xxx/opt/toolchains. I also
export
PATH=$PATH:/home/xxx/opt/toolchains/gcc-linaro-5.5.0-2017.10-x86_64_arm-linux-gnueabihf/bin
Then i use eclipse for testing some simple example codes with Cross Settings /home/xxx/opt/toolchains/gcc-linaro-5.5.0-2017.10-x86_64_arm-linux-gnueabihf/bin. But when i compile, i get this error.
/home/xxx/opt/toolchains/gcc-linaro-5.5.0-2017.10-x86_64_arm-linux-gnueabihf/bin/../lib/gcc/arm-linux-gnueabihf/5.5.0/../../../../arm-linux-gnueabihf/bin/ld:
cannot find crt1.o: No such file or directory
/home/xxx/opt/toolchains/gcc-linaro-5.5.0-2017.10-x86_64_arm-linux-gnueabihf/bin/../lib/gcc/arm-linux-gnueabihf/5.5.0/../../../../arm-linux-gnueabihf/bin/ld:
cannot find crti.o: No such file or directory
I found and know that crti.o and crt1.o in /home/xxx/opt/toolchains/gcc-linaro-5.5.0-2017.10-x86_64_arm-linux-gnueabihf/arm-linux-gnueabihf/libc/usr/lib.
Situation 2:
When i follow another way. The first, i install
sudo apt-get install gcc-arm-linux-gnueabihf
Then in eclipse path of Cross Settings i config /usr/bin/ and build. Everything is OK.
So with situation 1, How I setup correctly in Eclipse? Thank for your support.

Debian / Ubuntu package installed in root as default

Created a simple debian/ubuntu package with some library files (*.so).
Works fine except, it installs them as default in the root path "/".
Since I've recreated my Makefile to output to $DESTDIR/ instead of "the usual" directory that I provide in the Makefile, when compiling from source, how do I now set the path of where the files should be installed now? I know there are several choices when using dh_make to create the package, "s" being the default one. Still, can't seem to find anything on where to tell dpkg to put the installed files.
Secondly, a Deb Library package containing only ".so" files should still be a "Single binary" since I gather that using the Library is for development purposes? Since this is a library, I just wanna make sure that's not the cause of the files being installed in the wrong location. What I mean is .so files and header files installation?
What I've used:
dh_make -e my#email.com -f ../myfile-1.0.tar.gz
dpkg-buildpackage -rfakeroot
and some configurations set i debian/control, $DESTDIR in Makefile.
Seems that it was fairly simple, yet very confusing. This works, not sure if there is a better solution.
In my makefile I have a few variables
InstallTo = /usr/lib
install:
mkdir -p $(DESTDIR)$(InstallTo)
cp $FILE_TO_COPY $(DESTDIR)$(InstallTo)
This way it will create the directory tree inside the *.deb file. I had some trouble using /usr/local/lib instead of /usr/lib/ and rmdir complained when trying to delete it and it had no files (just directories). Not sure why, but changed it to /usr/lib instead.
Since someone voted this up, I'm guessing someone were also looking for the answer and this is my solution. Perhaps someone can provide a better one if there is one.
Just a note, $DESTDIR variable is the variable that dh_make suggest the user to use in our Makefile. It's the path to where dpkg will build the program and where it will install it so it can be included in the .deb file.

Problems with porting a fortran program from ubuntu to windows

I previously had some troubles updating old code that still needed a not supported compiler and expensive libraries to a version with gfortran in Eclipse on Windows. I let it rest for a while and recently I took a whole other approach, rebuilding the program from scratch, developping on a ubuntu machine, but now I want to bring it back to a windows machine so that my co-workers can contribute on it.
The status:
Program compiles, runs and gives good results on an ubuntu machine with the GCC GNU compiler
Windows 7 machine, 64bit
Cygwin installation (for gnu fortran) with lapack and liblapack-devel (however, I don't use these, because I compile blas and lapack manually)
(C:/cygwin/lib added to windows Path)
Original Issue:
The program compiles in cygwin (by calling the make-command, calling the make command with the makefile situated here: http://thijsvandenbrande.be/phd/hamfemInstall/makefile
This returns the file hamfem.exe which returns the following error when runned by double-clicking on it in windows: The program can't start because cyglapack-0.dll is missing from your computer. Try reinstalling the program to fix this problem.
When running the executable from cygwin, by calling the ./hamfem.exe command the executable starts to run. However, I want a solution so that I can give this executable to my co-workers so that they can change the input files (located in a folder in that has a relative path to the executable).
Going further on the comments below, I tried the next things:
Adding the exact path to the C:\cygwin\lib\lapack\cyglapack-0.dll file in windows path and even rebooting afterwards doesn't help.
adding a -static to the makefile before calling the library, resulting in dependency errors because I use two commands of the lapack library that depend on quite a lot of other commands (DPBTRF and DPBTRS). These commands are used in the mainprog.f90 module. The error: /usr/lib/gcc/i686-pc-cygwin/4.7.3/../../../liblapack.a(dpbtrf.f.o): In function 'dpbtrf':
/usr/src/debug/lapack-3.4.2-1/SRC/dpbtrf.f:277: undefined reference to 'dtrsm_'
and a couple of more lines stating the dependencies.
add the liblapack.a file to the src folder, but compiler always goes back to the lapack in cygwin
On the website of lapack you can normally download the functions with their dependencies (example DPBTRF), but these are not available anymore. Does anyone have another idea how to include these two functions and their dependencies in a static library-file that I can compile beforehand and add to the src-folder?
Current (semi-)Fix
The next thing worked (a bit) for me: following the instructions on http://gcc.gnu.org/wiki/GfortranBuild to manually build libblas.a and liblapack.a in the /usr/src folder of Cygwin and refering to this folder in the makefile. The updated makefile can be found here: http://thijsvandenbrande.be/phd/hamfemInstall/makefileNew
The code compiles nicely on Windows by running the make command from cygwin (next step in the process, running it out of Eclipse) and i get a .exe file that can be run by double clicking it and that keeps running if I move it with its folder to another location. Because this process is quite labour intensive, figuring it all out, I added the answer here below, stating the commands you have to parse to cygwin in order to make it work.
For your information: my file structure looks like this (after the build, I move the .exe file one folder up, both in the linux version as the windows version):
hamfem.exe
in
input.txt
NGCR_building01.txt
out
(empty folder for output files of the routine)
src
hamfem.f90 (main file)
mainprog.f90 (file that contains the commands from lapack)
...(a bunch of other modules)
makefile
I figured things out myself, with some pointers from all over stackoverflow. In order for others to help them resolve similar issues, I would like my work method here so that the question is fully documented.
The issue can be resolved by clean building the Lapack library !and the Blas library on your local machine in cygwin and pasting the liblapack.a and libblas.a file to the library folder that you refer to in the makefile. The errors that were casted by calling Lapack staticly where a result of some routines of Blas used in the two commands.
These are the steps I followed:
download the lapack.tgz and blas.tgz files from the website and past them in the C:\Cygwin\usr\src folder
Extract these files with the following commands in cygwin:
cd /usr/src
tar -xvzf lapack.tgz
tar -xvzf blas.tgz
Build the two library files with the commands shown below in Cygwin. Compiling Lapack can take a while and will result in some errors in the end because of some missing links in the test files. These tests are run for accuracy tools. A more detailed look into the make.inc file is needed to resolve these issues.
cd $HOME
cd /usr/src/BLAS
make
mv blas_LINUX.a ../libblas.a
cd ../lapack-3.4.2
mv make.inc.example make.inc
make
mv liblapack.a ../liblapack.a
check the makefile included in this repository for the correct linking to the libraries. These should say /usr/src and -static -llapack -lblas, the other options are for the linux compiler.

Installation and maintenance of multiple versions of OpenCV (applicable to any other 3rd party library as well)

I have been trying to do build and use OpenCV 2.3.0 on my Fedora15 Lovelock 64bit machine.
Background:
First, on my 64bit Fedora15, OpenCV2.2.0 seems to be in the locations namely
/usr/share/opencv
/usr/doc
/usr/lib64 &
/usr/bin
I do not find the include files though (in /usr/include). This means that the development package was n t installed. My package manager does not list the development packages when i try to Add/remove software.
I have a need to create applications, some of which just link to 2.2 and others which link to 2.3.O of the OpenCV library.So, I thought the best solution would be to have a separate location for 3rd party libraries that i use for my development . So I created a directory in /local named soft and created an OpenCV directory. A directory structure like this one.
/local/soft/
OpenCV/
OpenCV2.2.0/
source-files
build
OpenCV2.3.0/
source-files
build
installation
share/opencv
doc
include
lib
Now, i tried building OpenCV2.3.0 and i succeeded. I configure CMake to use CMAKE_INSTALL_PREFIX to the directory named "installation" (see above), instead of the default /usr/local/. Clean. huh?
I tried building and installing OpenCv 2.2.0 in the same way. Alas 2.2.0 complains something during the build. So i thought i ll link to the already existing version in the standard locations. BUT, when i try to install the dev packages for 2.2 using my package manager,the development files for x86_64 are not found :-) which means i dont have the headers to link to the libraries in the standard location.
I cant build my executable since linker ld would not find the OpenCV that i have installed in the non-standard location.(although i point it to the exact location using the -L and -l options with gcc in my Eclipse).
Question 1: Am i doing the right thing in maintaining installations in non-standard locations? Is /usr/ the standard location where the package manager will always do the installation?
Question2 : What is the right way of linking to these libraries installed in non-standard locations? Why would not ld recognize my .so files in the lib folder?
sudo g++ logpolar.cpp -o logpolar.o -I /local/soft/OpenCV/opencv2.3.1/installation/include/ -l/local/soft/OpenCV/opencv2.3.1/build/lib/libopencv_core.so
But ld canot find -l/local/soft/OpenCV/opencv2.3.1/build/lib/libopencv_core.so
I checked the lib folder and there sure is a beautiful symbolic link to libopencv_core.so.2.3
The standard approach is to use /usr/local directory structure that already has predefined paths like /usr/local/bin, /usr/local/sbin, /usr/local/include, /usr/local/lib.
You put your software here and everything will JustWork(TM). Every Linux distro (incl. Fedora) is set up so it will load programs (libraries, headers) from this libraries.
If you would use GNU toolchain (autoconf, automake => autotools) you would be fine. With CMake you probably need to setup paths for /usr/local/include and /usr/local/lib.
On the other hand this approach wont let you use multiple versions. You can only have one. The one in /usr/local overrides the system one (installed in /usr/bin) because these paths goes first.
You can keep your approach, it is nothing incorrect. We usually put such a software in the /opt folder, so you would go for /opt/opencv/X.Y where X.Y are the version numbers.
Q2: Read the gcc man page and search for the -L option. You need something like:
gcc ... -I/opt/opencv/2.0/include -lsystem_lib -L/opt/opencv/2.0/lib -lopencv ... ...
Do not forget to set LD_LIBRARY_PATH when running programs in multiple versions to properly load correct version:
LD_LIBRARY_PATH=/opt/opencv/2.0/lib /opt/opencv/2.0/bin/opencv

Linux error while loading shared libraries: cannot open shared object file: No such file or directory

Program is part of the Xenomai test suite, cross-compiled from Linux PC into Linux+Xenomai ARM toolchain.
# echo $LD_LIBRARY_PATH
/lib
# ls /lib
ld-2.3.3.so libdl-2.3.3.so libpthread-0.10.so
ld-linux.so.2 libdl.so.2 libpthread.so.0
libc-2.3.3.so libgcc_s.so libpthread_rt.so
libc.so.6 libgcc_s.so.1 libstdc++.so.6
libcrypt-2.3.3.so libm-2.3.3.so libstdc++.so.6.0.9
libcrypt.so.1 libm.so.6
# ./clocktest
./clocktest: error while loading shared libraries: libpthread_rt.so.1: cannot open shared object file: No such file or directory
Is the .1 at the end part of the filename? What does that mean anyway?
Your library is a dynamic library.
You need to tell the operating system where it can locate it at runtime.
To do so,
we will need to do those easy steps:
Find where the library is placed if you don't know it.
sudo find / -name the_name_of_the_file.so
Check for the existence of the dynamic library path environment variable(LD_LIBRARY_PATH)
echo $LD_LIBRARY_PATH
If there is nothing to be displayed, add a default path value (or not if you wish to)
LD_LIBRARY_PATH=/usr/local/lib
We add the desired path, export it and try the application.
Note that the path should be the directory where the path.so.something is. So if path.so.something is in /my_library/path.so.something, it should be:
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/my_library/
export LD_LIBRARY_PATH
./my_app
Reference to source
Here are a few solutions you can try:
ldconfig
As AbiusX pointed out: If you have just now installed the library, you may simply need to run ldconfig.
sudo ldconfig
ldconfig creates the necessary links and cache to the most recent
shared libraries found in the directories specified on the command
line, in the file /etc/ld.so.conf, and in the trusted directories
(/lib and /usr/lib).
Usually your package manager will take care of this when you install a new library, but not always, and it won't hurt to run ldconfig even if that is not your issue.
Dev package or wrong version
If that doesn't work, I would also check out Paul's suggestion and look for a "-dev" version of the library. Many libraries are split into dev and non-dev packages. You can use this command to look for it:
apt-cache search <libraryname>
This can also help if you simply have the wrong version of the library installed. Some libraries are published in different versions simultaneously, for example, Python.
Library location
If you are sure that the right package is installed, and ldconfig didn't find it, it may just be in a nonstandard directory. By default, ldconfig looks in /lib, /usr/lib, and directories listed in /etc/ld.so.conf and $LD_LIBRARY_PATH. If your library is somewhere else, you can either add the directory on its own line in /etc/ld.so.conf, append the library's path to $LD_LIBRARY_PATH, or move the library into /usr/lib. Then run ldconfig.
To find out where the library is, try this:
sudo find / -iname *libraryname*.so*
(Replace libraryname with the name of your library)
If you go the $LD_LIBRARY_PATH route, you'll want to put that into your ~/.bashrc file so it will run every time you log in:
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/path/to/library
Update
While what I write below is true as a general answer about shared libraries, I think the most frequent cause of these sorts of message is because you've installed a package, but not installed the -dev version of that package.
Well, it's not lying - there is no libpthread_rt.so.1 in that listing. You probably need to re-configure and re-build it so that it depends on the library you have, or install whatever provides libpthread_rt.so.1.
Generally, the numbers after the .so are version numbers, and you'll often find that they are symlinks to each other, so if you have version 1.1 of libfoo.so, you'll have a real file libfoo.so.1.0, and symlinks foo.so and foo.so.1 pointing to the libfoo.so.1.0. And if you install version 1.1 without removing the other one, you'll have a libfoo.so.1.1, and libfoo.so.1 and libfoo.so will now point to the new one, but any code that requires that exact version can use the libfoo.so.1.0 file. Code that just relies on the version 1 API, but doesn't care if it's 1.0 or 1.1 will specify libfoo.so.1. As orip pointed out in the comments, this is explained well at here.
In your case, you might get away with symlinking libpthread_rt.so.1 to libpthread_rt.so. No guarantees that it won't break your code and eat your TV dinners, though.
You need to ensure that you specify the library path during
linking when you compile your .c file:
gcc -I/usr/local/include xxx.c -o xxx -L/usr/local/lib -Wl,-R/usr/local/lib
The -Wl,-R part tells the resulting binary to also look for the library
in /usr/local/lib at runtime before trying to use the one in /usr/lib/.
Try adding LD_LIBRARY_PATH, which indicates search paths, to your ~/.bashrc file
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/path_to_your_library
It works!
The linux.org reference page explains the mechanics, but doesn't explain any of the motivation behind it :-(
For that, see Sun Linker and Libraries Guide
In addition, note that "external versioning" is largely obsolete on Linux, because symbol versioning (a GNU extension) allows you to have multiple incompatible versions of the same function to be present in a single library. This extension allowed glibc to have the same external version: libc.so.6 for the last 10 years.
cd /home/<user_name>/
sudo vi .bash_profile
add these lines at the end
LD_LIBRARY_PATH=/usr/local/lib:<any other paths you want>
export LD_LIBRARY_PATH
Another possible solution depending on your situation.
If you know that libpthread_rt.so.1 is the same as libpthread_rt.so then you can create a symlink by:
ln -s /lib/libpthread_rt.so /lib/libpthread_rt.so.1
Then ls -l /lib should now show the symlink and what it points to.
I had a similar error and it didn't fix with giving LD_LIBRARY_PATH in ~/.bashrc .
What solved my issue is by adding .conf file and loading it.
Go to terminal an be in su.
gedit /etc/ld.so.conf.d/myapp.conf
Add your library path in this file and save.(eg: /usr/local/lib).
You must run the following command to activate path:
ldconfig
Verify Your New Library Path:
ldconfig -v | less
If this shows your library files, then you are good to go.
running:
sudo ldconfig
was enough to fix my issue.
I had this error when running my application with Eclipse CDT on Linux x86.
To fix this:
In Eclipse:
Run as -> Run configurations -> Environment
Set the path
LD_LIBRARY_PATH=/my_lib_directory_path
Wanted to add, if your libraries are in a non standard path, run ldconfig followed by the path.
For instance I had to run:
sudo ldconfig /opt/intel/oneapi/mkl/2021.2.0/lib/intel64
to make R compile against Intel MKL
All I had to do was run:
sudo apt-get install libfontconfig1
I was in the folder located at /usr/lib/x86_64-linux-gnu and it worked perfectly.
Try to install lib32z1:
sudo apt-get install lib32z1
If you are running your application on Microsoft Windows, the path to dynamic libraries (.dll) need to be defined in the PATH environment variable.
If you are running your application on UNIX, the path to your dynamic libraries (.so) need to be defined in the LD_LIBRARY_PATH environment variable.
The error occurs as the system cannot refer to the library file mentioned. Take the following steps:
Running locate libpthread_rt.so.1 will list the path of all the files with that name. Let's suppose a path is /home/user/loc.
Copy the path and run cd home/USERNAME. Replace USERNAME with the name of the current active user with which you want to run the file.
Run vi .bash_profile and at the end of the LD_LIBRARY_PATH parameter, just before ., add the line /lib://home/usr/loc:.. Save the file.
Close terminal and restart the application. It should run.
I got this error and I think its the same reason of yours
error while loading shared libraries: libnw.so: cannot open shared
object file: No such file or directory
Try this. Fix permissions on files:
cd /opt/Popcorn (or wherever it is)
chmod -R 555 * (755 if not ok)
I use Ubuntu 18.04
Installing the corresponding -dev package worked for me,
sudo apt install libgconf2-dev
Before installing the above package, I was getting the below error:
turtl: error while loading shared libraries: libgconf-2.so.4: cannot open shared object file: No such file or directory
I got this error and I think its the same reason of yours
error while loading shared libraries: libnw.so: cannot open shared object
file: No such file or directory
Try this. Fix permissions on files:
sudo su
cd /opt/Popcorn (or wherever it is)
chmod -R 555 * (755 if not ok)
chown -R root:root *
A similar problem can be found here.
I've tried the mentioned solution and it actually works.
The solutions in the previous questions may work. But the following is an easy way to fix it.
It works by reinstalling the package libwbclient
in fedora:
dnf reinstall libwbclient
You can read about libraries here:
https://domiyanyue.medium.com/c-development-tutorial-4-static-and-dynamic-libraries-7b537656163e

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