I want to move the output of the command:
ls -1 /${TMP_DIR}/*0000000221*.dbf | xargs | sed 's/ /,/g'
In the end of a command that come after it, like that:
ls -1 /${TMP_DIR}/*0000000221*.dbf | xargs | sed 's/ /,/g' | impdp sim/sim files=$1
For example:
execute ls -1 /${TMP_DIR}/*0000000221*.dbf | xargs | sed 's/ /,/g' will give me:
/tmp/a_0000000221.dbf,/tmp/a_00000002212.dbf,/tmp/b_0000000221.dbf
So I want the final command will look like:
impdp sim/sim files=/tmp/a_0000000221.dbf,/tmp/a_00000002212.dbf,/tmp/b_0000000221.dbf
EDIT:
Sorry I didnt write this from the beginning - I've variable in the command ${TMP_DIR}
You probably don't need that many pipes. You can use it like this:
printf "impdp sim/sim files=" && printf "%s," /tmp/*0000000221*.dbf
impdp sim/sim files=/tmp/a_0000000221.dbf,/tmp/a_00000002212.dbf,/tmp/b_0000000221.dbf,
ls is a bit redundant if you just want to get the file names.
You can get the shell to glob those and then use printf to put them one per line.
To separate those items with ',' rather than '\n', you can use paste
Finally, putting all that within $() will execute that in a subshell,
and output the result for the command in the current shell.
impdp sim/sim files=$(printf '%s\n' /${TMP_DIR}/*0000000221*.dbf | paste -d, -s)
You can try other order of commands:
impdp sim/sim files=$(ls -1 /tmp/*0000000221*.dbf | xargs | sed 's/ /,/g')
You can use globbing, an array and IFS to construct the parameter string:
$ ls -1
1.txt
2.txt
3.txt
$ echo impdp sim/sim files="$(a=(*.txt);IFS=',';echo "${a[*]}")"
impdp sim/sim files=1.txt,2.txt,3.txt
Obviously this will break on filenames with spaces or newlines.
To run, just remove the echo.
(all solutions including mine assumes your filenames do not contain spaces)
sed is a little overkill, you can use tr and avoid xargs too:
impdp sim/sim files=$(ls /tmp/*0000000221*.dbf | tr "\n" ",")
Related
I've got a command to perform a series of commands that produce a variable output string such as 123456. I want to pipe that to a sed command replacing a known string in a csv file that looks like this:
Fred,Wilma,Betty,Barney
However, the command below does not work and I haven't found any other references to using pipe values as the variable for a replace.
How does this code change if the values in the csv are in a random order and I always want to change the second value?
Example code:
find / -iname awk 2>/dev/null | sha256sum | cut -c1-10 > test.txt |
sed -i -e '/Wilma/ r test.txt' -e 's/Wilma//' input.csv
Contents of input.csv should become: Fred,0d522cd316,Betty,Barney
Okay, in
find / -iname awk 2>/dev/null | sha256sum | cut -c1-10 > test.txt | sed -i -e '/Wilma/ r test.txt' -e 's/Wilma//' input.csv
you have a bug. That "> test.txt" after cut is going to eat your stdin on sed, so things go weird with that pipe afterwards taking stdin. You don't want a pipe there, or you don't want to redirect to a file.
The way to take piped stdin and use it as a parameter in a command is through xargs.
find / -iname awk 2>/dev/null | sha256sum | cut -c1-10 | xargs --replace=INSERTED -- sed -i -e 's/Wilma/INSERTED/' input.csv
(...though that find|shasum is suspect too, in that the order of files is random(ish) and it matters for a reliable sum. You prpobably mean to "|sort" after find.)
(Some would sed -i -e "s/Wilma/$(find|sort|shasum|cut)" f, but I ain't among them. Animals.)
For replacing a fixed string like "Wilma", try:
sed -i 's/Wilma/'"$(find / -iname awk 2>/dev/null |
sha256sum | cut -c1-10)"'/' input.csv
To replace the 2nd field no matter what's in it, try:
sed -i 's/[^,]*/'"$(find / -iname awk 2>/dev/null |
sha256sum | cut -c1-10)"'/2' input.csv
I have a script which searches source files that contain a "TODO"
note inside the comments. Furthermore I use a concatenation of grep, git blame, uniq and sort to get
the list ordered by the person who wrote the TODO comment.
The following works fine in bash and zsh:
#!/bin/bash
for FILE in $(grep -r -i "todo" apps/business | awk '{print $1}' | sed 's/://' | sed 's/\#//')
do
git blame $FILE | grep -i "todo"
done | sort -k2 | uniq
Now I want to count all the entries. Instead of calling the (time expensive)
grep/git blame again, I want to save everything into $MATCHES to count it
without evaluating it again.
MATCHES=$(for FILE in $(grep -r -i "todo" apps/business | awk '{print $1}' | sed 's/://' | sed 's/\#//')
do
git blame $FILE | grep -i "todo"
done | sort -k2 | uniq)
echo $MATCHES
That's where I experience different behaviour in bash/zsh:
zsh: Returns the same as the first script (as expected)
bash: Ignores the newlines of git blame, puts everything on one line. wc -l counts 1 line.
What am I missing here? Why is bash behaving differently here?
And how do I get bash to not-ignore the newline?
zsh doesn't perform word-splitting on the unquoted parameter expansion $MATCH by default. Use echo "$MATCHES" | wc -l, and bash should work as well.
Note this is the wrong way to iterate over the output of a command; use a while loop and the read command instead.
grep -ri "todo" apps/business | awk '{print $1}' | sed -e 's/://' -e 's/\#//' |
while IFS= read -r FILE; do
git blame "$FILE" | grep -i todo
done | sort -k2 | uniq
I need some assistance trying to build up a variable using a list of exclusions in a file.
So I have a exclude file I am using for rsync that looks like this:
*.log
*.out
*.csv
logs
shared
tracing
jdk*
8.6_Code
rpsupport
dbarchive
inarchive
comms
PR116PICL
**/lost+found*/
dlxwhsr*
regression
tmp
working
investigation
Investigation
dcsserver_weblogic_
dcswebrdtEAR_weblogic_
I need to build up a string to be used as a variable to feed into egrep -v, so that I can use the same exclusion list for rsync as I do when egrep -v from a find -ls.
So I have created this so far to remove all "*" and "/" - and then when it sees certain special characters it escapes them:
cat exclude-list.supt | while read line
do
echo $line | sed 's/\*//g' | sed 's/\///g' | 's/\([.-+_]\)/\\\1/g'
What I need the ouput too look like is this and then export that as a variable:
SEXCLUDE_supt="\.log|\.out|\.csv|logs|shared|PR116PICL|tracing|lost\+found|jdk|8\.6\_Code|rpsupport|dbarchive|inarchive|comms|dlxwhsr|regression|tmp|working|investigation|Investigation|dcsserver\_weblogic\_|dcswebrdtEAR\_weblogic\_"
Can anyone help?
A few issues with the following:
cat exclude-list.supt | while read line
do
echo $line | sed 's/\*//g' | sed 's/\///g' | 's/\([.-+_]\)/\\\1/g'
Sed reads files line by line so cat | while read line;do echo $line | sed is completely redundant also sed can do multiple substitutions by either passing them as a comma separated list or using the -e option so piping to sed three times is two too many. A problem with '[.-+_]' is the - is between . and + so it's interpreted as a range .-+ when using - inside a character class put it at the end beginning or end to lose this meaning like [._+-].
A much better way:
$ sed -e 's/[*/]//g' -e 's/\([._+-]\)/\\\1/g' file
\.log
\.out
\.csv
logs
shared
tracing
jdk
8\.6\_Code
rpsupport
dbarchive
inarchive
comms
PR116PICL
lost\+found
dlxwhsr
regression
tmp
working
investigation
Investigation
dcsserver\_weblogic\_
dcswebrdtEAR\_weblogic\_
Now we can pipe through tr '\n' '|' to replace the newlines with pipes for the alternation ready for egrep:
$ sed -e 's/[*/]//g' -e 's/\([._+-]\)/\\\1/g' file | tr "\n" "|"
\.log|\.out|\.csv|logs|shared|tracing|jdk|8\.6\_Code|rpsupport|dbarchive|...
$ EXCLUDE=$(sed -e 's/[*/]//g' -e 's/\([._+-]\)/\\\1/g' file | tr "\n" "|")
$ echo $EXCLUDE
\.log|\.out|\.csv|logs|shared|tracing|jdk|8\.6\_Code|rpsupport|dbarchive|...
Note: If your file ends with a newline character you will want to remove the final trailing |, try sed 's/\(.*\)|/\1/'.
This might work for you (GNU sed):
SEXCLUDE_supt=$(sed '1h;1!H;$!d;g;s/[*\/]//g;s/\([.-+_]\)/\\\1/g;s/\n/|/g' file)
This should work but I guess there are better solutions. First store everything in a bash array:
SEXCLUDE_supt=$( sed -e 's/\*//g' -e 's/\///g' -e 's/\([.-+_]\)/\\\1/g' exclude-list.supt)
and then process it again to substitute white space:
SEXCLUDE_supt=$(echo $SEXCLUDE_supt |sed 's/\s/|/g')
I have a source input, input.txt
a.txt
b.txt
c.txt
I want to feed these input into a program as the following:
my-program --file=a.txt --file=b.txt --file=c.txt
So I try to use xargs, but with no luck.
cat input.txt | xargs -i echo "my-program --file"{}
It gives
my-program --file=a.txt
my-program --file=b.txt
my-program --file=c.txt
But I want
my-program --file=a.txt --file=b.txt --file=c.txt
Any idea?
Don't listen to all of them. :) Just look at this example:
echo argument1 argument2 argument3 | xargs -l bash -c 'echo this is first:$0 second:$1 third:$2'
Output will be:
this is first:argument1 second:argument2 third:argument3
None of the solutions given so far deals correctly with file names containing space. Some even fail if the file names contain ' or ". If your input files are generated by users, you should be prepared for surprising file names.
GNU Parallel deals nicely with these file names and gives you (at least) 3 different solutions. If your program takes 3 and only 3 arguments then this will work:
(echo a1.txt; echo b1.txt; echo c1.txt;
echo a2.txt; echo b2.txt; echo c2.txt;) |
parallel -N 3 my-program --file={1} --file={2} --file={3}
Or:
(echo a1.txt; echo b1.txt; echo c1.txt;
echo a2.txt; echo b2.txt; echo c2.txt;) |
parallel -X -N 3 my-program --file={}
If, however, your program takes as many arguments as will fit on the command line:
(echo a1.txt; echo b1.txt; echo c1.txt;
echo d1.txt; echo e1.txt; echo f1.txt;) |
parallel -X my-program --file={}
Watch the intro video to learn more: http://www.youtube.com/watch?v=OpaiGYxkSuQ
How about:
echo $'a.txt\nb.txt\nc.txt' | xargs -n 3 sh -c '
echo my-program --file="$1" --file="$2" --file="$3"
' argv0
It's simpler if you use two xargs invocations: 1st to transform each line into --file=..., 2nd to actually do the xargs thing ->
$ cat input.txt | xargs -I# echo --file=# | xargs echo my-program
my-program --file=a.txt --file=b.txt --file=c.txt
You can use sed to prefix --file= to each line and then call xargs:
sed -e 's/^/--file=/' input.txt | xargs my-program
Here is a solution using sed for three arguments, but is limited in that it applies the same transform to each argument:
cat input.txt | sed 's/^/--file=/g' | xargs -n3 my-program
Here's a method that will work for two args, but allows more flexibility:
cat input.txt | xargs -n 2 | xargs -I{} sh -c 'V="{}"; my-program -file=${V% *} -file=${V#* }'
I stumbled on a similar problem and found a solution which I think is nicer and cleaner than those presented so far.
The syntax for xargs that I have ended with would be (for your example):
xargs -I X echo --file=X
with a full command line being:
my-program $(cat input.txt | xargs -I X echo --file=X)
which will work as if
my-program --file=a.txt --file=b.txt --file=c.txt
was done (providing input.txt contains data from your example).
Actually, in my case I needed to first find the files and also needed them sorted so my command line looks like this:
my-program $(find base/path -name "some*pattern" -print0 | sort -z | xargs -0 -I X echo --files=X)
Few details that might not be clear (they were not for me):
some*pattern must be quoted since otherwise shell would expand it before passing to find.
-print0, then -z and finally -0 use null-separation to ensure proper handling of files with spaces or other wired names.
Note however that I didn't test it deeply yet. Though it seems to be working.
xargs doesn't work that way. Try:
myprogram $(sed -e 's/^/--file=/' input.txt)
It's because echo prints a newline. Try something like
echo my-program `xargs --arg-file input.txt -i echo -n " --file "{}`
I was looking for a solution for this exact problem and came to the conclution of coding a script in the midle.
to transform the standard output for the next example use the -n '\n' delimeter
example:
user#mybox:~$ echo "file1.txt file2.txt" | xargs -n1 ScriptInTheMiddle.sh
inside the ScriptInTheMidle.sh:
!#/bin/bash
var1=`echo $1 | cut -d ' ' -f1 `
var2=`echo $1 | cut -d ' ' -f2 `
myprogram "--file1="$var1 "--file2="$var2
For this solution to work you need to have a space between those arguments file1.txt and file2.txt, or whatever delimeter you choose, one more thing, inside the script make sure you check -f1 and -f2 as they mean "take the first word and take the second word" depending on the first delimeter's position found (delimeters could be ' ' ';' '.' whatever you wish between single quotes .
Add as many parameters as you wish.
Problem solved using xargs, cut , and some bash scripting.
Cheers!
if you wanna pass by I have some useful tips http://hongouru.blogspot.com
Actually, it's relatively easy:
... | sed 's/^/--prefix=/g' | xargs echo | xargs -I PARAMS your_cmd PARAMS
The sed 's/^/--prefix=/g' is optional, in case you need to prefix each param with some --prefix=.
The xargs echo turns the list of param lines (one param in each line) into a list of params in a single line and the xargs -I PARAMS your_cmd PARAMS allows you to run a command, placing the params where ever you want.
So cat input.txt | sed 's/^/--file=/g' | xargs echo | xargs -I PARAMS my-program PARAMS does what you need (assuming all lines within input.txt are simple and qualify as a single param value each).
There is another nice way of doing this, if you do not know the number of files upront:
my-program $(find . -name '*.txt' -printf "--file=%p ")
Nobody has mentioned echoing out from a loop yet, so I'll put that in for completeness sake (it would be my second approach, the sed one being the first):
for line in $(< input.txt) ; do echo --file=$line ; done | xargs echo my-program
Old but this is a better answer:
cat input.txt | gsed "s/\(.*\)/\-\-file=\1/g" | tr '\n' ' ' | xargs my_program
# i like clean one liners
gsed is just gnu sed to ensure syntax matches version brew install gsed or just sed if your on gnu linux already...
test it:
cat input.txt | gsed "s/\(.*\)/\-\-file=\1/g" | tr '\n' ' ' | xargs echo my_program
I'm trying to grovel through some other processes environment to get a specific env var.
So I've been trying a sed command like:
sed -n "s/\x00ENV_VAR_NAME=\([^\x00]*\)\x00/\1/p" /proc/pid/environ
But I'm getting as output the full environ file. If I replace the \1 with just a static string, I get that string plus the entire environ file:
sed -n "s/\x00ENV_VAR_NAME=\([^\x00]*\)\x00/BLAHBLAH/p" /proc/pid/environ
I should just be getting "BLAHBLAH" in the last example. This doesn't happen if I get rid of the null chars and use some other test data set.
This lead me to try transforming the \x00 to \x01's, which does seem to work:
cat /proc/pid/environ | tr '\000' '\001' | sed -n "s/\x01ENV_VAR_NAME=\([^\x01]*\)\x01/\1/p"
Am I missing something simple about sed here? Or should I just stick to this workaround?
A lot of programs written in C tend to fail with strings with embedded NULs as a NUL terminates a C-style string. Unless specially written to handle it.
I process /proc/*/environ on the command line with xargs:
xargs -n 1 -0 < /proc/pid/environ
This gives you one env var per line. Without a command, xargs just echos the argument. You can then easily use grep, sed, awk, etc on that by piping to it.
xargs -n 1 -0 < /proc/pid/environ | sed -n 's/^ENV_VAR_NAME=\(.*\)/\1/p'
I use this often enough that I have a shell function for it:
pidenv()
{
xargs -n 1 -0 < /proc/${1:-self}/environ
}
This gives you the environment of a specific pid, or self if no argument is supplied.
You could process the list with gawk, setting the record separator to \0 and the field separator to =:
gawk -v 'RS=\0' -F= '$1=="ENV_VAR_NAME" {print $2}' /proc/pid/environ
Or you could use read in a loop to read each NUL-delimited line. For instance:
while read -d $'\0' ENV; do declare "$ENV"; done < /proc/pid/environ
echo $ENV_VAR_NAME
(Do this in a sub-shell to avoid clobbering your own environment.)
cat /proc/PID/environ | tr '\0' '\n' | sed 's/^/export /' ;
then copy and paste as needed.
In spite of really old and answered question, I am adding one very simple oneliner, probably simpler for getting the text output and further processing:
strings /proc/$PID/environ
For some reason sed does not match \0 with .
% echo -n "\00" | xxd
0000000: 00 .
% echo -n "\00" | sed 's/./a/g' | xxd
0000000: 00 .
% echo -n "\01" | xxd
0000000: 01 .
% echo -n "\01" | sed 's/./a/g' | xxd
0000000: 61 a
Solution: do not use sed or use your workaround.