bash standard output can not be redirected into file - linux

I am reading 'advanced bash script', in Chapter 31, there is a problem. I can not figure it out.
tail -f /var/log/msg | grep 'error' >> logfile
Why is there nothing to output into logfile?
can you offer me an explanation?
thank you in advance

As #chepner comments, grep is using a larger buffer (perhaps 4k or more) to buffer its stdout. Most of the standard utilities do this when piping or redirecting to a file. They typically only switch to line-buffered mode when outputting directly to the terminal.
You can use the stdbuf utility to force grep to do line buffering of its output:
tail -f /var/log/msg | stdbuf -oL grep 'error' >> logfile
As an easily observable demonstration of this effect, you can try the following two commands:
for ((i=0;;i++)); do echo $i; sleep 0.001; done | grep . | cat
and
for ((i=0;;i++)); do echo $i; sleep 0.001; done | stdbuf -oL grep . | cat
In the first command, the output from grep . (i.e. match all lines) be buffered going into the pipe to cat. On mine the buffer appears to be about 4k. You will see the ascending numbers output in chunks as the buffer gets filled and then flushed.
In the second command, grep's output into the pipe to cat is line-buffered, so you should see terminal output for every line, i.e. more-or-less continuous output.

Related

Find a user defined keyword in real-time log (text) file using shell script

I am running a process in linux which logs the status and others info in a log file /home/path/Detail_File.log in text format. the file is being continuously written using a background process. I can display the file contents using tail -f /home/path/Detail_File.log.
I want to check the file for a key word keyword (say). How do I continuously check if the key word is found, and if found get that line in a variable.
I am not sure what should I search on internet so posting this question directly without the primary research. Any suggestion would be appreciated.
EDIT 1: Adding screenshot of the while loop suggestion by #jhnc
The echo "Time elapsed: $curr_time ..." is executed and then its silent
If you are using GNU utilities, grep has a --line-buffered option:
tail -n +1 -f /home/path/Detail_File.log |\
grep --line-buffered -F keyword |\
while read matchedline; do
dosomething "$matchedline"
done
This is a pipeline: cmd1 | cmd1 | cmd3
Backslash (\) at end of line allows using linebreak for readability.
tail output is fed into grep.
grep output is fed into the while loop.
read gets its input from grep, not from the user.
Usually, grep output is buffered - the output only becomes available once the pipe buffer is full. The --line-buffered option causes the pipe buffer to be flushed after every line. For example, consider difference between output of:
while sleep 1; do date; done |\
grep --line-buffered . |\
while read line; do echo "$(date) :: $line"; done |\
head
versus (may take a few minutes before you see anything):
while sleep 1; do date; done |\
grep . |\
while read line; do echo "$(date) :: $line"; done |\
head

Problems with tail -f and awk? [duplicate]

Is that possible to use grep on a continuous stream?
What I mean is sort of a tail -f <file> command, but with grep on the output in order to keep only the lines that interest me.
I've tried tail -f <file> | grep pattern but it seems that grep can only be executed once tail finishes, that is to say never.
Turn on grep's line buffering mode when using BSD grep (FreeBSD, Mac OS X etc.)
tail -f file | grep --line-buffered my_pattern
It looks like a while ago --line-buffered didn't matter for GNU grep (used on pretty much any Linux) as it flushed by default (YMMV for other Unix-likes such as SmartOS, AIX or QNX). However, as of November 2020, --line-buffered is needed (at least with GNU grep 3.5 in openSUSE, but it seems generally needed based on comments below).
I use the tail -f <file> | grep <pattern> all the time.
It will wait till grep flushes, not till it finishes (I'm using Ubuntu).
I think that your problem is that grep uses some output buffering. Try
tail -f file | stdbuf -o0 grep my_pattern
it will set output buffering mode of grep to unbuffered.
If you want to find matches in the entire file (not just the tail), and you want it to sit and wait for any new matches, this works nicely:
tail -c +0 -f <file> | grep --line-buffered <pattern>
The -c +0 flag says that the output should start 0 bytes (-c) from the beginning (+) of the file.
In most cases, you can tail -f /var/log/some.log |grep foo and it will work just fine.
If you need to use multiple greps on a running log file and you find that you get no output, you may need to stick the --line-buffered switch into your middle grep(s), like so:
tail -f /var/log/some.log | grep --line-buffered foo | grep bar
you may consider this answer as enhancement .. usually I am using
tail -F <fileName> | grep --line-buffered <pattern> -A 3 -B 5
-F is better in case of file rotate (-f will not work properly if file rotated)
-A and -B is useful to get lines just before and after the pattern occurrence .. these blocks will appeared between dashed line separators
But For me I prefer doing the following
tail -F <file> | less
this is very useful if you want to search inside streamed logs. I mean go back and forward and look deeply
Didn't see anyone offer my usual go-to for this:
less +F <file>
ctrl + c
/<search term>
<enter>
shift + f
I prefer this, because you can use ctrl + c to stop and navigate through the file whenever, and then just hit shift + f to return to the live, streaming search.
sed would be a better choice (stream editor)
tail -n0 -f <file> | sed -n '/search string/p'
and then if you wanted the tail command to exit once you found a particular string:
tail --pid=$(($BASHPID+1)) -n0 -f <file> | sed -n '/search string/{p; q}'
Obviously a bashism: $BASHPID will be the process id of the tail command. The sed command is next after tail in the pipe, so the sed process id will be $BASHPID+1.
Yes, this will actually work just fine. Grep and most Unix commands operate on streams one line at a time. Each line that comes out of tail will be analyzed and passed on if it matches.
This one command workes for me (Suse):
mail-srv:/var/log # tail -f /var/log/mail.info |grep --line-buffered LOGIN >> logins_to_mail
collecting logins to mail service
Coming some late on this question, considering this kind of work as an important part of monitoring job, here is my (not so short) answer...
Following logs using bash
1. Command tail
This command is a little more porewfull than read on already published answer
Difference between follow option tail -f and tail -F, from manpage:
-f, --follow[={name|descriptor}]
output appended data as the file grows;
...
-F same as --follow=name --retry
...
--retry
keep trying to open a file if it is inaccessible
This mean: by using -F instead of -f, tail will re-open file(s) when removed (on log rotation, for sample).
This is usefull for watching logfile over many days.
Ability of following more than one file simultaneously
I've already used:
tail -F /var/www/clients/client*/web*/log/{error,access}.log /var/log/{mail,auth}.log \
/var/log/apache2/{,ssl_,other_vhosts_}access.log \
/var/log/pure-ftpd/transfer.log
For following events through hundreds of files... (consider rest of this answer to understand how to make it readable... ;)
Using switches -n (Don't use -c for line buffering!).By default tail will show 10 last lines. This can be tunned:
tail -n 0 -F file
Will follow file, but only new lines will be printed
tail -n +0 -F file
Will print whole file before following his progression.
2. Buffer issues when piping:
If you plan to filter ouptuts, consider buffering! See -u option for sed, --line-buffered for grep, or stdbuf command:
tail -F /some/files | sed -une '/Regular Expression/p'
Is (a lot more efficient than using grep) a lot more reactive than if you does'nt use -u switch in sed command.
tail -F /some/files |
sed -une '/Regular Expression/p' |
stdbuf -i0 -o0 tee /some/resultfile
3. Recent journaling system
On recent system, instead of tail -f /var/log/syslog you have to run journalctl -xf, in near same way...
journalctl -axf | sed -une '/Regular Expression/p'
But read man page, this tool was built for log analyses!
4. Integrating this in a bash script
Colored output of two files (or more)
Here is a sample of script watching for many files, coloring ouptut differently for 1st file than others:
#!/bin/bash
tail -F "$#" |
sed -une "
/^==> /{h;};
//!{
G;
s/^\\(.*\\)\\n==>.*${1//\//\\\/}.*<==/\\o33[47m\\1\\o33[0m/;
s/^\\(.*\\)\\n==> .* <==/\\o33[47;31m\\1\\o33[0m/;
p;}"
They work fine on my host, running:
sudo ./myColoredTail /var/log/{kern.,sys}log
Interactive script
You may be watching logs for reacting on events?
Here is a little script playing some sound when some USB device appear or disappear, but same script could send mail, or any other interaction, like powering on coffe machine...
#!/bin/bash
exec {tailF}< <(tail -F /var/log/kern.log)
tailPid=$!
while :;do
read -rsn 1 -t .3 keyboard
[ "${keyboard,}" = "q" ] && break
if read -ru $tailF -t 0 _ ;then
read -ru $tailF line
case $line in
*New\ USB\ device\ found* ) play /some/sound.ogg ;;
*USB\ disconnect* ) play /some/othersound.ogg ;;
esac
printf "\r%s\e[K" "$line"
fi
done
echo
exec {tailF}<&-
kill $tailPid
You could quit by pressing Q key.
you certainly won't succeed with
tail -f /var/log/foo.log |grep --line-buffered string2search
when you use "colortail" as an alias for tail, eg. in bash
alias tail='colortail -n 30'
you can check by
type alias
if this outputs something like
tail isan alias of colortail -n 30.
then you have your culprit :)
Solution:
remove the alias with
unalias tail
ensure that you're using the 'real' tail binary by this command
type tail
which should output something like:
tail is /usr/bin/tail
and then you can run your command
tail -f foo.log |grep --line-buffered something
Good luck.
Use awk(another great bash utility) instead of grep where you dont have the line buffered option! It will continuously stream your data from tail.
this is how you use grep
tail -f <file> | grep pattern
This is how you would use awk
tail -f <file> | awk '/pattern/{print $0}'

Sed operation on streaming data

Need to perform sed operation on streaming data
tail -f sourcefile | sed -n 's/text1/text2/p' >~/destinationfile
I tried the above command but could not get it to work.
Both programs are linked against libc and the libc performs internal buffering on input/output operations. Buffering will be line-based when stdout(!) is a terminal but block-based when stdout is a pipe. The block-based buffering uses larger buffers and the consuming application has to wait until the buffer is filled, or the end of the stream is reached or the program calls flush() on the file descriptor. However neither tail nor sed calling flush() (with default command line options).
In your case you can see block based buffering of tail's stdin in effect. This happens because stdout is going into a pipe to tail.
Solution: You can issue the stdbuf command to disable the input buffering of tail:
if you only want to see sed's output in terminal:
stdbuf -i0 tail -f /var/log/syslog | sed -n 's/CRON/cron/p'
if you are piping to a file sed's output buffer now needs to be disabled as well!
touch output.txt
tail -f output.txt & # tail output in background in order to see
# file changes immediately
stdbuf -i0 tail -f /var/log/syslog | stdbuf -o0 sed -n 's/CRON/cron/p' > output.txt

Perl script log to file, output lag

I have a Perlscript which does some logfile parsing and sometimes executes a bash command:
$messagePath = `ls -t -d -1 $dir | head -n 5 | xargs grep -l "$messageSearchString"\`;
I start my perl script like this ./perlscript.pl > logfile.log.
Now I do a tail on the logfile to watch the progress, but the output gets stuck every time at the line I described above.
The output will stop there for some seconds and then continue. ???
To profile the problem I wrapped it like this:
print `date`;
$messagePath = `ls -t -d -1 $dir | head -n 5 | xargs grep -l "$messageSearchString"`;
print `date`;
The output shows that the command does not consume a lot of time:
So 6. Okt 22:35:04 CEST 2013
So 6. Okt 22:35:04 CEST 2013
If I run the script without redirecting the output to a file there is no LAG.
Any idea why?
I haven't tried to duplicate your behaviour, but it might be a stdout buffering problem. Try with:
$| = 1;
$messagePath = `ls -t -d -1 $dir | head -n 5 | xargs grep -l "$messageSearchString"`;
Update
I have tried to duplicate the behaviour you observe: I've had to make some assumptions but I believe my suspicion was correct. Here I'm piping, but it's the same as redirecting to a file and tailing that file:
./test.pl | awk '{ print strftime("%Y-%m-%d %H:%M:%S"), $0; }'
Without $| = 1, output is buffered and aggregated:
2013-10-06 23:08:27 Saluton, mondo: /home/lserni/test.sh
2013-10-06 23:08:27
2013-10-06 23:08:27 Waiting 10s...
2013-10-06 23:08:27 Saluton denove!
With the modification, each line is printed as it is generated:
2013-10-06 23:09:09 Saluton, mondo: /home/lserni/test.sh
2013-10-06 23:09:09
2013-10-06 23:09:09 Waiting 10s...
2013-10-06 23:09:19 Saluton denove!
I expect that your script is doing something that takes some seconds, and which is not generating that messagePath; and the output will be delayed until Perl has a sizeable chunk of data to send along, giving the impression that it's that line that's stalling.
I forgot: the timing pipe comes from here.
In situations like yours, I've had some success using the unbuffer command. It runs a command in an environment that looks to the command like it's outputting to a tty so it doesn't buffer its output. I don't know how to apply it exactly in your case, so if you want to try it, you will have to experiment a little.

Why no output is shown when using grep twice?

Basically I'm wondering why this doesn't output anything:
tail --follow=name file.txt | grep something | grep something_else
You can assume that it should produce output I have run another line to confirm
cat file.txt | grep something | grep something_else
It seems like you can't pipe the output of tail more than once!? Anyone know what the deal is and is there a solution?
EDIT:
To answer the questions so far, the file definitely has contents that should be displayed by the grep. As evidence if the grep is done like so:
tail --follow=name file.txt | grep something
Output shows up correctly, but if this is used instead:
tail --follow=name file.txt | grep something | grep something
No output is shown.
If at all helpful I am running ubuntu 10.04
You might also run into a problem with grep buffering when inside a pipe.
ie, you don't see the output from
tail --follow=name file.txt | grep something > output.txt
since grep will buffer its own output.
Use the --line-buffered switch for grep to work around this:
tail --follow=name file.txt | grep --line-buffered something > output.txt
This is useful if you want to get the results of the follow into the output.txt file as rapidly as possible.
Figured out what was going on here. It turns out that the command is working it's just that the output takes a long time to reach the console (approx 120 seconds in my case). This is because the buffer on the standard out is not written each line but rather each block. So instead of getting every line from the file as it was being written I would get a giant block every 2 minutes or so.
It should be noted that this works correctly:
tail file.txt | grep something | grep something
It is the following of the file with --follow=name that is problematic.
For my purposes I found a way around it, what I was intending to do was capture the output of the first grep to a file, so the command would be:
tail --follow=name file.txt | grep something > output.txt
A way around this is to use the script command like so:
script -c 'tail --follow=name file.txt | grep something' output.txt
Script captures the output of the command and writes it to file, thus avoiding the second pipe.
This has effectively worked around the issue for me, and I have explained why the command wasn't working as I expected, problem solved.
FYI, These other stackoverflow questions are related:
Trick an application into thinking its stdin is interactive, not a pipe
Force another program's standard output to be unbuffered using Python
You do know that tail starts by default with the last ten lines of the file? My guess is everything the cat version found is well into the past. Try tail -n+1 --follow=name file.txt to start from the beginning of the file.
works for me on Mac without --follow=name
bash-3.2$ tail delme.txt | grep po
position.bin
position.lrn
bash-3.2$ tail delme.txt | grep po | grep lr
position.lrn
grep pattern filename | grep pattern | grep pattern | grep pattern ......

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