Add a single point at an existing plot - gnuplot

I am using the following script to fit a function on a plot. In the output plot I would like to add a single value with etiquette on the fitting curve lets say the point f(3.25). I have read that for gnuplot is very tricky to add one single point on a plot particularly when this plot is a fitting function plot.
Has someone has an idea how to add this single point on the existing plot?
set xlabel "1000/T (K^-^1)" font "Helvetica,20"
#set ylabel "-log(tau_c)" font "Helvetica,20"
set ylabel "-log{/Symbol t}_c (ns)" font "Helvetica,20"
set title "$system $type $method" font "Helvetica,24"
set xtics font "Helvetica Bold, 18"
set ytics font "Helvetica Bold, 18"
#set xrange[0:4]
set border linewidth 3
set xtic auto # set xtics automatically
set ytic auto # set ytics automatically
#set key on bottom box lw 3 width 8 height .5 spacing 4 font "Helvetica, 24"
set key box lw 3 width 4 height .5 spacing 4 font "Helvetica, 24"
set yrange[-5:]
set xrange[1.5:8]
f(x)=A+B*x/(1000-C*x)
A=1 ;B=-227 ; C=245
fit f(x) "$plot1" u (1000/\$1):(-log10(\$2)) via A,B,C
plot [1.5:8] f(x) ti "VFT" lw 4, "$plot1" u (1000/\$1):(-log10(\$2)) ti "$system $type" lw 10
#set key on bottom box lw 3 width 8 height .5 spacing 4 font "Helvetica, 24"
set terminal postscript eps color dl 2 lw 1 enhanced # font "Helvetica,20"
set output "KWW.eps"
replot

There are several possiblities to set a point/dot:
1. set object
If you have simple points, like a circle, circle wedge or a square, you can use set object, which must be define before the respective plot command:
set object circle at first -5,5 radius char 0.5 \
fillstyle empty border lc rgb '#aa1100' lw 2
set object circle at graph 0.5,0.9 radius char 1 arc [0:-90] \
fillcolor rgb 'red' fillstyle solid noborder
set object rectangle at screen 0.6, 0.2 size char 1, char 0.6 \
fillcolor rgb 'blue' fillstyle solid border lt 2 lw 2
plot x
To add a label, you need to use set label.
This may be cumbersome, but has the advantage that you can use different line and fill colors, and you can use different coordinate systems (first, graph, screen etc).
The result with 4.6.4 is:
2. Set an empty label with point option
The set label command has a point option, which can be used to set a point using the existing point types at a certain coordinate:
set label at xPos, yPos, zPos "" point pointtype 7 pointsize 2
3. plot with '+'
The last possibility is to use the special filename +, which generates a set of coordinates, which are then filtered, and plotted using the labels plotting style (or points if no label is requested:
f(x) = x**2
x1 = 2
set xrange[-5:5]
set style line 1 pointtype 7 linecolor rgb '#22aa22' pointsize 2
plot f(x), \
'+' using ($0 == 0 ? x1 : NaN):(f(x1)):(sprintf('f(%.1f)', x1)) \
with labels offset char 1,-0.2 left textcolor rgb 'blue' \
point linestyle 1 notitle
$0, or equivalently column(0), is the coordinate index. In the using statement only the first one is taken as valid, all other ones are skipped (using NaN).
Note, that using + requires setting a fixed xrange.
This has the advantages (or disadvantages?):
You can use the usual pointtype.
You can only use the axis values as coordinates (like first or second for the objects above).
It may become more difficult to place different point types.
It is more involved using different border and fill colors.
The result is:

Adding to Christoph's excellent answers :
4. use stdin to pipe in the one point
replot "-" using 1:(f($1))
2.0
e
and use the method in 3rd answer to label it.
5. bake a named datablock
(version > 5.0) that contains the one point, then you can replot without resupplying it every time:
$point << EOD
2.0
EOD
replot $point using 1:(f($1)):(sprintf("%.2f",f($1))) with labels

6. A solution using a dummy array of length one:
array point[1]
pl [-5:5] x**2, point us (2):(3) pt 7 lc 3
7. Or through a shell command (see help piped-data):
pl [-5:5] x**2, "<echo e" us (2):(3) pt 7 lc 3
pl [-5:5] x**2, "<echo 2 3" pt 7 lc 3
8. Special filename '+'
pl [-5:5] x**2, "+" us (2):(3) pt 7 lc 3
It seems to be the shortest solution. But note that while it looks like a single point, these are like 500 points (see show samples) plotted on the same position.
To have only one point the sampling needs to be temporarily adjusted (see help plot sampling)
pl [-5:5] x**2, [0:0:1] "+" us (2):(3) pt 7 lc 3
9. Function with zero sampling range length
Shortest to type, but plotting as many points on top of each other as many specified with samples
pl [-5:5] x**2, [2:2] 3 w p pt 7 lc 3

Related

Plotting intersecting lines in GNUplot

I haven't been able to find any example of what I'm trying to do in GNUplot from raking docs and demos.
Essentially I want to plot the Blue, Green, and Red lines I manually drew on this output (for demonstration) at the 10/50/90% marks.
EDIT: For clarity, I'm looking to determine where the distribution lines hit the cumulative distribution at 0.1/0.5/0.9 to know which co-ordinates to draw the lines at. Thanks!
set terminal png size 1600,800 font "Consolas" 16
set output "test.png"
set title "PDF and CDF - 1000 Simulations"
set grid y2
set ylabel "Date Probability"
set y2range [0:1.00]
set y2tics 0.1
set y2label "Cumulative Distribution"
set xtics rotate by 90 offset 0,-5
set bmargin 6
plot "data.txt" using 1:3:xtic(2) notitle with boxes axes x1y1,'' using 1:4 notitle with linespoints axes x1y2
Depending on the number of points in your cumulative data curve you might need interpolation. The following example is chosen such that no original data point will be at your levels 10%, 50%, 90%. If your data is not steadily increasing, it will take the last value which matches your level(s).
The procedure is as follows:
plot your data to a dummy table.
check when Level is between to successive y-values (y0,y1).
remember the interpolated x-value in xp.
draw arrows from the borders of the graph to the point (xp,Level) (or instead use the partly outside rectangle "trick" from #Ethan).
Code:
### linear interpolation of data
reset session
set colorsequence classic
set key left
# create some dummy data
set sample 10
set table $Data
plot [-2:2] '+' u 1:(norm(x)) with table
unset table
Interpolate(yi) = x0 + (x1-x0)*(yi-y0)/(y1-y0)
Levels = "0.1 0.5 0.9"
do for [i=1:words(Levels)] {
Level = word(Levels,i)
x0 = x1 = y0 = y1 = NaN
set table $Dummy
plot $Data u (x0=x1,x1=$1,y0=y1,y1=$2, (y0<=Level && Level<=y1)? (xp=Interpolate(Level)):NaN ): (Level) w table
unset table
set arrow i*2 from xp, graph 0 to xp,Level nohead lc i
set arrow i*2+1 from xp,Level to graph 1,Level nohead lc i
}
plot $Data u 1:2 w lp pt 7 lc 0 t "Original data"
### end code
Result:
It is not clear if you are asking how to find the x-coordinates at which your cumulative distribution line hits 0.1, 0.5, 0.9 (hard to do so I will leave that for now) or asking how to draw the lines once you know those x values. The latter part is easy. Think of the lines you want to draw as the unclipped portion of a rectangle that extends off the plot to the lower right:
set object 1 rectangle from x1, 0.1 to graph 2, -2 fillstyle empty border lc "blue"
set object 2 rectangle from x2, 0.1 to graph 2, -2 fillstyle empty border lc "green"
set object 3 rectangle from x3, 0.1 to graph 2, -2 fillstyle empty border lc "red"
plot ...

transparent point plot does not work [duplicate]

How can I plot an image with partially transparent scatter points, just like in the picture below, with Gnuplot? The problem is that I don’t know how to set the points to be transparent.
Try this:
set style fill transparent solid 0.35 noborder
set style circle radius 0.02
plot 'test' u 1:2 with circles lc rgb "blue", \
'' u 1:2 every 100 w circles lc rgb "red" fs solid 1.0 border lt -1
which outputs
As you can see, you can specify for each data set whether to use transparency and which color to use.
If your data consist of two values (x and y position of the circle) you have to specify the circle's radius via set style circle .... If your data has three rows, you can use the third value to specify the circle's radius for each data point.
You can play with the transparency level, which ranges from 0 (full transparency) to 1 (no transparency).
You can use the alpha channel of argb along with lc rgb variable:
set samp 2000
randn(x) = invnorm(rand(x))
pl [-3:3][-3:3] '+' us (randn(0)):(randn(0)):(0xBB00AAFF) lc rgb variable pt 7 ps 2
.
This leaves some egde around each circle, probably an opacity effect from a circle plus a filled circle on top of it. Unfortunately, there is no edgecolor option as in matplotlib to control this. Replacing filled circles pt 7 with open circles but thick linewidth pt 6 lw 6 can mitigate this a bit
pl [-3:3][-3:3] '+' us (randn(0)):(randn(0)):(0xBB00AAFF) lc rgb variable pt 6 lw 6
.
One can also emulate a variable transparency with lc rgb variable
set samp 50
pl '+' us 1:1:(0x00AAFF+(int(0xFF*$1/10.)<<24)) pt 7 lc rgb variable ps 3
where int(0xFF*$1/10.) maps the input from 0..10 into 0..255 and <<24 shifts it into the alpha channel.
Note that in your plot only the dense regions seem to have a transparency effect, but not the scatter points in the background.

GNUPLOT - Two columns histogram with values on top of bars

yesteraday I made a similar question (this one). I could not display the value on top of bar in a gnuplot histogram. I lost many time because I couldn't find really good documentation about it, and I only can find similar issues on differents websites.
I lost many time with that but fortunately someone give me the solution. Now I am having a similar issue with an histogram with two bars, in which I have to put on top of both bars its value. I am quite near, or that is what I think, but I can't make it work properly. I am changing the script and regenerating the graph many times but I am not sure of what I am doing.
script.sh
#!/usr/bin/gnuplot
set term postscript
set terminal pngcairo nocrop enhanced size 600,400 font "Siemens Sans,8"
set termoption dash
set output salida
set boxwidth 0.8 absolute
set border 1
set style fill solid 1.00 border lt -1
set key off
set style histogram clustered gap 1 title textcolor lt -1
set datafile missing '-'
set style data histograms
set xtics border in scale 0,0 nomirror autojustify
set xtics norangelimit
set xtics ()
unset ytics
set title titulo font 'Siemens Sans-Bold,20'
set yrange [0.0000 : limite1] noreverse nowriteback
set y2range [0.0000 : limite2] noreverse nowriteback
show style line
set style line 1 lt 1 lc rgb color1 lw 1
set style line 2 lt 1 lc rgb color2 lw 1
## Last datafile plotted: "immigration.dat"
plot fuente using 2:xtic(1) ls 1 ti col axis x1y1, '' u 3 ls 2 ti col axis x1y2, '' u 0:2:2 with labels offset -3,1 , '' u 0:2:3 with labels offset 3,1
I am modifying the last code line, because is here where I set the labels. I have been able to show both labels, but in bad positions, I have also been able to show one of the labels in the right position but no the other. I have been able to show almost everything but the thing that I want. This is the graph that generates the script.
output.png
This is the source file that I use for generating the graph
source.dat
"Momento" "Torre 1" "Torre 2"
"May-16" 1500.8 787.8
"Jun-16" 1462.3 764.1
"Jul-16" 1311.2 615.4
"Ago-16" 1199.0 562.0
"Sep-16" 1480.0 713.8
"Oct-16" 1435.1 707.8
And that's the command that I execute with the parameters set
gnuplot -e "titulo='Energía consumida por torre (MWh)'; salida='output.png'; fuente='source.dat'; color1='#FF420E'; color2='#3465A4'; limite1='1800.96'; limite2='945.36'" script.sh
I think that is quite obvious what I am pretending, can someone help me?
Lots of thanks in advance.
Your script has several problems, the missing ti col is only one of them. (You can also use set key auto columnheader, then you must not give that option every time).
Don't use both y1 and y2 axis if you want to compare the values! Otherwise the correct bar heights are only a matter of luck...
Understand, how gnuplot positions the histogram bars, then you can exactly locate the top center of each bar. If you only use offset with char values (which is the case when you give only numbers), then your script will break as soon as you add or remove a data row.
The histogram clusters start at x-position 0, and are positioned centered at integer x values. Since you have two bars in each cluster and a gap of 1, the center of the first bar is at ($0 - 1/6.0) (= 1/(2 * (numberOfTorres + gapCount))), the second one at ($0 + 1/6.0):
set terminal pngcairo nocrop enhanced size 600,400 font ",8"
set output 'output.png'
set title 'Energía consumida por torre (MWh)' font ",20"
set boxwidth 0.8 absolute
set border 1
set style fill solid 1.00 border lt -1
set style histogram clustered gap 1 title textcolor lt -1
set style data histograms
set xtics border scale 1,0 nomirror autojustify norangelimit
unset ytics
set key off auto columnheader
set yrange [0:*]
set offset 0,0,graph 0.05,0
set linetype 1 lc rgb '#FF420E'
set linetype 2 lc rgb '#3465A4'
# dx = 1/(2 * (numberOfTorres + gap))
dx = 1/6.0
plot 'source.dat' using 2:xtic(1),\
'' u 3,\
'' u ($0 - dx):2:2 with labels,\
'' u ($0 + dx):3:3 with labels
Now, starting at the bars center you can safely use offset to specify only the offset relative to the bars top center:
plot 'source.dat' using 2:xtic(1),\
'' u 3,\
'' u ($0 - dx):2:2 with labels offset -1,1 ,\
'' u ($0 + dx):3:3 with labels offset 1,1
A second option would be to use the label's alignment: The labels of the red bars are right aligned at the bars right border, the labels of the blue bars are left aligned at the bars left border:
absoluteBoxwidth = 0.8
dx = 1/6.0 * (1 - absoluteBoxwidth)/2.0
plot 'source.dat' using 2:xtic(1),\
'' u 3,\
'' u ($0 - dx):2:2 with labels right offset 0,1 ,\
'' u ($0 + dx):3:3 with labels left offset 0,1
In any case, both options make your script more robust against changes of the input data.
This looks better :
plot fuente using 3:xtic(1) ls 1 ti col axis x1y1, '' u 3 ls 2 ti col axis x1y2, '' u ($0-1):3:3 with labels offset -3,1 , '' u ($0-1):2:2 with labels offset 3,1
You had 2 plots commands: only the first one was displayed.
Also, script.sh should be a bash script. This is a gnuplot script, so it should have another extension.
The problem is the ti col tab. You need to put it in every option, including labels and not only in bars. The right code is:
plot fuente using 2:xtic(1) ls 1 ti col, '' u 3 ls 2 ti col, '' u 0:2:2 ti col with labels offset -3,1 , '' u 0:3:3 ti col with labels offset 3,1
And that's how the picture is displayed now:
You can also avoid ti col and that is how it would look:

How to make scatter plots with semitransparent points in Gnuplot?

How can I plot an image with partially transparent scatter points, just like in the picture below, with Gnuplot? The problem is that I don’t know how to set the points to be transparent.
Try this:
set style fill transparent solid 0.35 noborder
set style circle radius 0.02
plot 'test' u 1:2 with circles lc rgb "blue", \
'' u 1:2 every 100 w circles lc rgb "red" fs solid 1.0 border lt -1
which outputs
As you can see, you can specify for each data set whether to use transparency and which color to use.
If your data consist of two values (x and y position of the circle) you have to specify the circle's radius via set style circle .... If your data has three rows, you can use the third value to specify the circle's radius for each data point.
You can play with the transparency level, which ranges from 0 (full transparency) to 1 (no transparency).
You can use the alpha channel of argb along with lc rgb variable:
set samp 2000
randn(x) = invnorm(rand(x))
pl [-3:3][-3:3] '+' us (randn(0)):(randn(0)):(0xBB00AAFF) lc rgb variable pt 7 ps 2
.
This leaves some egde around each circle, probably an opacity effect from a circle plus a filled circle on top of it. Unfortunately, there is no edgecolor option as in matplotlib to control this. Replacing filled circles pt 7 with open circles but thick linewidth pt 6 lw 6 can mitigate this a bit
pl [-3:3][-3:3] '+' us (randn(0)):(randn(0)):(0xBB00AAFF) lc rgb variable pt 6 lw 6
.
One can also emulate a variable transparency with lc rgb variable
set samp 50
pl '+' us 1:1:(0x00AAFF+(int(0xFF*$1/10.)<<24)) pt 7 lc rgb variable ps 3
where int(0xFF*$1/10.) maps the input from 0..10 into 0..255 and <<24 shifts it into the alpha channel.
Note that in your plot only the dense regions seem to have a transparency effect, but not the scatter points in the background.

GNUplot - plot data file (simple X and Y columns) - setting suitable color and scale on a figure

I have a simple file with two columns:
1 0.005467
2 0.005333
3 0.005467
4 0.005467
5 0.005600
6 0.005600
7 0.005467
8 0.005467
In the first column I have the x-axis values, while on the second column I have y-axis values. I would like to plot a figure of this data. I wrote a gnuplot script for this:
#!/usr/bin/gnuplot
set xlabel "test"
set ylabel "value"
set grid ytics lt 0 lw 1 lc rgb "#bbbbbb"
set grid xtics lt 0 lw 1 lc rgb "#bbbbbb"
set autoscale
set terminal postscript portrait enhanced mono dashed lw 1 'Helvetica' 14
set style line 1 lt 1 lw 3 pt 3 linecolor rgb "red"
set output 'out.eps'
plot 'data.txt' using 2:1 w points title "tests"
And, the output:
But of course, as a newbie in gnuplot, I have some troubles:
How to change the crosses on the fingure into dots?
How to change the color of the dots, to let's say, red? ( my command in my gnuplotscript seems not to work at all ...)
For the first test the adequate, accurate, exact value is 0.005467 but on my figure it doesnt look like so... I would like to place the dot on my figure for the first, second, third, (so on) test on the exact place, where is appropriate value.
How to add a grid to my figure? - SOLVED
How to get rid of the ugly text: 'data.txt' using 1:2 and replace it with a legend? - SOLVED
EDIT (SOLVED ISSUE NO 5)
plot 'data.txt' using 1:2 w points title "tests"
EDIT (SOLVED ISSUE NO 4)
set grid ytics lt 0 lw 1 lc rgb "#bbbbbb"
set grid xtics lt 0 lw 1 lc rgb "#bbbbbb"
You should read a bit in the documentation about all your commands!
Several remarks:
If you want colored points, you shouldn't use the mono (i.e. the monochrome) option, but rather color.
Your definition of the line style is correct, but in order to use it you must use linestyle 1 when plotting. Otherwise the linetype 1 is used. Compare:
set style line 1 lt 1 lw 3 pt 3 linecolor rgb "red"
plot x, 2*x linestyle 1
In order to see all the dots of a terminal, use the test command:
set terminal postscript eps enhanced color dashed lw 1 'Helvetica' 14
set output 'test.eps'
test
set output
You see, that for filled dots you must use pt 7.
I'm sure, that the points are shown at the correct values. Use
set ytics add (0.005467)
to see this.

Resources