my questions is similar to this one -
Problems installing R on Linux CentOS 6.3
I installed epel, but when I run yum install R, I get the two dependency problems -
Error: Package: R-core-3.0.1-2.el6.x86_64 (epel)
Requires: libjpeg.so.62(LIBJPEG_6.2)(64bit)
Error: Package: R-core-devel-3.0.1-2.el6.x86_64 (epel)
Requires: texinfo-tex
I tried installing texinfo-tex using the rpm file from -
http://rpm.pbone.net/index.php3/stat/4/idpl/15993086/dir/scientific_linux_6/com/texinfo-tex-4.13a-8.el6.x86_64.rpm.html
However, this takes me into a long tree of missing dependencies. I downloaded and tried installing 5 different rpm files and each time there were some missing dependencies. Ans this was just one branch of this tree of dependencies. I figured, there has got to be a better way. Can some one help? This has been driving me nuts.
Edit: Another option I'm trying is building R from source. Not sure if this will work given the missing packages though. For now however, it says it can't find a fortran compiler ("No F77 compiler found"). I installed gcc, thinking that it would have one, but apparently not.
on RHEL6.4 do
subscription-manager repos --enable rhel-6-server-optional-rpms
yum install texinfo-tex
rpm -ivh http://mirror.unl.edu/epel/6/x86_64/epel-release-6-8.noarch.rpm
yum install R
cheers Marten
I have the exact same problem and have spent about 3 hours attempting to find a yum repository out there for RHEL 6 that can solve this problem. So far, it appears that whoever added this dependency didn't actually try and install it once they added the dependency. These dependency mappings don't appear to exist anywhere in any repo that I can find.
…
So I got frustrated and tried this command
yum install texinfo-tex-4.13a-8.el6.x86_64.rpm
and it worked
Loaded plugins: rhnplugin, security
This system is receiving updates from RHN Classic or RHN Satellite.
CentALT | 951 B 00:00
elrepo | 2.9 kB 00:00
epel/metalink | 13 kB 00:00
epel-testing/metalink | 13 kB 00:00
mongodb | 951 B 00:00
puppetlabs-enterprise-extras | 1.9 kB 00:00
remi | 2.9 kB 00:00
rhel-source | 2.5 kB 00:00
rhel-x86_64-server-6 | 1.8 kB 00:00
rpmforge | 1.9 kB 00:00
scl_python27 | 2.9 kB 00:00
scl_ruby193 | 2.9 kB 00:00
Setting up Install Process
Examining texinfo-tex-4.13a-8.el6.x86_64.rpm: texinfo-tex-4.13a-8.el6.x86_64
Marking texinfo-tex-4.13a-8.el6.x86_64.rpm to be installed
Resolving Dependencies
--> Running transaction check
---> Package texinfo-tex.x86_64 0:4.13a-8.el6 will be installed
--> Finished Dependency Resolution
Dependencies Resolved
================================================================================
Package Arch Version Repository Size
================================================================================
Installing:
texinfo-tex x86_64 4.13a-8.el6 /texinfo-tex-4.13a-8.el6.x86_64 387 k
Transaction Summary
================================================================================
Install 1 Package(s)
Total size: 387 k
Installed size: 387 k
Is this ok [y/N]: y
Downloading Packages:
Running rpm_check_debug
Running Transaction Test
Transaction Test Succeeded
Running Transaction
Installing : texinfo-tex-4.13a-8.el6.x86_64 1/1
Verifying : texinfo-tex-4.13a-8.el6.x86_64 1/1
Installed:
texinfo-tex.x86_64 0:4.13a-8.el6
Complete!
# yum install R
Loaded plugins: rhnplugin, security
This system is receiving updates from RHN Classic or RHN Satellite.
Setting up Install Process
Resolving Dependencies
--> Running transaction check
---> Package R.x86_64 0:3.0.1-2.el6 will be installed
--> Processing Dependency: R-devel = 3.0.1-2.el6 for package: R-3.0.1-2.el6.x86_64
--> Running transaction check
---> Package R-devel.x86_64 0:3.0.1-2.el6 will be installed
--> Processing Dependency: R-java-devel = 3.0.1-2.el6 for package: R-devel-3.0.1-2.el6.x86_64
--> Processing Dependency: R-core-devel = 3.0.1-2.el6 for package: R-devel-3.0.1-2.el6.x86_64
--> Running transaction check
---> Package R-core-devel.x86_64 0:3.0.1-2.el6 will be installed
---> Package R-java-devel.x86_64 0:3.0.1-2.el6 will be installed
--> Finished Dependency Resolution
Dependencies Resolved
================================================================================
Package Arch Version Repository Size
================================================================================
Installing:
R x86_64 3.0.1-2.el6 epel 19 k
Installing for dependencies:
R-core-devel x86_64 3.0.1-2.el6 epel 90 k
R-devel x86_64 3.0.1-2.el6 epel 19 k
R-java-devel x86_64 3.0.1-2.el6 epel 19 k
Transaction Summary
================================================================================
Install 4 Package(s)
Total download size: 147 k
Installed size: 326 k
Is this ok [y/N]:
Installing R on 6.6 RHEL 64 bit machine
After going through many pages i found this steps, so thought to share as a quick steps:
wget http://download.fedoraproject.org/pub/epel/6/x86_64/epel-release-6-8.noarch.rpm
"It's a package which is preferred for RHEL machine."
sudo yum install tcl
“The Tcl package contains the Tool Command Language, a robust general-purpose scripting language. This package is known to build and work properly using an LFS-7.7 platform. This package is known to build and work properly using the gcc-5 compiler.”
sudo yum clean all
“Cleans the yum cache”
sudo yum install R
“For installing R”
Try this one
rpm -ivh http://mirror.unl.edu/epel/6/x86_64/epel-release-6-7.noarch.rpm
The second is:
#yum install R
Thanks & Regards,
Alok
Try sudo yum groupinstall “Development Tools”
This installs development tools which includes all compilers.
I am also trying to install the same. Tried building from source. Now trying to build with yum. Let's see how it goes
"I tried this.. it said "package epel-release-6-8.noarch is already installed". "
But not enabled... See: https://bluehatrecord.wordpress.com/2014/10/13/installing-r-on-red-hat-enterprise-linux-6-5/
I was having the same issue, And many seem to be getting stuck on this.
The dependencies are available in the RedHat Repo [rhel-6-server-optional-rpms]. Enable the repo and R should install.
Related
My instance is on this AMI: amzn2-ami-hvm-2.0.20191116.0-x86_64-gp2 (ami-01f14919ba412de34)
I want to install docker following this document so here is the output of my commands:
[ec2-user#ip-10-193-192-42 ~]$ sudo amazon-linux-extras install docker
Installing docker
Loaded plugins: extras_suggestions, langpacks, priorities, update-motd
Cleaning repos: amzn2-core amzn2extra-docker docker-ce-stable
12 metadata files removed
6 sqlite files removed
0 metadata files removed
Loaded plugins: extras_suggestions, langpacks, priorities, update-motd
amzn2-core | 2.4 kB 00:00
amzn2extra-docker | 1.3 kB 00:00
docker-ce-stable | 3.5 kB 00:00
(1/6): amzn2-core/2/x86_64/group_gz | 2.6 kB 00:00
(2/6): amzn2-core/2/x86_64/updateinfo | 174 kB 00:00
(3/6): docker-ce-stable/x86_64/updateinfo | 55 B 00:00
(4/6): docker-ce-stable/x86_64/primary_db | 37 kB 00:00
(5/6): amzn2extra-docker/2/x86_64/primary_db | 59 kB 00:00
(6/6): amzn2-core/2/x86_64/primary_db | 36 MB 00:00
Resolving Dependencies
--> Running transaction check
---> Package docker.x86_64 0:18.09.9ce-2.amzn2 will be installed
--> Processing Dependency: runc = 1.0.0 for package: docker-18.09.9ce-2.amzn2.x8 6_64
--> Processing Dependency: containerd = 1.2.6 for package: docker-18.09.9ce-2.am zn2.x86_64
--> Processing Dependency: pigz for package: docker-18.09.9ce-2.amzn2.x86_64
--> Processing Dependency: libcgroup for package: docker-18.09.9ce-2.amzn2.x86_6 4
--> Running transaction check
---> Package containerd.io.x86_64 0:1.2.10-3.2.el7 will be installed
--> Processing Dependency: container-selinux >= 2:2.74 for package: containerd.i o-1.2.10-3.2.el7.x86_64
---> Package libcgroup.x86_64 0:0.41-21.amzn2 will be installed
---> Package pigz.x86_64 0:2.3.4-1.amzn2.0.1 will be installed
--> Finished Dependency Resolution
Error: Package: containerd.io-1.2.10-3.2.el7.x86_64 (docker-ce-stable)
Requires: container-selinux >= 2:2.74
You could try using --skip-broken to work around the problem
You could try running: rpm -Va --nofiles --nodigest
Installation failed. Check that you have permissions to install.
[ec2-user#ip-10-193-192-42 ~]$
How to get this work?
EDIT
My instance is in an Autoscaling GRoup so I terminated the previous one and I tried to do docker install in the new one:
I got to install docker but when I run the command:
sudo service docker start
I logged out from the instance and I got an error window:
network error: software caused connection abort
Any clue why is this happening ?
Just tried to install Docker to the exact same AMI and all went well. I guess you’re experiencing issues because of extra repo named docker-ce-stable. You don’t need it on Amazon Linux 2 AMI, so, as soon as you got SSH access to your new instance, execute:
sudo amazon-linux-extras install docker
and you should be ok.
got the same problem, but fixed with different way.
Check in your Amazon Linux 2 box, if there is a file name
/etc/yum.repos.d/docker-ce
You should delete it. Then it would be fine to run the install command
sudo amazon-linux-extras install docker
I tried following the instructions on nodesource by running these commands as root:
curl --silent --location https://rpm.nodesource.com/setup_8.x | bash -
yum install -y nodejs
But when I run node -v afterward I can see that it only installed 0.10.48. I can see in the output of the second command that it's selecting the wrong version of the package for download:
Loaded plugins: fastestmirror, priorities
Setting up Install Process
Loading mirror speeds from cached hostfile
* epel: mirror.steadfast.net
* remi: repo1.sea.innoscale.net
* remi-safe: repo1.sea.innoscale.net
2418 packages excluded due to repository priority protections
Resolving Dependencies
--> Running transaction check
---> Package nodejs.x86_64 0:0.10.48-3.el6 will be installed
--> Finished Dependency Resolution
Dependencies Resolved
=========================================================================================================================================================================================
Package Arch Version Repository Size
=========================================================================================================================================================================================
Installing:
nodejs x86_64 0.10.48-3.el6 epel 2.1 M
Transaction Summary
=========================================================================================================================================================================================
Install 1 Package(s)
Total download size: 2.1 M
Installed size: 7.1 M
Downloading Packages:
nodejs-0.10.48-3.el6.x86_64.rpm | 2.1 MB 00:00
Running rpm_check_debug
Running Transaction Test
Transaction Test Succeeded
Running Transaction
Warning: RPMDB altered outside of yum.
Installing : nodejs-0.10.48-3.el6.x86_64 1/1
Verifying : nodejs-0.10.48-3.el6.x86_64 1/1
Installed:
nodejs.x86_64 0:0.10.48-3.el6
Complete!
I've tried uninstalling with yum remove -y nodejs npm and then running rm -fv /etc/yum.repos.d/nodesource*, yum clean all, yum update and then reinstalling but nothing seems to work.
Why doesn't it resolve to the v8 package?
I had the same problem few days ago and I was not able to install Node version 8 via the nodesource repository.
In fact, there is no setup_8.x script in the rpm repository yet.
I end up with n package to get Node version 8:
# yum install nodejs // you need to have npm installed
# npm install -g n
# n stable
# node -v // v8.4.0
Aim: Install latest docker (v1.12) in rhel 7 in offline mode
I got dependency error while installing docker 1.12 in rhel 7, and I
tried to find those dependencies in internet but didn't found those
dependencies except selinux-policy rpm.
I tried to install after yum update.
I found dependencies of docker 1.7 on internet, installed in rhel 6.7
but could not make same way for docker 1.12 in rhel 7
I tried below things
Installed docker 1.12 when system(test machine) is connected to internet and after installing docker 1.12 all dependencies will cache in /var/cahce/yum/rhel7/ location and search for above dependencies but didn't found.
Crated local yum repo and mounted iso file and then did yum update
and tried to install docker but still give same dependencies error.
I'm not sure how above steps are correct or right procedure, I just tired but anything didn't work.
my production environment does not have internet connection and it has only intranet connection only.
Can some one provide or advice me how to solve this and how to proceed this kind of problems?
Thanks in advance!
I'm kind of surprised you can't find at least the non-docker packages here as these come from standard CentOS repositories. In general, I'd use something like:
# yum provides "*/<filename>"
e.g.
# yum provides "*/libsystemd.so.*"
This obviously won't help if you've not configured the repositories on your target system, but it's pretty easy to run a Vagrant VM and see what's required there.
$ vagrant init bento/centos-7.2
$ vagrant ssh
then follow the docs at https://docs.docker.com/engine/installation/linux/centos/:
$ sudo tee /etc/yum.repos.d/docker.repo <<-'EOF'
[dockerrepo]
name=Docker Repository
baseurl=https://yum.dockerproject.org/repo/main/centos/7/
enabled=1
gpgcheck=1
gpgkey=https://yum.dockerproject.org/gpg
EOF
and install it:
$ sudo yum install docker-engine
On mine, this gives:
[vagrant#localhost ~]$ sudo yum install docker-engine
Loaded plugins: fastestmirror
Loading mirror speeds from cached hostfile
* base: mirror.ukhost4u.com
* extras: mirror.vorboss.net
* updates: mirror.vorboss.net
Resolving Dependencies
--> Running transaction check
---> Package docker-engine.x86_64 0:1.12.1-1.el7.centos will be installed
--> Processing Dependency: docker-engine-selinux >= 1.12.1-1.el7.centos for package: docker-engine-1.12.1-1.el7.centos.x86_64
--> Processing Dependency: libseccomp.so.2()(64bit) for package: docker-engine-1.12.1-1.el7.centos.x86_64
--> Processing Dependency: libltdl.so.7()(64bit) for package: docker-engine-1.12.1-1.el7.centos.x86_64
--> Running transaction check
---> Package docker-engine-selinux.noarch 0:1.12.1-1.el7.centos will be installed
---> Package libseccomp.x86_64 0:2.2.1-1.el7 will be installed
---> Package libtool-ltdl.x86_64 0:2.4.2-21.el7_2 will be installed
--> Finished Dependency Resolution
Dependencies Resolved
============================================================================================================
Package Arch Version Repository Size ============================================================================================================
Installing:
docker-engine x86_64 1.12.1-1.el7.centos dockerrepo 19 M Installing for dependencies:
docker-engine-selinux noarch 1.12.1-1.el7.centos dockerrepo 28 k libseccomp x86_64 2.2.1-1.el7 base 49 k libtool-ltdl x86_64 2.4.2-21.el7_2 updates 49 k
Transaction Summary
============================================================================================================
Install 1 Package (+3 Dependent packages)
Total download size: 19 M
Installed size: 79 M
Running that yum provides command I gave above shows you that e.g. libsystemd.so* is in the systemd-libs package and available in the "updates" repo .. see http://mirror.centos.org/centos/7/updates/x86_64/Packages/
Try this command:
yum install libtool-ltdl
After this re-run installation command.
This will be done automatically, if you have "docker-ce" repository.
Good luck!
I am trying to install GitLab on my dedicated server with no luck.
Server info:
CENTOS 6.7 x86_64 standard
WHM 11.52.1 (build 2)
I tried this guide, but I keep getting the following error:
Loaded plugins: fastestmirror, security
Setting up Install Process
Loading mirror speeds from cached hostfile
* base: centos.mirror.ca.planethoster.net
* epel: mirrors.mit.edu
* extras: centos.mirror.iweb.ca
* updates: centos.mirrors.atwab.net
Resolving Dependencies
--> Running transaction check
---> Package postfix.x86_64 2:2.6.6-6.el6_7.1 will be installed
--> Processing Dependency: mysql-libs for package: 2:postfix-2.6.6-6.el6_7.1.x86_64
--> Finished Dependency Resolution
Error: Package: 2:postfix-2.6.6-6.el6_7.1.x86_64 (updates)
Requires: mysql-libs
You could try using --skip-broken to work around the problem
You could try running: rpm -Va --nofiles --nodigest
When I run the following command:
sudo yum install postfix
I get the following error:
Loaded plugins: fastestmirror, security
Setting up Install Process
Loading mirror speeds from cached hostfile
epel/metalink | 12 kB 00:00
* base: centos.mirror.iweb.ca
* epel: mirrors.mit.edu
* extras: centos.mirrors.atwab.net
* updates: centos.mirror.netelligent.ca
base | 3.7 kB 00:00
epel | 4.3 kB 00:00
epel/primary_db | 5.8 MB 00:00
extras | 3.4 kB 00:00
updates | 3.4 kB 00:00
updates/primary_db | 2.6 MB 00:00
virtualbox/signature | 198 B 00:00
virtualbox/signature | 951 B 00:00 ...
No package mysql-libs available.
Error: Nothing to do
When I run the following command:
sudo yum install mysql-libs
What I eventually did was skip the installation of postfix. I skipped it like so:
sudo yum install --skip-broken curl openssh-server openssh-clients postfix cronie
Then I edited the gitlab.rb config file using something like nano:
nano /etc/gitlab/gitlab.rb
and changed the external_url' and added to it a random unused port number:
external_url 'http://example.com:8443/'
then run
sudo gitlab-ctl reconfigure
for the change to take effect.
Voila it works.
It looks like a common problem with CentOS. Similar question has been answered here on fixing the yum install postfix and missing mysql-libs.
NOTE: Since I can't comment I will provide this as an answer and update based on any comments.
I suggest you use the Bitnami one-click install GitLab. It's very easy to install GitLab.
More info : https://bitnami.com/stack/gitlab
and Wiki is : https://wiki.bitnami.com/Applications/BitNami_GitLab#How_to_change_the_default_address_for_GitLab.3f
I'm trying to install Sphinx search on a CentOS VPS via SSH but I keep getting dependency issues that I can't seem to resolve.
Here's the OS I'm using:
cat /etc/redhat-release
CentOS 6.4 (Final)
uname -a
Linux host.example.com 2.6.32-042stab074.10 #1 SMP Fri Mar 1 09:18:44 MSK 2013 i686 i686 i386 GNU/Linux
This to me looks like I need the 32-bit CentOS 6 rpm so I tried to install it with this command:
sudo yum install http://sphinxsearch.com/files/sphinx-2.0.8-1.rhel6.i386.rpm
but I get the following error message:
Loaded plugins: fastestmirror
Loading mirror speeds from cached hostfile
* base: mirrors.advancedhosters.com
* extras: centos.mirror.constant.com
* updates: mirror.lug.udel.edu
base | 3.7 kB 00:00
extras | 3.5 kB 00:00
updates | 3.4 kB 00:00
Setting up Install Process
sphinx-2.0.8-1.rhel6.i386.rpm | 5.6 MB 00:30
Examining /var/tmp/yum-root-oMekz6/sphinx-2.0.8-1.rhel6.i386.rpm: sphinx-2.0.8-1.rhel6.i386
Marking /var/tmp/yum-root-oMekz6/sphinx-2.0.8-1.rhel6.i386.rpm to be installed
Resolving Dependencies
--> Running transaction check
---> Package sphinx.i386 0:2.0.8-1.rhel6 will be installed
--> Processing Dependency: libmysqlclient.so.16 for package: sphinx-2.0.8-1.rhel6.i386
--> Processing Dependency: libmysqlclient.so.16(libmysqlclient_16) for package: sphinx-2.0.8-1.rhel6.i386
--> Finished Dependency Resolution
Error: Package: sphinx-2.0.8-1.rhel6.i386 (/sphinx-2.0.8-1.rhel6.i386)
Requires: libmysqlclient.so.16
Error: Package: sphinx-2.0.8-1.rhel6.i386 (/sphinx-2.0.8-1.rhel6.i386)
Requires: libmysqlclient.so.16(libmysqlclient_16)
You could try using --skip-broken to work around the problem
** Found 2 pre-existing rpmdb problem(s), 'yum check' output follows:
frontpage-2002-SR1.2.i386 has missing requires of libexpat.so.0
sendmail-cf-8.14.4-8.el6.noarch has missing requires of sendmail = ('0', '8.14.4', '8.el6')
No matter what I try I always seem to be missing libmysqlclient.so.16.
Any idea where I can find this package?
yum install mysql-devel
should do it.
Install the remi repository:
[http://blog.famillecollet.com/pages/Config-en]
Enterprise Linux 6 (with EPEL) i386 or x86_64
wget http://dl.fedoraproject.org/pub/epel/6/i386/epel-release-6-8.noarch.rpm
wget http://rpms.famillecollet.com/enterprise/remi-release-6.rpm
rpm -Uvh remi-release-6*.rpm epel-release-6*.rpm
then install compat-mysql51
yum --enablerepo=remi install compat-mysql51
then install sphinx from the rpm downloaded
yum localinstall sphinx-2.1.2-1.rhel6.SYSTEM-VERSION.rpm
Use the SphinxSearch docker files (docker hub link) to easily install SphinxSearch.
Grab it:
docker pull leodido/sphinxsearch:latest
If you want to see how to compile from source (which I recommend as the better mode to install SphinxSearch), look into them - e.g., here.