mcc -mv in linux machine R2013a - linux

When I am trying to make executable files of my .m-files on a Linux machine, some of the the .m-files are working absolutely fine.
However, one file which has camera input inside the .m-file is giving me this error:
Depfun error: 'Unexpected Standard exception from MEX file. What() is: ..' Error using mcc Error executing mcc, return status = 1 (0x1).
But when I use the same .m-file on Windows and R2012a it is working properly without any error.
I found a bug report here - is this a similar problem?
How do I solve it?
Here is the simple code of my .m-file:
function yuv()
vid1 = videoinput('linuxvideo', 1, 'YUYV_1280x960');
set(vid1,'FramesPerTrigger',1);
start(vid1);
imageData1=getdata(vid1,1);
imageData=ycbcr2rgb(imageData1);
imagesc(imageData(:,:,:,1));
end

I was getting the same Depfun error, "What() is: ..", under R2013a on Linux but no errors when using a different OS or an older MATLAB version to compile my code. Following the bug report you linked to fixed it for me.
In the zip file linked to in the bug report you'll find a depfun.opts file. Rename or move your original depfun.opts file that's located in [matlabroot]/toolbox/compiler and copy the new one in its place.
Putting the new depfun.opts file in place is all it took for me to be able to compile using R2013a on Linux.
Also note, the bug report says that it could be caused by the importdata function or the Parallel Computing Toolbox but I'm not using either of those.

Related

Golem Task respons back with runtime error 2, can't determine the cause

Repo for all code I've been using is updated here . When I run the requestor script it exits with a runtime error 2 (File not found). I am not sure how to further debug this or fix it. So far I've converted my code over to a python slim docker image to better mirror the example. It also works for me when I spin up a docker image that typing and running "/golem/work/imageclassifier.py --trainmodel" works from root. I switched all my code to use absolute paths. I also did make sure the shebang (#!) uses linux end of file characters rather than windows before which was giving me errors. Fixed a bug where my script returns error code 2 when called with no args to now pass.
clf.fit(trainDataGlobal, trainLabelsGlobal)
pkl_file = "classifier.pkl"
with open(pkl_file, 'wb') as file:
pickle.dump(clf, file)
is the only piece I could think of that causes the issue, but as far as I can tell this is the proper way to pickle something in python. Requestor script is also heavily based on the simple service example and I tried to mirror my design to that. I just need help in getting more information while debugging, or guidance on how to move forward from here

create exception when python command generates a program.exe has stopped working type error

I am facing a problem with a program i am developing in Python 3.6 under Windows 10.
One particular command generates an unknown error, windows throws a 'program.exe has stopped working' message and the program exits.
The command is a 3d-model loader that is part of another python package (Panda3D). The crash is always associated with this command (and more particularly with a specific dll of the loader) and a particular file that it tries to open.
Since i cannot locate and therefore solve the faults in the dll (probably there is a bug there) i would like to just pass the problematic file and continue to the next one. But since python exits and i do not know the error type, the typical try, except does not work.
So, i would like to know if there is a way to predict this type of behavior in my code and prevent the program from exiting.
Many thanks for any help.
The pop-up "Program.exe has stopped working." can be caused by a variety of things and therefor there is no "one size fits all" type solution. But if you're certain that your problem is cause by a specific line of code you can always try something along the lines of :
try:
loader.loadModel("c/path/to/your/file")
except Exception as e:
print(e.message, e.args)
# your error-handling code here
Make sure the file path that you're giving to loadModel respects the following :
# WRONG:
loader.loadModel("c:\\Program Files\\My Game\\Models\\Model1.egg")
# RIGHT:
loader.loadModel("/c/Program Files/My Game/Models/Model1.egg")
Source : pandas3d official documentation

Octave xlswrite seems to work but I can't find the file

I am trying to use xlswrite in Octave to write to an excel file. The xlswrite command seems to work fine but I don't find the excel file in the current working directory after xlswrite is executed. In fact, I can't find it anywhere on my machine.
For example, I tried the following code to write data to a file:
A = eye(5,5);
status = xlswrite('myA.xlsx',A)
Detected XLS interfaces: status = 1
The write operation seems to have been successful but I can't find myA.xlsx anywhere. Any help in resolving this issue will be much appreciated.
FYI, I am using Octave 4.0.0 and io 2.2.9. The OS is linux mint 17.2.
Thanks,
HC
PS: The problem seems to occur when the working directory is on the cloud (Google Drive in the present context). If I change the working directory to a local directory, xlswrite seems to work fine.

OpenNI. Error loading oni file (Bad File Extension)

I am trying to use OpenNI and Nite from ROS framework.
Everything compiles without problems, but in execution, the first task I want to do is load an existing oni file to reproduce its content.
After having a look at the working code, I have this piece of code that appears everywhere:
ROS_INFO("Init OpenNi for Point Gesture");
nRetVal=g_context.Init();
nRetVal = g_context.OpenFileRecording("//home//alberto//desktop//recording.oni", g_player);
if (nRetVal != XN_STATUS_OK)
{
printf("Can't open recording %s\n", xnGetStatusString(nRetVal));
return;
}
The file exists, the path is OK, I have tested it many times, but I always obtain the same error:
"Can't open recording Bad file extension"
Could it be because the Oni file has been created with a higher version of Open NI?
Mine is 1.5.4.0 in Ubuntu 12.04, and the file appears to have been created with 1.5.7.10....however, I do not have this version available.
How could I read and open this Oni file without errors? I can not continue with the rest of the application.
Thank you all very much in advance,

Issues running FSL command in Linux environment

I am new to FSL, using version 4.1.8. I am trying to run a script that reads and generates *.nii files, which format is normally supported by FSL. I am calling an FSL function, probtrackx from within Matlab. However, I get the following error message seemingly unable to generate or recognize *.nii files:
** ERROR (nifti_image_read): failed to find header file for '~/Documents/fMRI_data/../DTI/fsl_dti/masks/target_mask_001'
** ERROR: nifti_image_open(~/Documents/fMRI_data/../DTI/fsl_dti/masks/target_mask_001): bad header info
ERROR: failed to open file ~/Documents/fMRI_data/../DTI/fsl_dti/masks/target_mask_001
ERROR: Could not open image ~/Documents/fMRI_data/../DTI/fsl_dti/masks/target_mask_001
The files do exist but FSL fails to recognize them. Any help as to how to correct the issue and get FSL to work properly would be most appreciated. I suspect it's a Linux settings issue, just not sure how to fix it. A solution to a related problem in a previous posting suggested adding ls='ls --color=auto'. I've tried it to on avail.
Some FSL tools assume that the $FSLDIR unix unvironment variable is set, which might not be the case in your MATLAB environment. You can fix that with something like setenv('FSLDIR', '/usr/local/fsl') (modified of course if your FSL installation is in a different place). Some also need the regular FSL setup script to be executed as well: system('. ${FSLDIR}/etc/fslconf/fsl.sh'). See also: http://www.fmrib.ox.ac.uk/fsl/fsl/downloading.html.
Instead of the more complicated probtrackx script, another thing to try first is simply:
system('fslhd ~/Documents/fMRI_data/../DTI/fsl_dti/masks/target_mask_001')
If this fails with the same error, then you know that you entered the path to the data incorrectly. For example, do you mean to have the .. in there?
Also, in the future, the best place to get FSL support is on their mailing list at: https://www.jiscmail.ac.uk/cgi-bin/webadmin?A0=fsl
Does MATLAB have access to run other fsl commands? If you are able to run a command from the command line but not through MATLAB, the MATLAB user may not have access to run fsl or may be looking for some FSL variables.
You might have to do the equivalent of this for a linux system

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