I met very strange problem during testing cassandra. I have a very simple column family that stores video data (keys point to time period and there is only one column containing ~2MB video for this period).
Use Case
I start to load data using Hector API (round-robin) to 6 empty nodes (8GB RAM for Cassandra)- load is run in 4 threads adding 4 rows in second for each thread.
After a while (running load for hour or so) near 100-200 GB are added to the node (depending on the replication factor) and then one or several nodes become unreachable. (no pinging just reboot helps)
Why Compaction
I do use tiered-level compaction and monitoring the system(Debian) i can see that it actually not writes but compaction that takes almost all resources (disk, memory) and cause server to refuse writes and than fail.
After like 30-40 minutes of test compaction tasks just cannot be handled and get queued. Interesting thing is that there are no deletes and updates - so compaction just reads/writes data again and again without bringing actual value to me (like it can be compacted once in the evening).
When i slow down the pace - i.e running 2 threads with 1 second delay things go better but whether it still be working when i have 20TB not 100 GB on a node.
Is Cassandra optimized for such type of workload? How the resources are normally distributed between compaction and reads/writes?
Update
Update of network driver solved problem with unreachable cluster
Thanks,
Sergey.
Cassandra will use up to in_memory_compaction_limit_in_mb memory for a compaction. It is routine to have compaction running while reads and writes are served simultaneously. It is also normal that compaction can fall behind if you continue to throw writes at it as fast as possible; if your read workload requires that compaction be up to date or close to it at all times, then you'll need a larger cluster to spread the load around more machines.
Recommended amount of disk per node for online queries is up to 500GB, maybe 1TB if you're pushing it. Remember that this amount of data will have to be rebuilt if a node fails. Typical Cassandra workloads are CPU-bound or iops-bound, not disk-space bound, so you won't be able to make good use of that space anyway.
(It's also possible to do batch analytics against Cassandra, which we do with the Cassandra Filesystem, in which case higher disk:cpu ratios are desirable, but we use a custom compaction strategy for that as well.)
It's not clear from your report why a server would become unreachable. This is really an OS-level problem. (Are you swapping? Disabling swap would be a good first step.)
Related
As stated in the title, we are having a problem with our Cassandra cluster. There are 9 nodes with a replication factor of 3 using NetworkTopologyStrategy. All in the same DC and Rack. Cassandra version is 3.11.4 (planning to move on 3.11.10). Instances have 4 CPU and 32 GB RAM. (planning to move on 8 CPU)
Whenever we try to run repair on our cluster (using Cassandra Reaper on one of our nodes), we lose one node somewhere in the process. We quickly stop the repair, restart Cassandra service on the node and wait for it to join the ring. Therefore we are never able to run repair these days.
I observed the problem and realized that this problem is caused by high CPU usage on some of our nodes (exactly 3). You may see the 1 week interval graph in below. Ups and downs are caused by the usage of the app. In the mornings, it's very low.
I compared the running processes on each node and there is nothing extra on the high CPU nodes. I compared the configurations. They are identical. Couldn't find any difference.
I also realized that these nodes are the ones that take most of the traffic. See the 1 week interval graph in below. Both sent & received bytes.
I made some research. I found this thread and at the end it is recommended to set dynamic_snitch: false in Cassandra configuration. I looked at our snitch strategy which is GossipingPropertyFileSnitch. In practice, this strategy should work properly but I guess it doesn't.
The job of a snitch is to provide information about your network topology so that Cassandra can efficiently route requests.
My only observation that could be cause of this issue is there is a file called cassandra-topology.properties which is specifically told to be removed if using GossipingPropertyFileSnitch
The rack and datacenter for the local node are defined in cassandra-rackdc.properties and propagated to other nodes via gossip. If cassandra-topology.properties exists, it is used as a fallback, allowing migration from the PropertyFileSnitch.
I did not remove this file as I couldn't find any hard proof that this is causing the issue. If you have any knowledge on this or see any other reason to my problem, I would appreciate your help.
These two sentences tell me some important things about your cluster:
high CPU usage on some of our nodes (exactly 3).
I also realized that these nodes are the ones that take most of the traffic.
The obvious point, is that your replication factor (RF) is 3 (most common). The not-so-obvious, is that your data model is likely keyed on date or some other natural key which results in the same (3?) nodes serving all of the traffic for long periods of time. Running repair during those high-traffic periods will likely lead to issues.
Some things to try:
Have a look at the data model, and see if there's a better way to partition the data to distribute traffic over the rest of the cluster. This is often done with a modeling technique known as "bucketing" (adding another component...usually time based...to the partition key).
Are the partitions large? (Check with nodetool tablehistograms) And by "large," like > 10MB? It could also be that the large partitions are causing the repair operations to fail. If so, hopefully lowering resource consumption (below) will help.
Does your cluster sustain high amounts of write throughput? If so, it may also be dealing with compactions (nodetool compactionstats). You could try lowering compaction throughput (nodetool setcompactionthroughput) to free up some resources. Repair operations can also invoke compactions.
Likewise, you can also lower streaming throughput (nodetool setstreamthroughput) during repairs. Repairs will take longer to stream data, but if that's what is really tipping-over the node(s), it might be necessary.
In case you're not already, set up another instance and use Cassandra Reaper for repairs. It is so much better than triggering from cron. Plus, the UI allows for some finely-tuned config which might be necessary here. It also lets you pause and resume repairs, to pick-up where it leaves off.
We have a 30+ node Cassandra cluster (3.11.2) in 4 data centers. One of the centers consists of 8 nodes in Azure running on Standard DS12 v2 (4cpu, 28gb) nodes with a 500GB premium SSD drive. All in the same data center (central US).
We are seeing a dramatic CPU imbalance in the node activity when pushed to the max. We have a keyspace with about 200 million records, and we're running a process to check and refresh the records if necessary from another data stream.
What's happening, is we have 4 nodes that are running at 70-90% CPU compared to 15-25% of the other 4. The measurement of the CPU is being done in the nodes themselves, because Azure's own metrics is broken and never represents what is actually happening.
Digging into a pair of nodes (one low CPU and one high) the difference is the iowait% of the two. The data in the keyspace is balanced (within reason - they are all within 5% of another in record count and size). It looks like the number of reads is balanced, and even the read latency as reported by Cassandra is similar.
When I do an iostat compare of the nodes, the high CPU node is reporting a much higher (by 50 to 100%) rKB/s numbers... which is likely leading to the difference in iowait% time.
These nodes are 100% configured the same, running the same version of everything (OS, libraries, everything) that I can think to look. I cannot figure out why some nodes are deciding to do more disk reads that the others, resulting in the cluster as a whole slowing down.
Anybody have any suggestions on where I can look for differences?
The only thing that is a pattern, is the nodes that are slower are the 4 nodes that were added later in our expansion. We started with 4 nodes for a while and added 4 more when we needed space. All the appropriate repairs and other tasks required with node additions were done - the fact that the records and physical size of the data files on disk being equal should attest to that.
When we shut down our refresh process, the all the nodes settle down to a even 5% or less CPU across the board. No compaction or any other maintenance is happening that would indicate something different.
plz help... :)
Our final solution for this - to fix ONLY the unbalanced problem was to cleanup, full repair and compact. At that point the nodes are relatively equally used. We suspect expanding the cluster (adding nodes) may have left elements of data on the older nodes that were not compacted out based on regular compaction events.
We are still working to try to solve the load issue; but now at least all the nodes are feeling the same CPU crunch.
I have a Cassandra Cluster (2 DC) with 6 nodes each and RF 2. 4 of the nodes (in each DC) getting full so I need to cleanup space very soon.
I tried to run a full repair but ended up as a bad idea since the space start increased even more and the repair eventually hanged. As a last solution I am thinking to start repairing and then cleanup specific columns starting from the smallest to the biggest.
i.e
nodetool repair -full foo_keyspace bar_columnfamily
nodetool cleanup foo_keyspace bar_columnfamily
Do you think that this procedure will be safe for the data?
Thank you
The commands that you presented in your question make several incorrect assumptions. First, "repair" is not supposed to, and will not, save any space. All repair does is to find inconsistencies between different replicas and repair them. It will either do nothing (if there's no inconsistencies), or add data, not remove data.
Second, "cleanup" is something you need to do after adding new nodes to the cluster - after each node sent some of its data to the new node, a "cleanup" removes the data from the old nodes. But cleanup is not relevant when not adding node.
The command you may be looking for is "compact". This can save space, but only when you know you had a lot of overwrites (rewriting existing rows), deletions or data expirations (TTL). What compaction strategy are you using? If it's the default, size-tiered compaction strategy (STCS) you can start major compaction (nodetool compact) but should be aware of a big risk involved:
Major compaction merges all the data into one sstable (Cassandra's on-disk file format), dropping deleted, expired or overwritten data. However, during this compaction process, you have both input and output files, and at worst case this may double your disk usage, and may fail if the disk is more than 50% full. This is why a lot of Cassandra best-practice guides suggest never to fill more than 50% of the disk. But this is just the worst case. You can get along with less free space if you know that the output file will be much smaller than the input (because most of the data has been deleted). Perhaps more usefully, if you have many separate tables (column family), you can compact each one separately (as you suggested, from smallest to biggest) and the maximum amount of disk space needed temporarily during the compaction can be much less than 50% of the disk.
Scylla, a C++ reimplementation of Cassandra, is developing something known as "hybrid compaction" (see https://www.slideshare.net/ScyllaDB/scylla-summit-2017-how-to-ruin-your-performance-by-choosing-the-wrong-compaction-strategy) which is like Cassandra's size-tiered compaction but does compaction in small pieces instead of generating one huge file, to avoid the huge temporary disk usage during compaction. Unfortunately, Cassandra doesn't have this feature yet.
Good idea is first start repair on smallest table on smallest keyspace one by one and complete repair. It will take time but safer way and no chance to hang and traffic loss.
Once repair completed start cleanup in the same way as repair. This way no impact on node and cluster as well.
You shouldn't fill more than about 50-60 % of your disks to make room for compaction. If you're above that amount of disk usage you need to consider getting bigger disks or add more nodes.
Datastax recommendations are usually good to follow: https://docs.datastax.com/en/dse-planning/doc/planning/planPlanningDiskCapacity.html
My company and I have purchased about 80,000$ in hardware to accomplish a goal. We have about 22,000 writes/sec in multiple application database for our Cassandra Cluster. We built 2 x nodes of Dual 3.5Ghz Xeons, 128GB RAM, Areca 1883, all top of the line high throughput. We also have a SSD RAID 10 array for Commitlog/saved_caches so that is not delayed.
The issue we have is the amount of data. In about 4 days we collected 1.8TB of data. We have no intention of ever releasing data. We then got a JBOD enclosure and put 6TB Platter drives in, 10 each, 20 total for about 110TB of space. We run fine with single replication, the issue is when we run to double replication.
We would love to add more nodes, we know that is the correct way, but at 20,000$ a node its costly. My question is, is it true to say if our write speed is the issue, that adding 10 more drives in each machine should allow for double the write speeds?
Does anyone have some of similar things going on and have some tweaks they made to Cassandra.yaml?
We did run htop for a while when we were in double replication, and CPU did seem to get a bit intensive (Read 24% average but it looks pretty close to maxed). RAM is all being used, 128GBs.
ANY thoughts on the matter will be considered and investigated.
Thanks,
Ken
It is not generally true that you can increase write speed simply by increasing disks, unless you are sure that you are IO bound. Cassandra batches writes (mutations go to the commitlog first, then a table in RAM, then are batch written to sstables when that table reaches a certain threshold - linear writes, so it's generally fast, even on spinning disks). At some point, you will max out the commitlog drive, fill the memtable faster than you can flush, or simply get to the point where GC can't keep up.
There are fairly large users of Cassandra who run multiple Cassandra instances on a given server simply to get the benefits of additional nodes without "just" adding disk. By running two JVMs, you can mitigate the pause times of a single node, and still take advantage of your (oversized) hardware. This is easiest if you can assign multiple IPs to your individual servers, but running on different ports also works. This is fairly atypical, and you'll need to pay close attention to your configs to avoid stepping on each other, but it will work, and will make more efficient use of your hardware than simply running huge nodes.
If I'm reading that correctly, you only have 2 nodes total?
If you only have 2 nodes I doubt that disk bandwidth would be the problem. Cassandra is usually CPU limited more than anything else.
Writes generally go to memory, so the disk only comes into play when memtables are flushed to disk as SStables. Now the thing that will probably kill your performance is when those SStables need to be compacted. When compaction starts happening, guess what part of the system that will stress, yup, the CPU.
You will also have a problem running repairs with huge disks like that. Usually I find that sustained transaction throughput is limited by compactions and repairs more than raw write performance.
With two nodes and single replication, you'd be splitting the load between the two nodes, with half going to one and half going to the other. If you set the replication factor to two, now every write would be going to both nodes, which is like going back in time to having a single machine database.
So I think it was a bad call to buy a small number of high end machines. You would have had much better performance with more machines where each machine was less expensive. You need more machines to spread out the load and get more CPUs into the equation.
Also you mention a disk enclosure. I hope you are not trying to use network storage with Cassandra. It needs the disks to be local.
I am considering the design of a Cassandra cluster.
The use case would be storing large rows of tiny samples for time series data (using KairosDB), data will be almost immutable (very rare delete, no updates). That part is working very well.
However, after several years the data will be quite large (it wil reach a maximum size of several hundreds of terabytes - over one petabyte considering the replication factor).
I am aware of advice not to use more than 5TB of data per Cassandra node because of high I/O loads during compactions and repairs (which is apparently already quite high for spinning disks).
Since we don't want to build an entire datacenter with hundreds of nodes for this use case, I am investigating if this would be workable to have high density servers on spinning disks (e.g. at least 10TB or 20TB per node using spinning disks in RAID10 or JBOD, servers would have good CPU and RAM so the system will be I/O bound).
The amount of read/write in Cassandra per second will be manageable by a small cluster without any stress. I can also mention that this is not a high performance transactional system but a datastore for storage, retrievals and some analysis, and data will be almost immutable - so even if a compaction or a repair/reconstruction that take several days of several servers at the same time it's probably not going to be an issue at all.
I am wondering if some people have an experience feedback for high server density using spinning disks and what configuration you are using (Cassandra version, data size per node, disk size per node, disk config: JBOD/RAID, type of hardware).
Thanks in advance for your feedback.
Best regards.
The risk of super dense nodes isn't necessarily maxing IO during repair and compaction - it's the inability to reliably resolve a total node failure. In your reply to Jim Meyer, you note that RAID5 is discouraged because the probability of failure during rebuild is too high - that same potential failure is the primary argument against super dense nodes.
In the days pre-vnodes, if you had a 20T node that died, and you had to restore it, you'd have to stream 20T from the neighboring (2-4) nodes, which would max out all of those nodes, increase their likelihood of failure, and it would take (hours/days) to restore the down node. In that time, you're running with reduced redundancy, which is a likely risk if you value your data.
One of the reasons vnodes were appreciated by many people is that it distributes load across more neighbors - now, streaming operations to bootstrap your replacement node come from dozens of machines, spreading the load. However, you still have the fundamental problem: you have to get 20T of data onto the node without bootstrap failing. Streaming has long been more fragile than desired, and the odds of streaming 20T without failure on cloud networks are not fantastic (though again, it's getting better and better).
Can you run 20T nodes? Sure. But what's the point? Why not run 5 4T nodes - you get more redundancy, you can scale down the CPU/memory accordingly, and you don't have to worry about re-bootstrapping 20T all at once.
Our "dense" nodes are 4T GP2 EBS volumes with Cassandra 2.1.x (x >= 7 to avoid the OOMs in 2.1.5/6). We use a single volume, because while you suggest "cassandra now supports JBOD quite well", our experience is that relying on Cassandra's balancing algorithms is unlikely to give you quite what you think it will - IO will thundering herd between devices (overwhelm one, then overwhelm the next, and so on), they'll fill asymmetrically. That, to me, is a great argument against lots of small volumes - I'd rather just see consistent usage on a single volume.
I haven't used KairosDB, but if it gives you some control over how Cassandra is used, you could look into a few things:
See if you can use incremental repairs instead of full repairs. Since your data is an immutable time series, you won't often need to repair old SSTables, so incremental repairs would just repair recent data.
Archive old data in a different keyspace, and only repair that keyspace infrequently such as when there is a topology change. For routine repairs, only repair the "hot" keyspace you use for recent data.
Experiment with using a different compaction strategy, perhaps DateTiered. This might reduce the amount of time spent on compaction since it would spend less time compacting old data.
There are other repair options that might help, for example I've found the the -local option speeds up repairs significantly if you are running multiple data centers. Or perhaps you could run limited repairs more frequently rather than performance killing full repairs on everything.
I have some Cassandra clusters that use RAID5. This has worked fine so far, but if two disks in the array fail then the node becomes unusable since writes to the array are disabled. Then someone must manually intervene to fix the failed disks or remove the node from the cluster. If you have a lot of nodes, then disk failures will be a fairly common occurrence.
If no one gives you an answer about running 20 TB nodes, I'd suggest running some experiments on your own dataset. Set up a single 20 TB node and fill it with your data. As you fill it, monitor the write throughput and see if there are intolerable drops in throughput when compactions happen, and at how many TB it becomes intolerable. Then have an empty 20 TB node join the cluster and run a full repair on the new node and see how long it takes to migrate its half of the dataset to it. This would give you an idea of how long it would take to replace a failed node in your cluster.
Hope that helps.
I would recommend to think about the data model of your application and how to partition your data. For time series data it would probably make sense to use a composite key [1] which consists of a partition key + one or more columns. Partitions are distributed across multiple servers according to the hash of the partition key (depending on the Cassandra Partitioner that you use, see cassandra.yaml).
For example, you could partition your server by device that generates the data (Pattern 1 in [2]) or by a period of time (e.g., per day) as shown in Pattern 2 in [2].
You should also be aware that the max number of values per partition is limited to 2 billion [3]. So, partitioning is highly recommended. Don't store your entire time series on a single Cassandra node in a single partition.
[1] http://www.planetcassandra.org/blog/composite-keys-in-apache-cassandra/
[2] https://academy.datastax.com/demos/getting-started-time-series-data-modeling
[3] http://wiki.apache.org/cassandra/CassandraLimitations