I am trying to build DBD::SQlite on perl 5.12 on Redhat Linux 64 bit. Make Nakefile.PL is finishing with no error.
But when I am running the test by make test. I am getting follwing errors
gcc -c -I. -I/mount_point/sdk/perl/5.10.0/lib/auto/DBI -D_REENTRANT \
-D_GNU_SOURCE -fno-strict-aliasing -pipe -I/usr/local/include \
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wl,-Bsymbolic -O2 \
-DVERSION='"1.35"' -DXS_VERSION='"1.35"' -fPIC \
"-I/mu/apps/perl/5.10.0/lib/CORE" -DSQLITE_ENABLE_FTS3 \
-DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_RTREE \
-DSQLITE_ENABLE_COLUMN_METADATA -DNDEBUG=1 -DHAVE_USLEEP=1 \
SQLite.c
In file included from /usr/include/features.h:352,
from /usr/include/sys/types.h:27,
from /mu/apps/perl/5.10.0/lib/CORE/perl.h:587,
from SQLiteXS.h:11,
from SQLite.xs:3:
/usr/include/gnu/stubs.h:7:27: error: gnu/stubs-32.h: No such file or directory
make: *** [SQLite.o] Error 1
It seems that it is not able to find the stubs from 32 bit env. Can anyone help me please to get this straight. Its first time that I am encountering with 64 bit. I would appreciate that if someone can redirect me to general pit and falls too.
Thanks for reading.
I apologize for a naive assumption, but are you sure you have glibc-devel package installed?
# rpm -qf /usr/include/gnu/stubs-32.h
glibc-devel-2.14.1-14.14.1.i686
Related
Fairly unknowledgable linux (ubuntu 14.04) user here. I'm trying to install a bioinformatics program called Bowtie2 - I get this error and not sure where it's coming from. They did quote this on their website which might have something to do with it, but didn't mention it as a dependency.
TBB is now the default threading library. We consistently found TBB to
give superior thread scaling. It is widely available and widely
installed. That said, we are also preserving a "legacy" version of
Bowtie that, like previous releases, does not use TBB. To compile
Bowtie source in legacy mode use NO_TBB=1. To use legacy binaries,
download the appropriate binary archive with "legacy" in the name.
sam#SumnerLab-Computer:~/Program_Files/bowtie-1.2$ make
g++ -w -O3 -m64 -DCOMPILER_OPTIONS="\"-O3 -m64 -Wl,--hash-style=both -DWITH_TBB -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \"" -Wl,--hash-style=both -DWITH_TBB -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \
-fno-strict-aliasing -DBOWTIE_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -w -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DPREFETCH_LOCALITY=2 -DBOWTIE_MM -DBOWTIE_SHARED_MEM -DNDEBUG -Wall \
-I SeqAn-1.1 -I third_party -I third_party \
-o bowtie-build-s ebwt_build.cpp \
ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp ebwt.cpp bowtie_build_main.cpp \
-lpthread -ltbb -ltbbmalloc_proxy
In file included from pat.h:17:0,
from sequence_io.h:12,
from multikey_qsort.h:8,
from diff_sample.h:8,
from blockwise_sa.h:13,
from ebwt.h:27,
from ebwt_build.cpp:11:
threading.h:10:24: fatal error: tbb/mutex.h: No such file or directory
compilation terminated.
Makefile:259: recipe for target 'bowtie-build-s' failed
make: *** [bowtie-build-s] Error 1
Any ideas what the issue might be?
thanks
You'll probably need to install the package TBB development package, e.g. libtbb-dev.
On Ubuntu, run sudo apt-get install libtbb-dev
sudo apt-get install libtbb-dev
make
why am I getting "fatal error: asm/early_ioremap.h: No such file or directory" while building simple hello world kernel driver for x86_64 with Linux 4.4.15 libraries using gcc-4.8.5? gcc is searching for asm/early_ioremap.h which is not available in Linux 4.4.15.
any idea how can i fix this?
/opt/gcc-4.8.5-glibc-2.21-p8/x86_64-linux-gnu/bin/x86_64-linux-gnu-gcc -M -MP -MT '/home/obj/src/kernel/hello_world/hello.o' -MT '/home/obj/src/kernel/hello_world/hello.d' -MT 'hello.E' -MT 'hello.S' -I/home/src/kernel/hello_world -I/home/obj/src/kernel/linux-4.4.15/include -I/home/src/inc -I/home/obj/src/kernel/linux-4.4.15/arch/x86/include -D__KERNEL__ -DMODULE -DPACKET_LEAK_TRACING -DSIZEOF_CPU_REGISTER=8 -DNUM_DEV_CF=0 -DNUM_DEV_USB=0 -mtune=nocona -march=nocona -m64 -pipe -std=gnu89 -g -nostdinc -isystem /opt/gcc-4.8.5-glibc-2.21-p8/x86_64-linux-gnu/lib/gcc/x86_64-linux-gnu/4.8.5/include -O2 -fno-strict-aliasing -fno-common -ffreestanding -Wall -Wstrict-prototypes -Wno-trigraphs -Wmissing-format-attribute -Wdisabled-optimization -Wwrite-strings -Wimplicit-int -Wmissing-braces -Wmissing-noreturn -Wundef -Wmissing-field-initializers -Wmissing-declarations -Wmissing-prototypes -Wno-unused-parameter -Winline -mcmodel=kernel -fno-omit-frame-pointer -fno-stack-protector -mno-red-zone -fno-asynchronous-unwind-tables -imacros generated/autoconf.h hello.c -I/home/obj/src/kernel/linux-4.4.15/include/uapi/ -I/home/obj/src/kernel/linux-4.4.15/arch/x86/include/uapi/
In file included from /home/obj/src/kernel/linux-4.4.15/arch/x86/include/asm/realmode.h:5:0,
from /home/obj/src/kernel/linux-4.4.15/arch/x86/include/asm/acpi.h:33,
from /home/obj/src/kernel/linux-4.4.15/arch/x86/include/asm/fixmap.h:19,
from /home/obj/src/kernel/linux-4.4.15/arch/x86/include/asm/apic.h:12,
from /home/obj/src/kernel/linux-4.4.15/arch/x86/include/asm/smp.h:12,
from /home/obj/src/kernel/linux-4.4.15/arch/x86/include/asm/mmzone_64.h:10,
from /home/obj/src/kernel/linux-4.4.15/arch/x86/include/asm/mmzone.h:4,
from /home/obj/src/kernel/linux-4.4.15/include/linux/mmzone.h:856,
from /home/obj/src/kernel/linux-4.4.15/include/linux/gfp.h:5,
from /home/obj/src/kernel/linux-4.4.15/include/linux/kmod.h:22,
from /home/obj/src/kernel/linux-4.4.15/include/linux/module.h:13,
from hello.c:1:
/home/obj/src/kernel/linux-4.4.15/arch/x86/include/asm/io.h:43:31: fatal error: asm/early_ioremap.h: No such file or directory
#include <asm/early_ioremap.h>
^
compilation terminated.
gcc is searching for asm/early_ioremap.h which is not available in Linux 4.4.15.
any idea how can i fix this?
I think you've answered your own question; either you figure out where the functionality contained in that header file has moved, or with what it has been replaced, or you use a Linux 4.4.15-compatible hello world module, or you use an older kernel.
Personally, I'd go for trying out another example that is supposed to work with recent versions of Linux.
I've faced a very similar error just recently trying to build a module from the kernel to an out-of-tree output by specifying the O= flag.
It seems to be that this is the part causing the failure for me
make \
-j1 \
-C /lib/modules/4.17.9-041709-generic/build \
M=/home/kbingham/sources/linux/drivers/media/usb/uvc \
O=/tmp/build-uvc \
V=1 \
modules
fails,
with the error:
/usr/src/linux-headers-4.17.9-041709-generic/arch/x86/include/asm/io.h:44:10: fatal error: asm/early_ioremap.h: No such file or directory
#include <asm/early_ioremap.h>
^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
whilst
make \
-j1 \
-C /lib/modules/4.17.9-041709-generic/build \
M=/home/kbingham/sources/linux/drivers/media/usb/uvc \
V=1 \
modules
suceeds.
I downloaded Openni2 from github and run $make following the instruction in README. I got this error:
g++ -MD -MP -MT "./../../../Bin/Intermediate/x86-Release/libOpenNI2.jni.so/org_openni_NativeMethods.d ../../../Bin/Intermediate/x86-Release/libOpenNI2.jni.so/org_openni_NativeMethods.o" -c -msse3 -Wall -O2 -DNDEBUG -I. -I../../../Include -I../../../ThirdParty/PSCommon/XnLib/Include -fPIC -fvisibility=hidden -o ../../../Bin/Intermediate/x86-Release/libOpenNI2.jni.so/org_openni_NativeMethods.o org_openni_NativeMethods.cpp
g++ -o ../../../Bin/x86-Release/libOpenNI2.jni.so ./../../../Bin/Intermediate/x86-Release/libOpenNI2.jni.so/OpenNI.jni.o ./../../../Bin/Intermediate/x86-Release/libOpenNI2.jni.so/org_openni_NativeMethods.o -L../../../Bin/x86-Release -lOpenNI2 -Wl,--no-undefined -shared
/usr/lib/i386-linux-gnu/libc_nonshared.a(stack_chk_fail_local.oS): In function `__stack_chk_fail_local':
(.text+0x10): undefined reference to `__stack_chk_fail'
collect2: error: ld returned 1 exit status
make[1]: *** [../../../Bin/x86-Release/libOpenNI2.jni.so] Error 1
make[1]: Leaving directory `/home/smalleyreaserch/OpenNI2/Wrappers/java/OpenNI.jni'
make: *** [Wrappers/java/OpenNI.jni] Error 2
I have all the required packages installed. Can anyone help me?
My system is Ubuntu 14.04 32 bits but the computer is 64 bits. would that be the reason why Im getting this error?
Some other people had this problem... but it was mainly in i686 computers... anyways, here is a possible solution.
First, make sure you have java and not openjava... I have read that this gives sometimes problems.
Secondly, use
export LDFLAGS+="-lc"
This should fix your problem, if not just leave a comment
i want to cross compile gsoap for arm-linux and this is my configuration command
./configure CC="arm-linux-gcc" CROSS_COMPILER="arm-linux-" ARCH="arm" --host=arm-linux LR="arm-linux-lr" LD="arm-linux-ld" LDFLAGS="-static" --enable-static --enable-samples --disable-openssl --prefix=/usr/local/gsoap-2.8 CXX="arm-linux-g++"
and i get this error after running make
arm-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -DWITH_YACC -DWITH_LEX -DSOAPCPP_IMPORT_PATH="\"/usr/local/gsoap-2.8/share/gsoap/import\"" -DLINUX -g -O2 -MT soapcpp2-soapcpp2_yacc.o -MD -MP -MF .deps/soapcpp2-soapcpp2_yacc.Tpo -c -o soapcpp2-soapcpp2_yacc.o test -f 'soapcpp2_yacc.c' || echo './'soapcpp2_yacc.c
mv -f .deps/soapcpp2-soapcpp2_yacc.Tpo .deps/soapcpp2-soapcpp2_yacc.Po
/bin/bash ../../ylwrap soapcpp2_lex.l .c soapcpp2_lex.c -- /bin/bash /home/glassess/local/arm/gsoap-2.8/missing --run flex
make[4]: * [soapcpp2_lex.c] Error 1
so whats wrong,i must compile yacc and bison my self for arm-linux
so whats wrong,i must compile yacc and bison myself for arm-linux
You need to install flex for your build environment in order to be able to be executed by make (then not the cross-compiled one).
When I cross compile gSOAP the build output looks like:
/bin/bash ../../ylwrap soapcpp2_lex.l lex.yy.c soapcpp2_lex.c -- flex -l
In yours there is no flex command.
Probably configure flex detection failed.
You probably need to check if flex is available from your build environement, running flex -h or which flex.
compile dont need continue more for me, because i just need lib file and its create before this error
After completing all installation steps for the CommandT plugin, I get the error command-t.vim could not load the C extension when starting it. The ComamndT troubleshooting section gives this advice:
If a problem occurs the first thing you should do is inspect the output of:
ruby extconf.rb
make
During the installation, and:
vim --version
And compare the compilation and linker flags that were passed to the
extension and to Vim itself when they were built. If the Ruby-related
flags or architecture flags are different then it is likely that something
has changed in your Ruby environment and the extension may not work until
you eliminate the discrepancy.
And it does indeed seem that there is discrepancy for me.
Output from make suggests cygwin's gcc is using ruby 1.8:
gcc -I. -I/usr/lib/ruby/1.8/i386-cygwin -I/usr/lib/ruby/1.8/i386-cygwin -I. -DHA
VE_RUBY_H -g -O2 -std=c99 -Wall -Wextra -Wno-unused-parameter -c ext.c
gcc -I. -I/usr/lib/ruby/1.8/i386-cygwin -I/usr/lib/ruby/1.8/i386-cygwin -I. -DHA
VE_RUBY_H -g -O2 -std=c99 -Wall -Wextra -Wno-unused-parameter -c match.c
gcc -I. -I/usr/lib/ruby/1.8/i386-cygwin -I/usr/lib/ruby/1.8/i386-cygwin -I. -DHA
VE_RUBY_H -g -O2 -std=c99 -Wall -Wextra -Wno-unused-parameter -c matcher.c
gcc -shared -s -o ext.so ext.o match.o matcher.o -L. -L/usr/lib -L. -Wl,--enabl
e-auto-image-base,--enable-auto-import,--export-all -lruby -ldl -lcrypt
Output from vim's :version contains this output:
-DDYNAMIC_RUBY_VER=191 -DDYNAMIC_RUBY_DLL=\"msvcrt-ruby191.dll\"
The troubleshooting guide suggests using a combination of Vim 7.2, Ruby 1.8.7-p299, and DevKit 3.4.5r3-20091110. However this is not a good solution for me for a number of reasons:
I'm using Vim 7.3 and would like to continue doing so.
Ruby 1.9.3 is installed on my system, and I need it in my PATH for other projects.
So is there any way to get this working, while keeping the latest version of ruby and the latest version of vim?
UPDATE
Having followed AndrewMarshall's advice, I installed Ruby191 and DevKit-4.5.0-20100819-1536-sfx.exe according to this tutorial and ran ruby extconf.rb through that version. The make cmd executed successfully with this output:
gcc -I. -IC:/Ruby191/include/ruby-1.9.1/i386-mingw32 -I/C/Ruby191/include/ruby-1
.9.1/ruby/backward -I/C/Ruby191/include/ruby-1.9.1 -I. -DHAVE_RUBY_H -O2 -g -
Wall -Wno-parentheses -std=c99 -Wall -Wextra -Wno-unused-parameter -o ext.o -c
ext.c
gcc -I. -IC:/Ruby191/include/ruby-1.9.1/i386-mingw32 -I/C/Ruby191/include/ruby-1
.9.1/ruby/backward -I/C/Ruby191/include/ruby-1.9.1 -I. -DHAVE_RUBY_H -O2 -g -
Wall -Wno-parentheses -std=c99 -Wall -Wextra -Wno-unused-parameter -o match.o
-c match.c
gcc -I. -IC:/Ruby191/include/ruby-1.9.1/i386-mingw32 -I/C/Ruby191/include/ruby-1
.9.1/ruby/backward -I/C/Ruby191/include/ruby-1.9.1 -I. -DHAVE_RUBY_H -O2 -g -
Wall -Wno-parentheses -std=c99 -Wall -Wextra -Wno-unused-parameter -o matcher.
o -c matcher.c
gcc -shared -s -o ext.so ext.o match.o matcher.o -L. -LC:/Ruby191/lib -L. -Wl,-
-enable-auto-image-base,--enable-auto-import -lmsvcrt-ruby191 -lshell32 -lws2
_32
and running :CommandT in vim works now, but as soon as I start typing to search for a file, and then hit enter to select and open it, I get this:
not a real answer but you may wanna try ctrlp instead.
written in vimscript (no dependency, no compiling)
as fast as CommandT (subjective to me)
has probably more features than CommandT (does CommandT have most recent file?)
there is also the good old FuzzyFinder which I haven't tried. seems like it hasn't got updated for about 2 years but it may still be working.
I successfully installed newest command-t on vim 8.0 on windows 10. And I find this question when I'm working on it so I'm gonna post my solution although it's a little late.
Ruby version for vim 8.0 is Ruby 2.2. So download and install Ruby 2.2 and Ruby Devkit (remember to execute ruby dk.rb init and ruby dk.rb install for devkit ).
Then I follow the command-t instruction to execute ruby extconf.conf, but it failed -- it output You have to install development tools first. even though I did install it:
I googled this issue find RubyInstaller wiki says that I should execute this command by add -rdevkit and I did it. It succeed when I execute ruby -rdevkit extconf.rb but failed when make. So I googled again and find another way to compile it:
rake make -rdevkit
And it worked. Here is my screenshot: