Using text-icu library in Haskell on Mac OS - haskell

I am trying to use the text-icu library as a dependency in a cabal package on Mac OS. I have icu installed but when I try to build my package cabal gives me this error:
Missing C libraries: icui18n, icudata, icuuc
I'm am unsure what debugging steps to use.

You can use either MacPorts or Homebrew to install the icu package, and have cabal refer to the custom header and library path:
MacPorts
sudo port install icu
cabal install text-icu --extra-include-dirs=/opt/local/include --extra-lib-dirs=/opt/local/lib
Homebrew
brew install icu4c
cabal install text-icu --extra-lib-dirs=/usr/local/opt/icu4c/lib --extra-include-dirs=/usr/local/opt/icu4c/include

Related

Cannot access pg_config on virtualenv python [duplicate]

I'm using virtualenv and I need to install "psycopg2".
I have done the following:
pip install http://pypi.python.org/packages/source/p/psycopg2/psycopg2-2.4.tar.gz#md5=24f4368e2cfdc1a2b03282ddda814160
And I have the following messages:
Downloading/unpacking http://pypi.python.org/packages/source/p/psycopg2/psycopg2
-2.4.tar.gz#md5=24f4368e2cfdc1a2b03282ddda814160
Downloading psycopg2-2.4.tar.gz (607Kb): 607Kb downloaded
Running setup.py egg_info for package from http://pypi.python.org/packages/sou
rce/p/psycopg2/psycopg2-2.4.tar.gz#md5=24f4368e2cfdc1a2b03282ddda814160
Error: pg_config executable not found.
Please add the directory containing pg_config to the PATH
or specify the full executable path with the option:
python setup.py build_ext --pg-config /path/to/pg_config build ...
or with the pg_config option in 'setup.cfg'.
Complete output from command python setup.py egg_info:
running egg_info
creating pip-egg-info\psycopg2.egg-info
writing pip-egg-info\psycopg2.egg-info\PKG-INFO
writing top-level names to pip-egg-info\psycopg2.egg-info\top_level.txt
writing dependency_links to pip-egg-info\psycopg2.egg-info\dependency_links.txt
writing manifest file 'pip-egg-info\psycopg2.egg-info\SOURCES.txt'
warning: manifest_maker: standard file '-c' not found
Error: pg_config executable not found.
Please add the directory containing pg_config to the PATH
or specify the full executable path with the option:
python setup.py build_ext --pg-config /path/to/pg_config build ...
or with the pg_config option in 'setup.cfg'.
----------------------------------------
Command python setup.py egg_info failed with error code 1
Storing complete log in C:\Documents and Settings\anlopes\Application Data\pip\p
ip.log
My question, I only need to do this to get the psycopg2 working?
python setup.py build_ext --pg-config /path/to/pg_config build ...
Note: Since a while back, there are binary wheels for Windows in PyPI, so this should no longer be an issue for Windows users. Below are solutions for Linux, Mac users, since lots of them find this post through web searches.
Option 1
Install the psycopg2-binary PyPI package instead, it has Python wheels for Linux and Mac OS.
pip install psycopg2-binary
Option 2
Install the prerequsisites for building the psycopg2 package from source:
Debian/Ubuntu
Python 3
sudo apt install libpq-dev python3-dev
You might need to install python3.8-dev or similar for e.g. Python 3.8.
Python 2
sudo apt install libpq-dev python-dev
If that's not enough, try
sudo apt install build-essential
or
sudo apt install postgresql-server-dev-all
as well before installing psycopg2 again.
CentOS 6
See Banjer's answer
macOS
See nichochar's answer
On CentOS, you need the postgres dev packages:
sudo yum install python-devel postgresql-devel
That was the solution on CentOS 6 at least.
If you're on a mac you can use homebrew
brew install postgresql
And all other options are here: http://www.postgresql.org/download/macosx/
On Mac Mavericks with Postgres.app version 9.3.2.0 RC2 I needed to use the following code after installing Postgres:
sudo PATH=$PATH:/Applications/Postgres.app/Contents/Versions/9.3/bin pip install psycopg2
I recently configured psycopg2 on a windows machine. The easiest install is using a windows executable binary. You can find it at http://stickpeople.com/projects/python/win-psycopg/.
To install the native binary in a virtual envrionment, use easy_install:
C:\virtualenv\Scripts\> activate.bat
(virtualenv) C:\virtualenv\Scripts\> easy_install psycopg2-2.5.win32-py2.7-pg9.2.4-release.exe
For Python 3 you should use sudo apt-get install libpq-dev python3-dev under Debian.
This is what worked for me (On RHEL, CentOS:
sudo yum install postgresql postgresql-devel python-devel
And now include the path to your postgresql binary dir with you pip install:
sudo PATH=$PATH:/usr/pgsql-9.3/bin/ pip install psycopg2
Make sure to include the correct path. Thats all :)
UPDATE: For python 3, please install python3-devel instead of python-devel
The answers so far are too much like magic recipes. The error that you received tells you that pip cannot find a needed part of the PostgreSQL Query library. Possibly this is because you have it installed in a non-standard place for your OS which is why the message suggests using the --pg-config option.
But a more common reason is that you don't have libpq installed at all. This commonly happens on machines where you do NOT have PostgreSQL server installed because you only want to run client apps, not the server itself. Each OS/distro is different, for instance on Debian/Ubuntu you need to install libpq-dev. This allows you to compile and link code against the PostgreSQL Query library.
Most of the answers also suggest installing a Python dev library. Be careful. If you are only using the default Python installed by your distro, that will work, but if you have a newer version, it could cause problems. If you have built Python on this machine then you already have the dev libraries needed for compiling C/C++ libraries to interface with Python. As long as you are using the correct pip version, the one installed in the same bin folder as the python binary, then you are all set. No need to install the old version.
If you using Mac OS, you should install PostgreSQL from source.
After installation is finished, you need to add this path using:
export PATH=/local/pgsql/bin:$PATH
or you can append the path like this:
export PATH=.../:usr/local/pgsql/bin
in your .profile file or .zshrc file.
This maybe vary by operating system.
You can follow the installation process from http://www.thegeekstuff.com/2009/04/linux-postgresql-install-and-configure-from-source/
On Debian/Ubuntu:
First install and build dependencies of psycopg2 package:
# apt-get build-dep python-psycopg2
Then in your virtual environment, compile and install psycopg2 module:
(env)$ pip install psycopg2
Run below commands and you should be fine
$ apt-get update
$ apt install python3-dev libpq-dev
$ pip3 install psycopg2
I've done this before where in windows you install first into your base python installation.
Then, you manually copy the installed psycopg2 to the virtualenv install.
It's not pretty, but it works.
Before you can install psycopg2 you will need to install the python-dev package.
If you're working from Linux (and possibly other systems but i can't speak from experience) you will need to make sure to be quite exact about what version of python your running when installing the dev package.
For example when I used the command:
sudo apt-get install python3-dev
I still ran into the same error when trying to
pip install psycopg2
As I am using python 3.7 I needed to use the command
sudo apt-get install python3.7-dev
Once I did this I ran into no more issues. Obviously if your on python version 3.5 you would change that 7 to a 5.
Besides installing the required packages, I also needed to manually add PostgreSQL bin directory to PATH.
$vi ~/.bash_profile
Add PATH=/usr/pgsql-9.2/bin:$PATH before export PATH.
$source ~/.bash_profile
$pip install psycopg2
For MacOS,
Use the below command to install psycopg2, works like charm!!!
env LDFLAGS="-I/usr/local/opt/openssl/include -L/usr/local/opt/openssl/lib" pip install psycopg2
On windows XP you get this error if postgres is not installed ...
I installed Postgresql92 using the RedHat / CentOS repository on PG's downloads site http://www.postgresql.org/download/linux/redhat/
To get pg_config, I had to add /usr/pgsql-9.2/bin to PATH.
On Fedora 24: For Python 3.x
sudo dnf install postgresql-devel python3-devel
sudo dnf install redhat-rpm-config
Activate your Virtual Environment:
pip install psycopg2
Psycopg2 Depends on Postgres Libraries.
On Ubuntu You can use:
apt-get install libpq-dev
Then:
pip install psycopg2
I've been battling with this for days, and have finally figured out how to get the "pip install psycopg2" command to run in a virtualenv in Windows (running Cygwin).
I was hitting the "pg_config executable not found." error, but I had already downloaded and installed postgres in Windows. It installed in Cygwin as well; running "which pg_config" in Cygwin gave "/usr/bin/pg_config", and running "pg_config" gave sane output -- however the version installed with Cygwin is:
VERSION = PostgreSQL 8.2.11
This won't work with the current version of psycopg2, which appears to require at least 9.1. When I added "c:\Program Files\PostgreSQL\9.2\bin" to my Windows path, the Cygwin pip installer was able to find the correct version of PostgreSQL, and I was able to successfully install the module using pip. (This is probably preferable to using the Cygwin version of PostgreSQL anyway, as the native version will run much quicker).
On OpenSUSE 13.2, this fixed it:
sudo zypper in postgresql-devel
For lowly Windows users were stuck having to install psycopg2 from the link below, just install it to whatever Python installation you have setup. It will place the folder named "psycopg2" in the site-packages folder of your python installation.
After that, just copy that folder to the site-packages directory of your virtualenv and you will have no problems.
here is the link you can find the executable to install psycopg2
http://www.lfd.uci.edu/~gohlke/pythonlibs/
On Ubuntu I just needed the postgres dev package:
sudo apt-get install postgresql-server-dev-all
*Tested in a virtualenv
I could install it in a windows machine and using Anaconda/Spyder with python 2.7 through the following commands:
!pip install psycopg2
Then to establish the connection to the database:
import psycopg2
conn = psycopg2.connect(dbname='dbname',host='host_name',port='port_number', user='user_name', password='password')
In Arch base distributions:
sudo pacman -S python-psycopg2
pip2 install psycopg2 # Use pip or pip3 to python3
On OSX 10.11.6 (El Capitan)
brew install postgresql
PATH=$PATH:/Library/PostgreSQL/9.4/bin pip install psycopg2
On OSX with macports:
sudo port install postgresql96
export PATH=/opt/local/lib/postgresql96/bin:$PATH
if pip is not working than you can download .whl file from here https://pypi.python.org/pypi/psycopg2
extract it..
than python setup.py install
I was having this problem, the main reason was with 2 equal versions installed. One by postgres.app and one by HomeBrew.
If you choose to keep only the APP:
brew unlink postgresql
pip3 install psycopg2
Installation on MacOS
Following are the steps, which worked for me and my team members while installing psycopg2 on Mac OS Big Sur and which we have extensively tested for Big Sur. Before starting make sure you have the Xcode command-line tool installed. If not, then install it from the Apple Developer site. The below steps assume you have homebrew installed. If you have not installed homebrew then install it. Last but not the least, it also assumes you already have PostgreSQL installed in your system, if not then install it. Different people have different preferences but the default installation method on the official PostgreSQL site via Enterprise DB installer is the best method for the majority of people.
Put up the linkage to pg_config file in your .zshrc file by: export PATH="$PATH:/Library/PostgreSQL/12/bin:$PATH". This way you are having linkage with the pg_config file in the /Library/PostgreSQL/12/bin folder. So if your PostgreSQL installation is via other means, like Postgres.app or Postgres installation via homebrew, then you need to have in your .zshrc file the link to pg_config file from the bin folder of that PostgreSQL installation as psycopg2 relies on that.
Install OpenSSL via Homebrew using the command brew install openssl. The reason for this is that libpq, the library which is the basis of psycopg2, uses openssl - psycopg2 doesn't use it directly. After installing put the following commands in your .zshrc file:
export PATH="/usr/local/opt/openssl#1.1/bin:$PATH"
export LDFLAGS="-L/usr/local/opt/openssl#1.1/lib"
export CPPFLAGS="-I/usr/local/opt/openssl#1.1/include"
By doing this you are creating necessary linkages in your directory. These commands are suggested by brew while you install openssl and have been directly picked up from there.
Now comes the most important step, which is to install libpq using the command brew install libpq. This installs libpq library. As per the documentation
libpq is the C application programmer's interface to PostgreSQL. libpq is a set of library functions that allow client programs to pass queries to the PostgreSQL backend server and to receive the results of these queries.
Link libpq using brew link libpq, if this doesn't work then use the command: brew link libpq --force.
Also put in your .zshrc file the following export PATH="/usr/local/opt/libpq/bin:$PATH". This creates all the necessary linkages for libpq library .
Now restart the terminal or use the following command source ~/.zshrc.
This works even when you are working in conda environment.
N.B. pip install psycopg2-binaryshould be avoided because as per the developers of the psycopg2 library
The use of the -binary packages in production is discouraged because in the past they proved unreliable in multithread environments. This might have been fixed in more recent versions but I have never managed to reproduce the failure.

flatpak add additional dependencies after install (QGIS)

I'm encountering a problem with the org.qgis.qgis package. It has a self-contained python install which it uses to run its plugins and console.
This page tells me to install python modules using the following command:
flatpak run --command=pip3 org.qgis.qgis install pycurl --user
But pip install pycurl fails due to missing dependencies (I recognized the error from when I'd installed the module onto the native python install of my machine).
I can (and already have) installed the dependencies natively so i am able to run the pycurl module from the natively installed python on my machine
From Flatpak's docs, I can see how a developer could add the build dependencies for the module to the flatpak dependencies.
But what If I am a user and I need to install additional dependencies not anticipated by the package maintainer?

How to install Contextily?

This question is written in relation with the answer to Plotting a map using geopandas and matplotlib.
The main point is that installing (spatial) libraries such as Proj.4 or Contextily can be a confusing task under Windows, so that most of the time we are advised to directly
use the OSGeo4W software distribution.
An example of such an advise here.
A contrario, the task is rather easy with other operating systems.
The main idea is to provide interrogative users with a "lite" installation approach.
Using Anaconda / conda
If you are using the Anaconda distribution or in general the conda package manager (which I recommend for installing the python geo stack), it should suffice to install contextily with:
conda install contextily --channel conda-forge
This will automatically install all python and C dependencies (proj.4, GDAL, ...)
This should work on all platforms (Windows, Linux, Mac).
Windows
(Without any conda-like distribution)
After manually downloading the WHL files from Unofficial Windows Binaries for Python Extension Packages. Open an Administrator Command Prompt and type (illustrated on Python3.6 32bit):
pip3.6 install GDAL-2.3.3-cp36-cp36m-win32.whl && setx GDAL_VERSION "2.3.3"
pip3.6 install Fiona-1.8.4-cp36-cp36m-win32.whl
pip3.6 install geopandas-0.4.0-py2.py3-none-any.whl
pip3.6 install proj
pip3.6 install Shapely-1.6.4.post1-cp36-cp36m-win32.whl
pip3.6 install Cartopy-0.17.0-cp36-cp36m-win32.whl
pip3.6 install rasterio-1.0.13-cp36-cp36m-win32.whl
pip3.6 install contextily
(tested).
Well from oficial install page with conda is :
conda install -c conda-forge contextily
Install geopandas and contextily

Haskell: Trouble updating/detecting cabal

I have both ghci versions 7.10 and 8 installed on my Ubuntu 16.04. I want to install something based on cabal. I already have cabal installed as the command
cabal --version
yields
cabal-install version 1.22.6.0
using version 1.22.5.0 of the Cabal library
But when I go to update with
cabal update
I get
Downloading the latest package list from hackage.haskell.org
cabal: does not exist
So I am not sure what is going on or how to resolve this. I hope to afterwards install gloss which is based on cabal. But
cabal install gloss-examples
yields
Resolving dependencies...
Downloading bindings-DSL-1.0.23...
Downloading bmp-1.2.6.3...
Failed to install bmp-1.2.6.3
Downloading vector-0.10.12.3...
Build log ( /home/username/.cabal/logs/bmp-1.2.6.3.log ):
cabal: /home/username/.cabal/logs/bmp-1.2.6.3.log: does not exist
EDIT: I originally installed ghci 7.10. Then later installed ghci 8. Could this have any effect?
EDIT2: After installing
cabal install Cabal cabal-install
I still get the same error with
cabal update
Also I still cannot
cabal install gloss-examples
But I get a different error this time
Resolving dependencies...
Downloading bindings-DSL-1.0.23...
Downloading bmp-1.2.6.3...
Failed to install bindings-DSL-1.0.23
Downloading vector-0.10.12.3...
Build log ( /home/aa/.cabal/logs/bindings-DSL-1.0.23.log ):
cabal: /home/aa/.cabal/logs/bindings-DSL-1.0.23.log: does not exist
EDIT3: When I installed Cabal, it says that I installed
Installed cabal-install-1.24.0.2
But when I check with
cabal --version
I am still stuck at
cabal-install version 1.22.6.0
which tells me somehow they are not linked.

Some haskell dynamic library missing

This error message failing my installation of haskell-src-exts-1.15.0.1
ld: library not found for -lHScpphs-1.18.5-ghc7.8.2
So I guess my cpphs is missing. When I tried to install cpphs, however
$ cabal install cpphs
Resolving dependencies...
All the requested packages are already installed:
cpphs-1.18.5
Use --reinstall if you want to reinstall anyway.
The similar error happens for text-1.1.1.3.
I have tried erasing everything and reinstalling haskell-platform but it doesnt work.
I use haskell-platform installed from homebrew, but I had already had the latest version of cabal and ghc
λ ~/cabal --version
cabal-install version 1.20.0.3
using version 1.20.0.1 of the Cabal library
λ ~/ghc --version
The Glorious Glasgow Haskell Compilation System, version 7.8.2
find ing the *.dylib gives no result.

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