"pre-built" matrices for latent semantic analysis - nlp

I want to use Latent Semantic Analysis for a small app I'm building, but I don't want to build up the matrices myself. (Partly because the documents I have wouldn't make a very good training collection, because they're kinda short and heterogeneous, and partly because I just got a new computer and I'm finding it a bitch to install the linear algebra and such libraries I would need.)
Are there any "default"/pre-built LSA implementations available? For example, things I'm looking for include:
Default U,S,V matrices (i.e., if D is a term-document matrix from some training set, then D = U S V^T is the singular value decomposition), so that given any query vector q, I can use these matrices to compute the LSA projection of q myself.
Some black-box LSA algorithm that, given a query vector q, returns the LSA projection of q.

You'd probably be interested in the Gensim framework for Python; notably, it has an example on building the appropriate matrices from English Wikipedia.

Related

What is the difference between word2vec, glove, and elmo? [duplicate]

What is the difference between word2vec and glove?
Are both the ways to train a word embedding? if yes then how can we use both?
Yes, they're both ways to train a word embedding. They both provide the same core output: one vector per word, with the vectors in a useful arrangement. That is, the vectors' relative distances/directions roughly correspond with human ideas of overall word relatedness, and even relatedness along certain salient semantic dimensions.
Word2Vec does incremental, 'sparse' training of a neural network, by repeatedly iterating over a training corpus.
GloVe works to fit vectors to model a giant word co-occurrence matrix built from the corpus.
Working from the same corpus, creating word-vectors of the same dimensionality, and devoting the same attention to meta-optimizations, the quality of their resulting word-vectors will be roughly similar. (When I've seen someone confidently claim one or the other is definitely better, they've often compared some tweaked/best-case use of one algorithm against some rough/arbitrary defaults of the other.)
I'm more familiar with Word2Vec, and my impression is that Word2Vec's training better scales to larger vocabularies, and has more tweakable settings that, if you have the time, might allow tuning your own trained word-vectors more to your specific application. (For example, using a small-versus-large window parameter can have a strong effect on whether a word's nearest-neighbors are 'drop-in replacement words' or more generally words-used-in-the-same-topics. Different downstream applications may prefer word-vectors that skew one way or the other.)
Conversely, some proponents of GLoVe tout that it does fairly well without needing metaparameter optimization.
You probably wouldn't use both, unless comparing them against each other, because they play the same role for any downstream applications of word-vectors.
Word2vec is a predictive model: trains by trying to predict a target word given a context (CBOW method) or the context words from the target (skip-gram method). It uses trainable embedding weights to map words to their corresponding embeddings, which are used to help the model make predictions. The loss function for training the model is related to how good the model’s predictions are, so as the model trains to make better predictions it will result in better embeddings.
The Glove is based on matrix factorization techniques on the word-context matrix. It first constructs a large matrix of (words x context) co-occurrence information, i.e. for each “word” (the rows), you count how frequently (matrix values) we see this word in some “context” (the columns) in a large corpus. The number of “contexts” would be very large, since it is essentially combinatorial in size. So we factorize this matrix to yield a lower-dimensional (word x features) matrix, where each row now yields a vector representation for each word. In general, this is done by minimizing a “reconstruction loss”. This loss tries to find the lower-dimensional representations which can explain most of the variance in the high-dimensional data.
Before GloVe, the algorithms of word representations can be divided into two main streams, the statistic-based (LDA) and learning-based (Word2Vec). LDA produces the low dimensional word vectors by singular value decomposition (SVD) on the co-occurrence matrix, while Word2Vec employs a three-layer neural network to do the center-context word pair classification task where word vectors are just the by-product.
The most amazing point from Word2Vec is that similar words are located together in the vector space and arithmetic operations on word vectors can pose semantic or syntactic relationships, e.g., “king” - “man” + “woman” -> “queen” or “better” - “good” + “bad” -> “worse”. However, LDA cannot maintain such linear relationship in vector space.
The motivation of GloVe is to force the model to learn such linear relationship based on the co-occurreence matrix explicitly. Essentially, GloVe is a log-bilinear model with a weighted least-squares objective. Obviously, it is a hybrid method that uses machine learning based on the statistic matrix, and this is the general difference between GloVe and Word2Vec.
If we dive into the deduction procedure of the equations in GloVe, we will find the difference inherent in the intuition. GloVe observes that ratios of word-word co-occurrence probabilities have the potential for encoding some form of meaning. Take the example from StanfordNLP (Global Vectors for Word Representation), to consider the co-occurrence probabilities for target words ice and steam with various probe words from the vocabulary:
As one might expect, ice co-occurs more frequently with solid than it
does with gas, whereas steam co-occurs more frequently with gas than
it does with solid.
Both words co-occur with their shared property water frequently, and both co-occur with the unrelated word fashion infrequently.
Only in the ratio of probabilities does noise from non-discriminative words like water and fashion cancel out, so that large values (much greater than 1) correlate well with properties specific to ice, and small values (much less than 1) correlate well with properties specific of steam.
However, Word2Vec works on the pure co-occurrence probabilities so that the probability that the words surrounding the target word to be the context is maximized.
In the practice, to speed up the training process, Word2Vec employs negative sampling to substitute the softmax fucntion by the sigmoid function operating on the real data and noise data. This emplicitly results in the clustering of words into a cone in the vector space while GloVe’s word vectors are located more discretely.

how to find k value for k-means?

I am using k-means on a dataset including more than 150k documents but i don't know what a good k value is.
I have tried elbow method to find it but the inertia value doesn't change so much.(i am using sklearn).
here is the
If elbow method does not have a clear answer, then possibly no number of clusters is particularly good. k-means can only model spherical relationships, which might be limiting. You can maybe try other feature representations, such as something based on Word Embeddings.
For a document grouping task, you might want to use a topic modelling approach instead of clustering, like Latent Dirichlet Allocation (LDA) or Non-negative Matrix factorization (NMF).

What's a good measure for classifying text documents?

I have written an application that measures text importance. It takes a text article, splits it into words, drops stopwords, performs stemming, and counts word-frequency and document-frequency. Word-frequency is a measure that counts how many times the given word appeared in all documents, and document-frequency is a measure that counts how many documents the given word appeared.
Here's an example with two text articles:
Article I) "A fox jumps over another fox."
Article II) "A hunter saw a fox."
Article I gets split into words (afters stemming and dropping stopwords):
["fox", "jump", "another", "fox"].
Article II gets split into words:
["hunter", "see", "fox"].
These two articles produce the following word-frequency and document-frequency counters:
fox (word-frequency: 3, document-frequency: 2)
jump (word-frequency: 1, document-frequency: 1)
another (word-frequency: 1, document-frequency: 1)
hunter (word-frequency: 1, document-frequency: 1)
see (word-frequency: 1, document-frequency: 1)
Given a new text article, how do I measure how similar this article is to previous articles?
I've read about df-idf measure but it doesn't apply here as I'm dropping stopwords, so words like "a" and "the" don't appear in the counters.
For example, I have a new text article that says "hunters love foxes", how do I come up with a measure that says this article is pretty similar to ones previously seen?
Another example, I have a new text article that says "deer are funny", then this one is a totally new article and similarity should be 0.
I imagine I somehow need to sum word-frequency and document-frequency counter values but what's a good formula to use?
A standard solution is to apply the Naive Bayes classifier which estimates the posterior probability of a class C given a document D, denoted as P(C=k|D) (for a binary classification problem, k=0 and 1).
This is estimated by computing the priors from a training set of class labeled documents, where given a document D we know its class C.
P(C|D) = P(D|C) * P(D) (1)
Naive Bayes assumes that terms are independent, in which case you can write P(D|C) as
P(D|C) = \prod_{t \in D} P(t|C) (2)
P(t|C) can simply be computed by counting how many times does a term occur in a given class, e.g. you expect that the word football will occur a large number of times in documents belonging to the class (category) sports.
When it comes to the other factor P(D), you can estimate it by counting how many labeled documents are given from each class, may be you have more sports articles than finance ones, which makes you believe that there is a higher likelihood of an unseen document to be classified into the sports category.
It is very easy to incorporate factors, such as term importance (idf), or term dependence into Equation (1). For idf, you add it as a term sampling event from the collection (irrespective of the class).
For term dependence, you have to plugin probabilities of the form P(u|C)*P(u|t), which means that you sample a different term u and change (transform) it to t.
Standard implementations of Naive Bayes classifier can be found in the Stanford NLP package, Weka and Scipy among many others.
It seems that you are trying to answer several related questions:
How to measure similarity between documents A and B? (Metric learning)
How to measure how unusual document C is, compared to some collection of documents? (Anomaly detection)
How to split a collection of documents into groups of similar ones? (Clustering)
How to predict to which class a document belongs? (Classification)
All of these problems are normally solved in 2 steps:
Extract the features: Document --> Representation (usually a numeric vector)
Apply the model: Representation --> Result (usually a single number)
There are lots of options for both feature engineering and modeling. Here are just a few.
Feature extraction
Bag of words: Document --> number of occurences of each individual word (that is, term frequencies). This is the basic option, but not the only one.
Bag of n-grams (on word-level or character-level): co-occurence of several tokens is taken into account.
Bag of words + grammatic features (e.g. POS tags)
Bag of word embeddings (learned by an external model, e.g. word2vec). You can use embedding as a sequence or take their weighted average.
Whatever you can invent (e.g. rules based on dictionary lookup)...
Features may be preprocessed in order to decrease relative amount of noise in them. Some options for preprocessing are:
dividing by IDF, if you don't have a hard list of stop words or believe that words might be more or less "stoppy"
normalizing each column (e.g. word count) to have zero mean and unit variance
taking logs of word counts to reduce noise
normalizing each row to have L2 norm equal to 1
You cannot know in advance which option(s) is(are) best for your specific application - you have to do experiments.
Now you can build the ML model. Each of 4 problems has its own good solutions.
For classification, the best studied problem, you can use multiple kinds of models, including Naive Bayes, k-nearest-neighbors, logistic regression, SVM, decision trees and neural networks. Again, you cannot know in advance which would perform best.
Most of these models can use almost any kind of features. However, KNN and kernel-based SVM require your features to have special structure: representations of documents of one class should be close to each other in sense of Euclidean distance metric. This sometimes can be achieved by simple linear and/or logarithmic normalization (see above). More difficult cases require non-linear transformations, which in principle may be learned by neural networks. Learning of these transformations is something people call metric learning, and in general it is an problem which is not yet solved.
The most conventional distance metric is indeed Euclidean. However, other distance metrics are possible (e.g. manhattan distance), or different approaches, not based on vector representations of texts. For example, you can try to calculate Levenstein distance between texts, based on count of number of operations needed to transform one text to another. Or you can calculate "word mover distance" - the sum of distances of word pairs with closest embeddings.
For clustering, basic options are K-means and DBScan. Both these models require your feature space have this Euclidean property.
For anomaly detection you can use density estimations, which are produced by various probabilistic algorithms: classification (e.g. naive Bayes or neural networks), clustering (e.g. mixture of gaussian models), or other unsupervised methods (e.g. probabilistic PCA). For texts, you can exploit the sequential language structure, estimating probabilitiy of each word conditional on the previous words (using n-grams or convolutional/recurrent neural nets) - this is called language models, and it is usually more efficient than bag-of-word assumption of Naive Bayes, which ignores word order. Several language models (one for each class) may be combined into one classifier.
Whatever problem you solve, it is strongly recommended to have a good test set with the known "ground truth": which documents are close to each other, or belong to the same class, or are (un)usual. With this set, you can evaluate different approaches to feature engineering and modelling, and choose the best one.
If you don't have resourses or willingness to do multiple experiments, I would recommend to choose one of the following approaches to evaluate similarity between texts:
word counts + idf normalization + L2 normalization (equivalent to the solution of #mcoav) + Euclidean distance
mean word2vec embedding over all words in text (the embedding dictionary may be googled up and downloaded) + Euclidean distance
Based on one of these representations, you can build models for the other problems - e.g. KNN for classifications or k-means for clustering.
I would suggest tf-idf and cosine similarity.
You can still use tf-idf if you drop out stop-words. It is even probable that whether you include stop-words or not would not make such a difference: the Inverse Document Frequency measure automatically downweighs stop-words since they are very frequent and appear in most documents.
If your new document is entirely made of unknown terms, the cosine similarity will be 0 with every known document.
When I search on df-idf I find nothing.
tf-idf with cosine similarity is very accepted and common practice
Filtering out stop words does not break it. For common words idf gives them low weight anyway.
tf-idf is used by Lucene.
Don't get why you want to reinvent the wheel here.
Don't get why you think the sum of df idf is a similarity measure.
For classification do you have some predefined classes and sample documents to learn from? If so can use Naive Bayes. With tf-idf.
If you don't have predefined classes you can use k means clustering. With tf-idf.
It depend a lot on your knowledge of the corpus and classification objective. In like litigation support documents produced to you, you have and no knowledge of. In Enron they used names of raptors for a lot of the bad stuff and no way you would know that up front. k means lets the documents find their own clusters.
Stemming does not always yield better classification. If you later want to highlight the hits it makes that very complex and the stem will not be the length of the word.
Have you evaluated sent2vec or doc2vec approaches? You can play around with the vectors to see how close the sentences are. Just an idea. Not a verified solution to your question.
While in English a word alone may be enough, it isn't the case in some other more complex languages.
A word has many meanings, and many different uses cases. One text can talk about the same things while using fews to none matching words.
You need to find the most important words in a text. Then you need to catch their possible synonyms.
For that, the following api can help. It is doable to create something similar with some dictionaries.
synonyms("complex")
function synonyms(me){
var url = 'https://api.datamuse.com/words?ml=' + me;
fetch(url).then(v => v.json()).then((function(v){
syn = JSON.stringify(v)
syn = JSON.parse(syn)
for(var k in syn){
document.body.innerHTML += "<span>"+syn[k].word+"</span> "
}
})
)
}
From there comparing arrays will give much more accuracy, much less false positive.
A sufficient solution, in a possibly similar task:
Use of a binary bag-of-word (BOW) approach for the vector representation (frequent words aren't higher weighted than seldom words), rather than a real TF approach
The embedding "word2vec" approach, is sensitive to sequence and distances effects. It might make - depending on your hyper-parameters - a difference between 'a hunter saw a fox' and 'a fox saw a jumping hunter' ... so you have to decide, if this means adding noise to your task - or, alternatively, to use it as an averaged vector only, over all of your text
Extract high within-sentence-correlation words ( e.g., by using variables- mean-normalized- cosine-similaritities )
Second Step: Use this list of high-correlated words, as a positive list, i.e. as new vocab for an new binary vectorizer
This isolated meaningful words for the 2nd step cosine comparisons - in my case, even for rather small amounts of training texts

How can we use TFIDF vectors with multinomial naive bayes?

Say we have used the TFIDF transform to encode documents into continuous-valued features.
How would we now use this as input to a Naive Bayes classifier?
Bernoulli naive-bayes is out, because our features aren't binary anymore.
Seems like we can't use Multinomial naive-bayes either, because the values are continuous rather than categorical.
As an alternative, would it be appropriate to use gaussian naive bayes instead? Are TFIDF vectors likely to hold up well under the gaussian-distribution assumption?
The sci-kit learn documentation for MultionomialNB suggests the following:
The multinomial Naive Bayes classifier is suitable for classification
with discrete features (e.g., word counts for text classification).
The multinomial distribution normally requires integer feature counts.
However, in practice, fractional counts such as tf-idf may also work.
Isn't it fundamentally impossible to use fractional values for MultinomialNB?
As I understand it, the likelihood function itself assumes that we are dealing with discrete-counts (since it deals with counting/factorials)
How would TFIDF values even work with this formula?
Technically, you are right. The (traditional) Multinomial N.B. model considers a document D as a vocabulary-sized feature vector x, where each element xi is the count of term i i document D. By definition, this vector x then follows a multinomial distribution, leading to the characteristic classification function of MNB.
When using TF-IDF weights instead of term counts, our feature vectors are (most likely) not following a multinomial distribution anymore, so the classification function is not theoretically well-founded anymore. However, it does turn out that tf-idf weights instead of counts work (much) better.
How would TFIDF values even work with this formula?
In the exact same way, except that the feature vector x is now a vector of tf-idf weights and not counts.
You can also check out the Sublinear tf-idf weighting scheme, implemented in sklearn tfidf-vectorizer. In my own research I found this one performing even better: it uses a logarithmic version of the term frequency. The idea is that when a query term occurs 20 times in doc. a and 1 time in doc. b, doc. a should (probably) not be considered 20 times as important but more likely log(20) times as important.

How Latent Semantic Analysis Handle Semantics

I have gone through LSA method. It is said that LSA can be used for semantic analysis. But I can not understand how it is working in LSA. Can anyone please tell me how LSA handle semantics.
Are you familiar with the vector space model (VSM)?
In LSA you can compute document similarity as well as type (i.e. word) similarity just as you would with the traditional VSM. That is, you compute the cosine between two type-vectors or two document-vectors (actually LSA allows you to compute also type-document similarity).
The problem with the VSM is that the cosine similarity of documents which do not share a single word equals to 0.
In LSA, the singular value decomposition (SVD) reveals latent semantic dimensions which allow
you to compute the cosine similarity between documents with no words in common, but with some common characteristics.

Resources